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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0133500 |
| Transcript ID | LotjaGi6g1v0133500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT3G14250.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q4KLT0|RN217_XENLA Probable E3 ubiquitin-protein ligase RNF217; TrEMBL-Plants: tr|A0A151UAA9|A0A151UAA9_CAJCA Putative E3 ubiquitin-protein ligase RNF217; Found in the gene: LotjaGi6g1v0133500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:38562200..38566766) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAACCAACACGATGTTGATCCAATGGTAGAAAATTAAATCATGTAAAAGTGAGGTCACAATATAAACCCTGAAAAA ATCAAGGGAAAAAAAACTTCATCTATGTATTGTTGATTTTAGACTGGGCCAAATTTAGTCAAATATTAGATTGGATTTGA ATTTAAATAGCGCCCAAAACATAGCATCGGTGCAACCAAACGAAACCCTTGCCTTGCCACCACTAGCCACCGCCACTGCC ACATTTCCCTCCTCCAACGCCGTCTGCAGAAGCAAACCGATCGAATCTCAGAGCGAAAATGTCAGGAAATTCACCAAACA CGACGAAGAGGAAACTTCCCTCTAATCATCACGATGAAAAGAATAAGAAAACACACGTTCAGGTGAAGGCAGAAAAAATG GACAACAGTGACATGAATTCGAATTGCTTATGCGGTATTTGCTTTGATCACAAAAAGGAAACTGAAATGTTCAGAGGAAG CAAGTGCAACCACCCCTTTTGCGCTGATTGCATATCCAAGCATGTCGCTGCTCAGATTCAACAAAATGCTCTCAAGGTGA ATTGTCCAAAGCCTAATTGCGGTGTCGAATTGGAGCCGGAGTATTTGAACCCGATTTTGCCTGAAGAAGTCATTGTTCGA TTGGAATCCGCGAGGTGCGAGTCTTTGATCGCGGGGTTGCGGAAGACTTATTGCCCATTTAAGGATTGTTCTGTTTTGTT GGTGGATGATGGGGGTGAAGTTGTGACTGCTGCTGAGTGCCCCTCTTGCCATAGGTTGTTTTGTGCTCAGTGTTTGGTTC CGTGGCACGCGGGGTTGAATTGTAAGGAGTACTTGGCGCCTGCTGATAGGAAAGTTGAGAAGGATTTAGATAGGAAGTTT CTTGATTTGGCTAAAAATAGCATGTGGCAGAGATGCCCCAAATGCAACTTCTATGTCCAAAGAAGTAGTGGATGTGAACA CATGGCTTGCAGGTTGTGATCTTATCTCACTGGTCCTTAATCACTTTGATGCATTTCACTAATATATGGTAATTAATAAT TAATGAATGTATGAGTGATTAACTGATTATGCTTGCTTCCTCCATTTTCTGTTTACAGGTGTGGATGCAACTTCTGCTAC CACTGTGGGAAGGATTGGGTGCATGGACATATATGTGATCAACCTTAGTCCATATCAGATTTCACAGGTAGCTTCAGAAC TCCTAGCTACCATACAGAATTAGATTTTGTTTTGAATGTGTGATTTTGAAATTTGCAATTAATTTTGAAGCAACAAATGG AAGATTTTGAATTTTGCAATTATCAATTGTCTATGATATCTATTTTTATGTCTTCATATCAGACTATCAAATGCTTCTTT CTCTGTTAGGTGTATCTAGCTGTTTTATAATTGTCATGTATGGTAATGGGGTGATGAGATTTCAAGTTTCCAATTGGGTA TGTGTTTCCAATTATTGTACACATCTGACATCTTATCTCATGTAAATGAAAAGAAAGAAAGTGTAGTTTGTAATTTTGCT TTGGTGTATATGGCAAATTGGCAATAGGCATTGATATGCTGTAGCATAAAAAGATTTGTTCATTAGGAACATATATATCT CATGATTTGTTATTTACTTATTTTAGAAAGTGATAGCAAGGAACTCAGTTGACACTTGAAGACAATGGGGAAAATGGGAG TTAGCCAGGGTGAGGGAGAGGGAAGGATCGATGAGCTGAATGTGTTGGAAGAAGGAGATATCAATAGGAAATCCTAATGA AATTGGTGATGGGAGATAAAGAGATCAATAGGAATCATAGGATTGAAGTTGGTGAGATGGCCATTTACAGGCTGAGGCTT TCCTTGGTGAATTTTGAGAGTAAAATGTTCGGGAAGAGTACACACTAAGTCAGAAATAGATAGACGAGAAAAATAAAGAA TATGATATATGATGAAGTGTGAGGGGAAGACAAAGATAGAGAGAAAAAATCAGGTATGTGGTGTTAGAATTTTGGGTTAT AAATGTAACATTTAAATGTGTTAAAGCCAATATTTATGGCTAAGGGCATATGTATTATGAAAGGGTATTGTGTAGATACC ATTAGACAATATTCTAATTTAATGAAATACCAAATTAGAAATATTGAAAACTGAAATGTAACTGAAGGCAGCTACTTATA TGGGTTATGGTCCCCATTTGTAGACACGAAAAAAAAAAAACTCTCTCTTCATCCATCCAGAAGAGAATATTAGGGAACCC TAAGGTGATCTACAACTAGAAAATCACACTCCCAAACCTTCAATAATTCCCAATGACAAATTCATGTACGCTTGCGTTTT CTATTTTCATCTTGAACTCAGGTGTGAGTTCATAACATTTAGAAAACAAGGAGGATCATAATCCTAAATCAATTCTTGAT GAACCCATACTCGAATTCAAAATGAAAATAAAAAACAGAAGCCTGCCTGAATTTGCCTTTAGGAATTGTTGAAGGTTTAG GAGTGTGATCTTCTAGTTGTAGATCACCTTAGGGTTTTCTAATATTCTCTTCTGATGGGGATGGAGAGAGTTTTATTTTT GTGTCTATAAATGGGGACCATAACCCATATAAGTATCAGCCTTCAGTTACATCTCAGTTTTCAATATTTTTAATTTGGCC CCTCATCAAATTAGAATATTGCCTTGATATCTACATGATACCCTTTCATAACACATATGTTCTTAGCCATAAAATCAATA TCAAATAGACCACTTTAATTTTAACTAATTAAATAACAGCTTTATCACATTTAATTAAATGTACATTTGTGACCCAAAAT TCTAACGGTGATGTTAATATTGTTTGTGGTCTTTACAATTTAGGGCTAATTTTGAGGTGATCATTTTCACCATTCCAAAG TTTCCATGAATAATAGTCTTTCCTTTGAAAATTACTTTCTCATATATCTCATTTGCACTAAGTTGTTTTTCTTATCACAT GCATTACTCATTTTATCTTTCACATTTCTCTTTTTTATTTTTATCTCACTCGTTTGAGTGTGGTGAAATGGGTGTGAACC TATCTTTTTCCATATATTAATTTGCTTTTCATAAGTAGTGTTTATAAAAGAGTTTAATAGCTATGAAGCGCAGCATAAAA TAGTTTTACAGATGCAATATTCACTATTTTAACATATCATAAATAAACTCTTGCAACATGTCTATTTTTTTTTTTTTTAC AATTTTAGTGATGTAAATTATATCCTTATTAAAAGCATTATTTTTGGATTATTGAAAAGCTTTGAATACAATGATTGAGC ATATGCATAACCACGGGTTTGCTGTATGCATGCCTCGTTTGGGCATTCAATTTATTTGAGTTTAAAGTGATTCTAAATTA AATGCACTATCTATGCTTATAACAGATGGCTGAACAGTTGGAAGTTCGCTTGGCAATCTAAGAAGTTCAAGCTATTATTC ATCACAATGAAAGGAAATTTGATACATGGTATTGTAGCTAAAAGAGCAACGAAACTCTATGCTTTCCTCTTTCAGTATTA TTTTCCTCCAAACTTTATAGTTTTTATAAAGTTTTAGTGTTTCATTGGAGTGTTCACGGATTGAATTAGTTCAAATTTGC TGCAAAATAGAGTATGAGCCGATCAAATTCAATTAGTTTGTTTTTTTTTTAAATAATTAGCAAATTTAAATGAAACCAAT CCGATAAAAGTTAGTTCTTGATTGGTTTCGTTTGAGTTATCAGGCTGGTATATAAATTTAATTATTTATTAAATTTTAAT TTTTTATCCATGTTTTCACTTTGGAAAATCCTATAGATTACGAAAACTGAAATGCAATAATCCAAGTGGCTTTAGTTTTT ACCTTTTTATATAACTAAGCATGTTTTCCGTTTTGATTGAGTTAGGTAGCATTTAGTAGACAGTAAAAAGAGAACAAAAT GGGACATGAGTTTAGCTATACAATCAAGGATCTTCAAATCATTTTCAAGAATTTCATTATGTAAATTTATCTATATGCTT TTGCATGAATTTTTTTCTTCCAATTTTCGTAGTAAGTTAGAATTTTCGATTTTTGATAAAGCTATTGCGGATTTGCGGTT GTAAAGTAAGAAAAATGATTTTTATTTAAAATTTATACACAATGATATTTGTAGTTAATGTCACTTCTTTAATTTGATTG AAAAAATAAAAACATGATCAGATACACGAGCAGGTCCTGAATTATGCCTTGTTTTTCTTCTGCTCAAGCACTGCTGTGTG TGTTACAACCTTACCCATCTTCATATGGATTGGGGTCTGGGGAACAGTTCTATGGAGTTGCTCTGGTATGTGGATTTTTG GTCCCTGCACCAACTATGATCATAGCCTTCCTCGCTGAGTTGCTGGCTATAGGGCCACCTTTTGTGCCTCAGATTGCTTA CAAGTAGTGGAAGTCCTTTACGACAACGTGGATGTCTCTACATTTTGGGATAAGGATACTATCTTGCCCGTTAGGATGTT ACTCACTTGACTTGAGATTGACATGCTTCGGTGATTCATATCCCTCGTGAGAGGAATAATGCGATGGAATTCCTCGCTCA TCTAGCA
CDS sequence (LotjaGi6g1v0133500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGGAAATTCACCAAACACGACGAAGAGGAAACTTCCCTCTAATCATCACGATGAAAAGAATAAGAAAACACACGT TCAGGTGAAGGCAGAAAAAATGGACAACAGTGACATGAATTCGAATTGCTTATGCGGTATTTGCTTTGATCACAAAAAGG AAACTGAAATGTTCAGAGGAAGCAAGTGCAACCACCCCTTTTGCGCTGATTGCATATCCAAGCATGTCGCTGCTCAGATT CAACAAAATGCTCTCAAGGTGAATTGTCCAAAGCCTAATTGCGGTGTCGAATTGGAGCCGGAGTATTTGAACCCGATTTT GCCTGAAGAAGTCATTGTTCGATTGGAATCCGCGAGGTGCGAGTCTTTGATCGCGGGGTTGCGGAAGACTTATTGCCCAT TTAAGGATTGTTCTGTTTTGTTGGTGGATGATGGGGGTGAAGTTGTGACTGCTGCTGAGTGCCCCTCTTGCCATAGGTTG TTTTGTGCTCAGTGTTTGGTTCCGTGGCACGCGGGGTTGAATTGTAAGGAGTACTTGGCGCCTGCTGATAGGAAAGTTGA GAAGGATTTAGATAGGAAGTTTCTTGATTTGGCTAAAAATAGCATGTGGCAGAGATGCCCCAAATGCAACTTCTATGTCC AAAGAAGTAGTGGATGTGAACACATGGCTTGCAGGTGTGGATGCAACTTCTGCTACCACTGTGGGAAGGATTGGGTGCAT GGACATATATGTGATCAACCTTAG
Protein sequence (LotjaGi6g1v0133500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGNSPNTTKRKLPSNHHDEKNKKTHVQVKAEKMDNSDMNSNCLCGICFDHKKETEMFRGSKCNHPFCADCISKHVAAQI QQNALKVNCPKPNCGVELEPEYLNPILPEEVIVRLESARCESLIAGLRKTYCPFKDCSVLLVDDGGEVVTAAECPSCHRL FCAQCLVPWHAGLNCKEYLAPADRKVEKDLDRKFLDLAKNSMWQRCPKCNFYVQRSSGCEHMACRCGCNFCYHCGKDWVH GHICDQP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 26 | 26 | - | – | |
| MobiDBLite | 12 | 26 | 15 | - | – | |
| PANTHER | 13 | 246 | 234 | 1.7E-90 | ||
| PANTHER | 13 | 246 | 234 | 1.7E-90 | – | |
| Gene3D | 39 | 126 | 88 | 4.9E-19 | ||
| SUPERFAMILY | 41 | 122 | 82 | 1.55E-15 | – | |
| ProSiteProfiles | 41 | 247 | 207 | 24.1 | – | |
| ProSiteProfiles | 45 | 90 | 46 | 9.952 | ||
| SMART | 45 | 92 | 48 | 0.049 | ||
| ProSitePatterns | 63 | 72 | 10 | - | ||
| SMART | 113 | 175 | 63 | 5.6E-13 | ||
| SUPERFAMILY | 127 | 179 | 53 | 1.55E-8 | – | |
| Pfam | 129 | 175 | 47 | 1.1E-10 | ||
| SMART | 132 | 209 | 78 | 7.5 | ||
| SMART | 184 | 244 | 61 | 0.067 | ||
| Gene3D | 184 | 246 | 63 | 2.1E-8 | – | |
| SUPERFAMILY | 193 | 243 | 51 | 1.84E-13 | – | |
| Pfam | 197 | 243 | 47 | 2.7E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi6g1v0133500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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