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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0135100 |
| Transcript ID | LotjaGi6g1v0135100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Neutral ceramidase; TAIR: AT1G07380.1 Neutral/alkaline non-lysosomal ceramidase; Swiss-Prot: sp|Q0JL46|NCASE_ORYSJ Neutral ceramidase; TrEMBL-Plants: tr|A0A151UAA4|A0A151UAA4_CAJCA Neutral ceramidase; Found in the gene: LotjaGi6g1v0135100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:38966820..38969449) extracted from Lotus japonicus Gifu genome v1.2.
ATGCATTTTTCAAGCGATAGTGCCTATGTGTTGGCCTATGTATTTCTTTTTGTGATTCATACTTATAATTCTGCCAGAAT TCTCAACAATGGCTGGAAGGCGTCTTCGAGATGCAGTGAAGACAGTGCTAAGTAGCAACAGAGATTTTGATAATGTTCAT GTTGTTATAGCTGGATTGACTAATTCGTATTCTCAGTACGTGACTACATTTGAAGAATACCAGGTGCAAAGATATGAGGT CAGTTCTAAGAAACACAAAGCTTGCAGCAAGTATTTCATAGATTACCATAGCTAGGACAAATACAATATTAATTGAAACT CTTTTAGTGATCCAAACTCTTGATCATATCGTATTACTGTGTATTAACAAGATAAGGACATGGAGACACCAATGGAGAAT GGACTGACAGACTTCTATAGTAGGATTGAAAAAAATTCTTACTTTTGTTTAGTGTAGCTTGTTACATTAGAATAACATGG TGCACACTAGTGTCTTTGTGCCTAATAGAATTTGGGAGACCTAACGCTACCCCAAAAGCTAGCATAGAGGTGAGGATTGT CTTCCTATATATAAGGGCTATCTTAGTCATATATCTAGTCAATGTAGGACTTCTCAACACACCCTCTCATGTCCAAGGTT GGACATCTGGAGTGTGCAATGTTCAAGAATGAACATCTGCGGGTGGCCTATACACGCGTAGTTTGCACTTAACGAATCTA GGATAAGCTCTGATATCATATTAGAATTTGAGAGACCTAAATCTTCCCCAAATGCTAGCTCAAGAGATGAGGATTGTCTA CCCATATCTTGGCCGTATTTCTAGTCAATGTGGGACTTCTCAATAGTGCCAAAGGATCATGATCCTCTCATGTTGACACC TCACATGTCTATCTCTCTCTTCAAATGTACTAAAAGTTAGGATCCTCTAAATATTTATGAAGAGAGAGGTAGACACAATG CTTTATTTAACATTGTCATATAATATGAAAGGATCTTAATCCACGTAGAAGCACACACAAGCATATGGAGAATTTAGCTG TTTGTGGTAGACAAATCATTGTGCACCTCTGATGCATGGGTACGGCCAAATTGGCCGCGTACCCGTACCGGGTACGTACC CGGTACGCATACGCGTCGGGTACGCATACGGTACGTACCCGGTACGTACCCGTTACCAAAAAAAAAAGGGGGGGTTACGG GCCAAAACGACGTCGTTTTGGCCTTTAAAAAAAAAAAAAAAAAGAAGCAGAACCCTAAATCGCGTGAAAAGAAGGAAGAA AAGAGAAGCAGCCACGACTTTAGTAAATAAAGAAACCCTAAACTGGATTGCTTGTTGCTTGATTTCTCCCTTCAGTCTTC ACGGCTTCCTACTCGAATCAATTGCTCCCTTTCTCTTTCTCTTTCTCTCTGAGGTAAACTTTCTTTGACTATGTCCTCTG GCTCTGTTGATCAATTGTGACTCTGAGTGTTTGAGTGAAGAGGGTTGTGTAATACTGTGAGGGCAATGGGTAATCACCTG AGTGAAGAGGGTTGAGGGACGCTGTGGGTGAGGGGGTGAGGCGGTGCCCGGTGGGTGAGTCATGAGTGAGTGAGTGAGTG AGTGAAGAGTGGGTGAGGCGGTGGGTGAGTGAAGACTGAATTTGAGTGTGTGATGTGTGGCTGTGAGTTTGAGGGCGTGA GGTGAGTGAGTGAGTGAAGGCTTGAAAGAGGAAAAAGTGAGAGAGACAGAACCCTGAAGGATGAGTGTGTGAGTGAAAAA GTGGGTATGGCATATGTGGCATTAAGATGAGGTTGCCCACTTGCCCTGTATTCAATTTGGTAGCAAACAGCCAAAATTGA CTTCAAATCTGAAGAAATAATTAAGATAGGATACACATGTATCTAACGTACCCGTACCCCTGTTTTTTCAAAAATCGCGT ACCGCGTACCCAATACCGTACCCGTACCCGTGCAACACAGTTGTGCACACTTGTGCATATGCATCAACACACTGGCATAT GGACAATATGACAATGATCATAGTATTTTTTCTATAGCTAATCTATATGTAACTTTCTGATTTCTATTTTCATGTTGTCA GGGTGCTTCCACGCTATATGGCCCACACACACTGAGTGCATACATTCAGGAGTTTAAGAAGCTTGCAAAGGCTCTCATCA ATGGCGAACCAGTAGAACCTGGTCCACAACCCCCTAATCTCTTGAACAAGCAAATAAGTTTACTCCCACCAGTTTTGGTG GACGGAACCCCTTTTGGGGCAAGTTTCGGGGATGTATGCTCTGATGTACCTCAGAACTCCAGTTTTAAGACCGGTGACAC TGTGACTGCTTCGTTCTGGTCCGCGTGCCCTCGTAATGACCTTATGACTGAAGGCACCTTTGCCCTGGTGGAATTTCTTC AAGAAAAGGACACTTGGATTCCTGCTTATGATGATGATGATTTCTGTTTGCGCTTTAAATGGTCAAGGCCTCACATACTC AGCACTACGAGTAAAGCAACCATAGAATGGAGGATACCACAGGGTGTAACTCCTGGTGTCTATAGAATAAGACATTTTGG CGCTGCAAAGCGCTTATTTAGATCAATTCAACACTTTACAGGTTCATCCAGTGCGATCGTAGTGGCATAA
CDS sequence (LotjaGi6g1v0135100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGGAAGGCGTCTTCGAGATGCAGTGAAGACAGTGCTAAGTAGCAACAGAGATTTTGATAATGTTCATGTTGTTAT AGCTGGATTGACTAATTCGTATTCTCAGTACGTGACTACATTTGAAGAATACCAGGTGCAAAGATATGAGGGTGCTTCCA CGCTATATGGCCCACACACACTGAGTGCATACATTCAGGAGTTTAAGAAGCTTGCAAAGGCTCTCATCAATGGCGAACCA GTAGAACCTGGTCCACAACCCCCTAATCTCTTGAACAAGCAAATAAGTTTACTCCCACCAGTTTTGGTGGACGGAACCCC TTTTGGGGCAAGTTTCGGGGATGTATGCTCTGATGTACCTCAGAACTCCAGTTTTAAGACCGGTGACACTGTGACTGCTT CGTTCTGGTCCGCGTGCCCTCGTAATGACCTTATGACTGAAGGCACCTTTGCCCTGGTGGAATTTCTTCAAGAAAAGGAC ACTTGGATTCCTGCTTATGATGATGATGATTTCTGTTTGCGCTTTAAATGGTCAAGGCCTCACATACTCAGCACTACGAG TAAAGCAACCATAGAATGGAGGATACCACAGGGTGTAACTCCTGGTGTCTATAGAATAAGACATTTTGGCGCTGCAAAGC GCTTATTTAGATCAATTCAACACTTTACAGGTTCATCCAGTGCGATCGTAGTGGCATAA
Protein sequence (LotjaGi6g1v0135100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGRRLRDAVKTVLSSNRDFDNVHVVIAGLTNSYSQYVTTFEEYQVQRYEGASTLYGPHTLSAYIQEFKKLAKALINGEP VEPGPQPPNLLNKQISLLPPVLVDGTPFGASFGDVCSDVPQNSSFKTGDTVTASFWSACPRNDLMTEGTFALVEFLQEKD TWIPAYDDDDFCLRFKWSRPHILSTTSKATIEWRIPQGVTPGVYRIRHFGAAKRLFRSIQHFTGSSSAIVVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 232 | 232 | 3.9E-142 | – | |
| PANTHER | 1 | 232 | 232 | 3.9E-142 | ||
| Pfam | 1 | 66 | 66 | 8.0E-29 | ||
| Pfam | 68 | 229 | 162 | 4.5E-54 | ||
| Gene3D | 99 | 232 | 134 | 1.6E-43 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | N-acylsphingosine amidohydrolase activity | Catalysis of the reaction: N-acylsphingosine + H2O = a fatty acid + sphingosine. | ||
| Biological process | Ceramide catabolic process | The chemical reactions and pathways resulting in the breakdown of ceramides, any N-acetylated sphingoid. |
Expression pattern of LotjaGi6g1v0135100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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