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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0135700 |
| Transcript ID | LotjaGi6g1v0135700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nuclear transcription factor Y subunit; TAIR: AT5G12840.2 nuclear factor Y, subunit A1; Swiss-Prot: sp|Q9LXV5|NFYA1_ARATH Nuclear transcription factor Y subunit A-1; TrEMBL-Plants: tr|A0A0B2REF6|A0A0B2REF6_GLYSO Nuclear transcription factor Y subunit A-1; Found in the gene: LotjaGi6g1v0135700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:39152372..39157541) extracted from Lotus japonicus Gifu genome v1.2.
GAAGAAGACTCATGAGTCATGACTTAAGAAGACCAAGACTTTGAGAGTGTTATAATTATTAATTATTATTATTATCTTTT TATTTTCAAAAAAATTATTATCTTTTTTTTTGAAATATCTTTTATTTTATTTTTCTCAGTTATTATTGGTGGTGTTATTA ATTTCTGGTGCTAAATTGAGAGAACTCTCTGTATTCAGAGAGAGAGAGAGAGTGAGAAGAGGGAGGGAGACACAGAGAGA GAGAGAGGAATCAGATTAGCCCCTTTGAATTTCTCTATCAAAATCTGAGGACCCAATTTCTAGGGTTTTGTGGTTCTTCT CCAGGTAAGTGAGTGGTTTGATTTGCTTCGATTTTCTCTTGATTGATTTGGGGAATTTCGCTTGATTGATTGCGTGATTC GTTACTTTCTGAGGCTTCTCAGGGATTAGGGTTTTTGGGTTTGTTCTTCTGTGCAGAATTTGGGGCTTTTTTTTTTAGAA TCTGGGTCGAAGAATTCTGTTACTGCATGGCTTGTTCTGTGGGAATTCTTGTTTGGAATCATGAAAAGATTAATTTTTTT TTATGGCGGGAAGTTTTTTTCTCCCTTCTGAGCTAGGTCTGATTGTGAATGTGGGGATAAGAGGGAGAATTGGGTGGTAA TTTTTGTGAAATTGTGTGAAACAAAGCTTCTTATGTTGTGTACGGTTGTCTGGCCGACAGTTAGATTGCATAGTTAGCAT GTGCTTTTGATTTCCTGTGGTACTGTTTGTCTAAATAAGAAAACAAAAAAATTGTAGCATAGTGTTACAGTCTTTGTTCC TCTGGTTAGCTATAAGAGGAAAGGTTACAACTTCAGTGTATGACTGCATGGTCAAGTAAATACAAAACGAAACAAGTTTT ATAACTTTTGTTCTGCTAAGAATATCAAATTAATTTTTATGGTGATCATGAGTTACCATCTTTGTTCCTATGGTTTATCA TGTTTAAGTGTTTAACCTTATGAAGCTTGTCAATGTTTTCTTTTCGTCAGGGCTGTTTTTTTGGATAAGGGGTAAGATTT TTATGTCACTCTATTTACTATTTTGGTAGGGATTTGAAGACATGCAGTCTAAGTCTGAAGCTGCAAATCGATTGAGGTCG GATCCTCATTCCTTTCAACCTGGCAGTGTTTATTCTGAACCTTGGTGGCGTGGTGTTGGGTACAATCCTATGGCCCAAAC AATGTCTGGGGCAAACGCATCCAATTCATCCTCTGAAGGCCCTAATGGTGATTCAGAATCCAATGATGAAGGCCAGTCTT TATCCAATAGTGGGATGAATGAGGAAGATGATGATGCCACTAAGGATTCACAGGCTGCTGATCCTAATCAATCAGGTGCT CTAGAATATCATATTATCATGTAACTATTTACCAACAATGAAATAAGGAAAGATAAACAGATTGGCACTTCAAAATTTAT ATTTGATTTTGATGTAATTATTTCATTCCTCCAAGTATTATCAACTTACAGAATACTGAAATACATTATTCTTTTCTTGC CAGGAAATCATGGTCAAGAACAGCAAGGGGTGCAGCACGCCACATCGTCTGCTCCGATACCACAACTGGAACTTGTTGGT CATTCAATTGTTAGTATTTGCCCTTTTGTTATTACAGACACGGTGCTAATGTCAATGACTTTATTTAATAGCATAAGTCC TTGCTGATTCATGCATTTATTTTGATGGAAAATCTGTTATTGTAGAACTTATAGTTCATGCATTTGGATTGGATGGGACT CCTACTATCCTTCAAATTCTTTTGATGCAGGCATGTGCTCCAAATCCCTATCAGGATCCATACTATGGGGGCATGATGGC AGCTTATGGTCACCAGCAGTTGGTATGTGGCATTAATCTGTGTTTATGCACTAATAGAGATTACTGGAAATGTAACCGTT GTTCATAACTCACAATATAATTGCTTATTTGGAATTTTCATAAATTAGTTTGATTAGAATTATGATAGTGCATAATCCTG AAGGATATGTTCTCATCATAATGGTAATTTGTTTTGTTTCGTTTGGTTTATTGTTATTTATGAAGCAATACGATATTTGG TTAACTGTGATATAATTAACCATGTGATATTTTTACTATCAGGGGTACGCTCCTTTTATAGGAATGCCTCATGCCAGAAT GCCTTTGCCCCTTGAGATGGCTCAAGAGCCTGTTTATGTGAATGCCAAACAATACCAAGGAATTCTACGGCGTAGACAGG CTCGTGCTAAAGCAGAGCTTGAAAGGAAGCTAATAAAATCTAGGAAGGTATAGATGCTTAAAATCTTTCATAATTGTTGA TTCTTAACTGTAGCTGGATGCTGCTTTATTATTTAGGCAAGAAATCTAGCCATATTATAGGTTTGAGGTATTTTTTCTGT TATGTTTCCTCTTACTCTCCTGAACCTTGTTACTCTGTGCTGAGCTAAATGAAATTGCTAGGACATGACTAAATTTTAAT TTTTCTGTGTAGATTGTCTCCTAAATCTTAATGATACAATATAAGTTGAAAGCCTTGTTACCTCTGGACTTTAAAGGATG TTAAAGTCTGTAAGAGAGCTTGGTGTAATGCTTGTTGACTTCAATTTCAAATCTTCAAAACTTTTTTTCATCTTAAAAGA TTATAACATCGTTACCCATTGCTAGAGCAAGGGCTAAGTGGCTAACCTCAAACCCTGAAAACGTTTTAAGGCCTAGCAAT ATCTAAACTATATACCTTTCAACATGATGAAAGCAGTAAAAGAGACTAGCATAATACCTTTCAACATGATAATGCTCCAC CAAATGCATCCTTGTATAGAATGTGGCTTGGTTGGGTATTGGGCTAATTGGAGTTTGTATTAACATGCGTACTCATCAGT TCTACATTTTACCATTTCGGATTTCTGAACTTGACTTCTCGCAAGTCGCAAACAACAGTATTCTTACCCTAGCAGCCCCC CTGAAGAGAACTCAGAAAAGAATTTGCAGAGGTTGTCAGAAGAAGTTGGGGTGGGGGGATTTACCTGTATACTACCTCCC CTGGTTTGGTTTGCAAGGAGAGAAGACTGAAAACAAAAGTAATTTACCTATGACTAGTAGAATAGGAAGCATCTGAAACT TTGATTTGTGACTTGGAAGTTGGAACTACTATGAAGAAGCTTTAGAACTGTGGCTTGCATGATGTCCAAATGAAGAAGCT TGAAGCAATGTTGGTAATAGAGGGTTGCTAGTGCTAGAGATTACTAATATAAGGGCAATTTGAGAAAATGTCATGAGAGA GCTGCTAGTACTCATCTTAAATTAAGTCATCTCCCTCTGCTCTCGAATTTTGGAGGAGAGGAAAAAATTGGAGGGGAGAG GTTTTTTTTACCCCCTCACTTTCCCTCCTCACCTTTCCAAACACTTCTGAACCAAATGAGGGATCTTTATTAACACCCTT CCCCTCCTCTCACCTCAACTCCATTCTTCTCAGTTAAAACAGTTAGTTAGATTTAGAGTAATGTTTCTTTTCCCTTGGGA GATTCATCTCTTTTTCTTCAGGAAGCTATCTTTCTACTTGATGTTTTGATTGTCATCTGGTAGTTGCTTAGTCTTTATTT TGGAAACTACTTTCACAATATATCAATGTGCATTGAATAGGAAAGTCTGTGTATGACATTATTACCTACTTCCTATAAAA AGTAAACAAGAAATCTGCTGCTAACACAGTAGCCTCAACAATAAAACTTTGATCTGAGGCACTGATATCTATTGTCTCCG TCATTGTGCTGAATTAGTGATGGGAGTTCTCATCTATTCTAATGGAACTATGGAAGAGCGAACCTTCATGAACAGCTATT ACCCAATAGCTTCTATTGGAGGCTCAAGGAAGTTAGCATTGTATCCTTGTCTGTAAGAATTTGGTTGTAAAGCATTCAGA TGCAGGCTGTGGAAATCATATTAGGGCACAAATATCAAGAAACTTGTTATGACCAAGCTTGTTGAATAATTTTGATATGT AAATTTTTCATCGACTCCACCTTTTTACAAACAGTAATCTGGTAAAAGTTGAAAAGCAAATAGAGTTAAACAGTGTATAT TCAGTTATTTTTTATTTGCCTATACTAAAACAATGTTTTGAATGAGACAGAATTTGGTTCTTTTTTATGGCTATGCTAAC ATCTCTTTTGTGCAGCCATATCTTCATGAATCTCGGCATCAGCATGCTATGAGAAGGGCAAGGGGTAGCGGAGGACGATT TGCAAAGAAAACTGATCTTGATAACAACTCAGGCAAGGAAAAGGATAATGGTTCTGGTCCGGTCCTGTCATCACAGTCAA TTAGTAGTTCTGGTTCCGAACCTTTACCTTCTGACGAAACATGGAATTCTCCTCACATGCAACATGATGCAAGAGGATCA AAAGTGGGCGACAGATTTGAAGCAGCCAATTATGAGAATGGTAGTGGCTCCTACCATAACAATAATGGTTCGCAATCTTC AAGGTATCATCAGCCTTCAGGTGAAAGAGTGGACGAAGGGGACTGTTCTGGCCAGCAACGCGGAAGCGTCTCCTCTAATG AGGCATCGCAGAGGCGTCTTGCTATTCAGTAGAACCGTGCATGGGGGATAGATGCTGAGGTTGGTTTGTATCCTAGTGAT ATATTTGGTGAATACCTTGGTTATCTATGAAGTATGAACATTCTTGGCAATATATATATGCCAAGCGGCAAATCATTCTT GGCTTTGTTCTTGTGTTTATGGGTGTGATGATATGGGGGAAAAGAATGATGTTGGGGTAATCTGATTTCTGTTGAAGTCA ATGAATCCTTCATTCTTTTCTCATTTTTGCATTTTGTACAGAGTTGTAGTGGGTAGTCAACTCCAGCTGATAATGACATG GATGGATGGTCAGGTCAGGTCAGAAGACTATGGAGAAACAAACTCTTGATGTACCAACTCTCGTTTGATGGGTTTATCTT TGTGTAACTCAAAACGGTTGTTAATTTTAACTTGGTACATTATTATTAAGAGAATGACATGCATTTAGTATTGTTTGTTA GCCTTGTTATTTTTGTGACTATGATTATAACAAATTTAAATTTCAATCACCTCTAGCAAAGATGTAAAAAGAATTAAAAA AATTATCATATTCCTTAACTTTTTTTATGCCATGTAATATTGGTCACCAG
CDS sequence (LotjaGi6g1v0135700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGTCTAAGTCTGAAGCTGCAAATCGATTGAGGTCGGATCCTCATTCCTTTCAACCTGGCAGTGTTTATTCTGAACC TTGGTGGCGTGGTGTTGGGTACAATCCTATGGCCCAAACAATGTCTGGGGCAAACGCATCCAATTCATCCTCTGAAGGCC CTAATGGTGATTCAGAATCCAATGATGAAGGCCAGTCTTTATCCAATAGTGGGATGAATGAGGAAGATGATGATGCCACT AAGGATTCACAGGCTGCTGATCCTAATCAATCAGGAAATCATGGTCAAGAACAGCAAGGGGTGCAGCACGCCACATCGTC TGCTCCGATACCACAACTGGAACTTGTTGGTCATTCAATTGCATGTGCTCCAAATCCCTATCAGGATCCATACTATGGGG GCATGATGGCAGCTTATGGTCACCAGCAGTTGGGGTACGCTCCTTTTATAGGAATGCCTCATGCCAGAATGCCTTTGCCC CTTGAGATGGCTCAAGAGCCTGTTTATGTGAATGCCAAACAATACCAAGGAATTCTACGGCGTAGACAGGCTCGTGCTAA AGCAGAGCTTGAAAGGAAGCTAATAAAATCTAGGAAGCCATATCTTCATGAATCTCGGCATCAGCATGCTATGAGAAGGG CAAGGGGTAGCGGAGGACGATTTGCAAAGAAAACTGATCTTGATAACAACTCAGGCAAGGAAAAGGATAATGGTTCTGGT CCGGTCCTGTCATCACAGTCAATTAGTAGTTCTGGTTCCGAACCTTTACCTTCTGACGAAACATGGAATTCTCCTCACAT GCAACATGATGCAAGAGGATCAAAAGTGGGCGACAGATTTGAAGCAGCCAATTATGAGAATGGTAGTGGCTCCTACCATA ACAATAATGGTTCGCAATCTTCAAGGTATCATCAGCCTTCAGGTGAAAGAGTGGACGAAGGGGACTGTTCTGGCCAGCAA CGCGGAAGCGTCTCCTCTAATGAGGCATCGCAGAGGCGTCTTGCTATTCAGTAG
Protein sequence (LotjaGi6g1v0135700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQSKSEAANRLRSDPHSFQPGSVYSEPWWRGVGYNPMAQTMSGANASNSSSEGPNGDSESNDEGQSLSNSGMNEEDDDAT KDSQAADPNQSGNHGQEQQGVQHATSSAPIPQLELVGHSIACAPNPYQDPYYGGMMAAYGHQQLGYAPFIGMPHARMPLP LEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHAMRRARGSGGRFAKKTDLDNNSGKEKDNGSG PVLSSQSISSSGSEPLPSDETWNSPHMQHDARGSKVGDRFEAANYENGSGSYHNNNGSQSSRYHQPSGERVDEGDCSGQQ RGSVSSNEASQRRLAIQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 107 | 107 | - | – | |
| PANTHER | 5 | 271 | 267 | 2.2E-96 | ||
| PANTHER | 5 | 271 | 267 | 2.2E-96 | – | |
| MobiDBLite | 38 | 73 | 36 | - | – | |
| MobiDBLite | 84 | 107 | 24 | - | – | |
| SMART | 163 | 224 | 62 | 7.4E-36 | ||
| ProSiteProfiles | 164 | 224 | 61 | 37.979 | ||
| Pfam | 166 | 221 | 56 | 1.3E-26 | ||
| PRINTS | 167 | 189 | 23 | 3.7E-24 | ||
| ProSitePatterns | 169 | 189 | 21 | - | ||
| MobiDBLite | 197 | 337 | 141 | - | – | |
| PRINTS | 198 | 221 | 24 | 3.7E-24 | ||
| MobiDBLite | 199 | 218 | 20 | - | – | |
| MobiDBLite | 219 | 233 | 15 | - | – | |
| MobiDBLite | 234 | 268 | 35 | - | – | |
| MobiDBLite | 287 | 305 | 19 | - | – | |
| MobiDBLite | 318 | 337 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Cellular component | CCAAT-binding factor complex | A heteromeric transcription factor complex that binds to the CCAAT-box upstream of promoters; functions as both an activator and a repressor, depending on its interacting cofactors. Typically trimeric consisting of NFYA, NFYB and NFYC subunits. In Saccharomyces, it activates the transcription of genes in response to growth in a nonfermentable carbon source and consists of four known subunits: HAP2, HAP3, HAP4 and HAP5. |
Expression pattern of LotjaGi6g1v0135700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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