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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0136100 |
| Transcript ID | LotjaGi6g1v0136100.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD-repeat protein, putative; TAIR: AT5G56130.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q9FKT5|THOC3_ARATH THO complex subunit 3; TrEMBL-Plants: tr|A0A059BRQ3|A0A059BRQ3_EUCGR Uncharacterized protein; Found in the gene: LotjaGi6g1v0136100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:39213689..39221168) extracted from Lotus japonicus Gifu genome v1.2.
GGGGCACCAAACTCAATTCCCTGAATTTCCTAGGTAGAATCAAACACAGTGGTTACAACAATCACAGTGTTTTCTACTTG AACCTCACAAAAGTGCCCTCAGATTCGTTCCTTGCAACCATGGAGGAACAAACCCCATTTAAGAATCTCCATAGCAGAGA GTATTCTGGTCACAAGAAGAAGGTACCCTTTTGCTTCCTTTCTCTTTCATGGTAAAACGCGTTCAAAGTTCGAAACTTTT TGTGCTTGAATGCTTCAGTTCATGTGAAAAACAAGCCCTTTATCAATGTTTATGTTTCAATTCTGATATGGGTGTTTTTT TTTTTTTGTTTGCTTTCAAATAGGTGCACTCTGTGGCCTGGAATTGCATTGGGACCAAACTTGCCTCTGGGTCTGTGGAT CAAACTGCTCGAATCTGGCATGTTGAGCAACATGGGCATGTAAGTTTACTCCTAATAGCTCTTGGAAGAACAGGAGCTGA GCAAGTTCATATCTTTTTTTCCCCTTTGTTTGATTGTCATGATTGATTTAAATGGGACTGTTTCATTTCATGGATTAGGA GACAGAAGCTATTTATGTTAGCCTTGGTCTTAGGGTTGTCTTTTAATTTGTTCTTCCTGAATAGGACTTGTGGGCTAATA GAATAATCATGACAAGCTACATAGAGATAGTTCATTTGATTAGGAAAGCATAGGTTAATTTTCCTTAAGTCTTTCAACTT TTTTTCTTAAGGGTGTGTTTCAGAGTTTTTAGGGGAGGGGAGGGGAAGGCTATGAAGGGACGGGGAGGAGAGGGCAAGAG AGGGGGAATCGGAGTAAGCCCTTCCCTTGTTTGGAAGTTCCAAATTGCCCAAAACCCCCAGATTTGGGGGAACTAATGAA TACAACTAAAAGAGGATTTTGGAGGGTTTTCAGAAATACCCCGAAGTCTTCTCCCCTATTTTAAAATCTCTCAAACAGGG GAAGGGCTTCTCATAAGCCTCCAAAACTCAACTCACAAACACACCCTAAGAAATGTTGTAGGTTTGCTGTTTGTAAAAGG TTTAAGTTCCCCTCACGTATTGATATCTTGTTTAAGATTTGCCCCTTTGAAATCACCGAGGAAATTTTAAGTAATGTCTT TTATAACTTTTGGTGGTTTAGATAACAACATGACGTCTATCTAAAAGATTTTATTTGGCCTTGGGTAAAATATGTTCTTT CACATATGATTTTAATACTTCAAACTTTTTGAATGCGACTTAACCAAGGGTTAATCCTTACTCCTTAGAACCTGTTGGGA AAAGAAGAGTAAAACTTAGGATAATATAGACATGCAGCCAGGGCCCAGGGTAGGAGAAGGGCTAGGGGTCAGTTGAGATC AGTATCTAAGAATCACCACTCTTTGGTTACCTTCCCTGATACATAATGACAGTAACCAGAGGATGTTTCTATTAGAATTC GGACTTGTTAGATTAAGTCAAGAAATGCATTGCAAATTATATATGATCAGAAAGAAAATTGTTGTTGAAGCTAGAGTGAA CTAGTGTCAATTGTGAATTTTTCGACAGGAACCTTTCCAGTTATGAAACTTTAGGCTACTATAAAGGGATTTTGGGGTGG AGGGGTGTGTTGGGAAGCTGAAGCCCAAAGGCACCTTTTTGCTCAAAGTTTCTCTTTCAGTATTGGCTGCTACTATTATG TTATTGTAGATTGTTTTGTTCTTCTGACGTGGTTAGAATTTGATTGTTTCATTTTATATGTGGGACGGGGTTGGCTGGGG GTTTATTATAGGGTAAAGTCAAAGATATTGAATTAAAAGGCCACACTGATAGTGTGGATCAGCTATGCTGGGATCCCAAA CATGCCGATCTGATTGCGACTGCATCGGGTGACAAGACCGTTCGTTTGTGGGATGCTCGTAGTAAGTGAAAATCCATTTG TTACAATTTAATTATTATTCATATCAGAAGGAAGAAGTTATGACCTTTTATATTTTGGGAGACTTGTAATGAATTGTACA GTTATATTATCTTAATGCCGGTCACAATTAACCATATGCTCATTGGAATAAGCAAACGATTGGTTTCTTTGTTTGAAAAT GTTTTCCACATCTTAGATCAATGCTTTTGTTGATGATTCATTGAAAAAGAAAGTTAACTGTAAATATTTATTATCGTTTG GAGGTCCAAAGAAGGGGCTTGTGGAAAAGCTACTCATATTTGATTTCTGCAGGTGGAAAATGCTCACAACAGGCAGAACT TAGTGGGGAGAATATCAACATTACCTACAAACCTGATGGGACTCATGTAGCTGTGGGCAATAGGGTATGTTACACAATTG CTTCATTTGCTTAAAGCTCCGAGTATTGTGACTGTATGTGTTAAGATCAAACTATATTCTCTTGCTGTTTTTCATCATAT GAAGTCTTATGCGGTTTTGTTTTCCACAGGATGATGAATTAACAATACTGGATGTTAGGAAGTTCAAACCAATTCATAAG CGCAAATTCAACTATGAGGTATTAACTAGTTTTAAGTTCAAACCAATTCATAAGCGCAAATTCAACTATGAGGTATTAAC TAGTTTACACTTCATTCTTGCTGATTTTTCTGTTTTCGTCAGTTTGTTAAGTCTTATTTTTAGGCTGAGGAATGAACTTA TGAGGAACTTGTCTTTACACCACATTCTTATAATGTACATAAAAATGTGAATTTGCTATACGCTAATTGGTTTTCTTTTT TTACAAACCACACAACTGTTTTCAGAAGTTTGAATTGGAATTCGCAGTCTGATAAAGGGCTTATTAGTTGGAGTGTAAAT TGCATATTGTTTTATAATCAATATAAATTTGTGGTCAATTGGAAGAACTAAATGTCCTAGTATCAAACCATCAGATAACC ATGAATATCATGTTTGTATTCTGTTAGAGAATTCTTGTATGCCTGTTTGAGCCAACATGTCAAATAGTTATGTTCTGCCT TGGAATGTGTGTTTTCACATTGAAGCATTTTTCCAAACAGGCTAGAATTTGCATGTTTAAGTTTTTTTACTTCCATATTG GTCGAGTATGAACAATTTCAGTTTCCATGCTTTGAAACCTGACGCGTCTGTTAAAAACAGAAAGAAGCCGAAGAGCATTG TTTTTACTTACAATTAATGGTAAATCTGAGAAACATTTCTTGTTTTTTTTATCACAATATTGTACGCAGGACACACATTA CAATGATTGAACTGGATCCCTAAACATTAGGGATGAAAATTTTGAAAAATGGAAAGTATGCTTAATTAACTTTCAATGGT AAGTGTATCACGAATATAAGGAGGAATCACAATTACAATCATAATCAACACTACAACCCCAGCAATGCAAGTTATGATGA GTCACCCTATGTAGATAATATGGGTTACTAAATATATGCAAAATATAAAAAAATCAAGTGAACGGTCTCTTTGACTGTAC AATTCTTTGGTATTGTCTACATGATGCTTCTGCTGCGAGACACTCACCCTCACTTTCTACACCACCTGTGTTTTCTGGTT CTTAGATCTTGTTTTATTCTCTCCTGGCATTCATATCCCCTGCCGTTTCAAACATCATTATTTATGACGCTCTTTTGAAG CTCATTTGCTCATCAACTTTAAACATATGCCGGATCTTTTCAGATTTCAGAAATGTCCATCTATGATTTCATAGGTTTAA AGCGTAATAGTGTACTGCCTGCAGTTTAGTTGTATGGTTGATATGAAGTTGATAACAGACATGGATTTAACTTTAACTAT TTAGGCGGCTGACATTTTATGAACTCTTTTGAGATGAATAATGTTTTTTACTCAGTGACTTCCGTATTTTTTCCTAGGTA AATGAGATTGCTTGGAACATGACAGGCGAGATGTTCTTTCTAACTACAGGAAATGGTGAGGTCATTGTTTGACTTTGCAC TTTGTAAATAATTAATATCAACTCAATACATTTTGTTTCAATGACTTTGTTTAAGGTAGAAAAAATATCTTATATTTTAT TTACATGCTCACTTAGGGACTGTGGAAGTACTGACGTACCCATCTCTTCGACCTCTTGAAACCCTCATGGCTCATACAGC CGGTTGTTATTGCATTGCAATTGACCCAACAGGAAGGTATGTTTCTAGTGTTTGTTGTTTCTGGTCTTGCAAATTGCATT TGTATTAGCTAGGTAGGAAACGAATGTGCAATCTCTACTGATGCATTTTTATTTTATGCCTTCTTTCCTCCAATCTTCAT TGTTAATATAAAAAAGTATATATAGAAATAACAGAATAGATATCCTTGTGCTATTGAAACAGATATTTTGCTGTTGGAAG TGCTGATTCCCTTGTCAGCCTGTGGGATATCTCACAGATGCTCTGTGTGCGCACCTTTACAAAGCTGGAGTAGGTTTATC TTGGCTTCCATGTTTGTGTATTCAGCTTTTGATTTTCAGGTATATTGATTGTATTGATTGTATTAAGCTCCTTCTGACCA ATATGGAATGTTATGCTTCTCAGATGGCCTGTCCGTACAATCAGTTTCAATCATACTGGGGAACTTATTGCTTCAGCAAG TGAAGACTTGTTCATTGATATTGTAAGTTATACATATCAATTTTTTATAACAGCAATGTTATATGTTACGGAGGAAAATC TTAAGAAATGCTGATGTGGCAAAGCTTAAATTGTTATTTGACAGAAATCGTGGGGTAGTGATAAGTGATAACTACCACTT ACTTGTTGGGTTTCTTATCGTAACTTTTTAGTGTTTTCCTTTTTCTATTTTTTTTTTTCTATCAGTCTCAGTTATCCATC AAATATAATTTCCATAACGAATGATATTAAAAGCTTGCTACTTTATGCAACAGTCTAATGTTCAAACTGGACGAACAGTG CATCAGATTCCTTGTAGAGCTGCCATGAACAGCGTTGAGTGGAATCCTAAATACAATTTACTTGCATATGCTGGTGATGA CAAAAACAAGTATCAGGCTGATGAAGGTATATGTTTTTAGCGCCTGCAAAGTGTTTATTACAAACATAAGAATCATGCGG CTGCAATTAACTCCTATGCATTTTCGTTGCAGGTGTTTTTCGAATTTTCGGTTTTGAAAATGCTTAGCATTGGCAGACCT GCCATTTTTACCTTAGTTGCTTGCAAACAAGGAAGAAAAGACTCTTGTTGCTTATCTGAATCTCTTACTGGTTGCAAGGA CTGATCCCCTGGAGTTTGATTTGTAATCGGAATTAGATCATTTTTGTATTTAAAGCTTTTTTTCTCTGTTTTTATGGTAA TCGGATGTTTGATTTAAGTGGGAGAGCTAGCTAGCCTTAAGCAGTCTTTGGTATGAGAGACTTGTGTATGGAAAAAAACT CTATTGCCCCACAAGGATGTGGATGTGCTCGAATAGTACTGCCGATGGAGGATACTTGTTTTATATACAAAATGATAACA CTTGCTGCTCAAAAATTGTCTAAAGTGGCTAGATATTTTGCAAGGGAAGAAATATCTTGAAAAGACATATTTTCCTGTCT TCTCATTATGTCTCAGAATCTCAGAATCTTTGCTTTAGAATGTAACTTATTGTAAATTTGAGAAGGGCTTGTGTTTCCCA TTTCAGTTCAAATATTGTCAATTCCAGAAGGATTTGCATGACTCAGTTTCAATTCAATTTCAGCAGGATGTCTCGGTTTC AATTCAAATATTGCTTGCTTAGATTTATTTGGAAAATACCTTTGAGTAAATGACATTTAGTTCATAAGATATTCAATAAT GTGATGAAGAAAAATTGCTCTAAACTTGCTACAACTCTTGCAAGAGAAGAAGAAACCAGCCAAGTTATATTGTTTTGGCG CTTCCTAGATACTTCCATCCAAATTTTGTTTTGTCTCAACAATACACAAAAAGAAATACAAGTGCTAAATATGAATAGTA GCTTTTATTTCATGAGAAATTCCAAAAAATTGTAGCATCAAAATTGCAGCAGCTCTCAGTGTAAACTGCATAACAGACTT CACAAAATTGTGGGCATCAAGAGCACACAAGAGGTGTGTTGCTTCAGAACAGAATTAGGCTCTTGAAGGAATCTCCAGTC CCAATGACATCCTCATCAACTACTCATCAAGTCCCAGCAACACAATCATCAATGAAATCTTCTGAGTTAAGAACTTGAAA ACCTTGTACAGAAAAAACCAAAATGATGATGTCTCTCCTGTCTCCCATATAGTCCTTCCTTGTGTAGAAACCTTGTATAG AAAAAACAAAATGATGATGGTCCTTATGACACCTGCTCCAGCCTCATGACTTGCCAAATTTGAAGTTTTCAGCAAACTCT AAGGCCAATTTTGATAGCAGATCTCTTATTGAGGTTGAGATTCAAAAGGGTTAGTCTAATCTATCGGACCAAAAATGCTT CATTCCTTGGTAGAGGCTGAAAGTGCAAGAGAAAATCACCATTAAGCCAAAACTTACAAACAAATTGCATAAATGCCAAA ACTTACAAACAAATTGCATAAATGAAGAGAAACAAGAAAAGATCTGATCAGAGAAATCATTACCACAATCAGTCCCTCAA CCAATTCCAAATCCATGCTTCACTGAAGAGCCAATCGACCATCATCATAAGCCGCAGAGAACAAACTTGGAAACAGGAAA AGCCAAACCTGTAAAGTAAACAAGACAAAAAGTAAGCAAATTATGAGAACACCAAGTAACTGGCTTCCATTTGATCTCAA CACTTGAGCTCTTCATCCTCTTCCCACTCTGAGGCTCCTTAGAAAGATCAAAACTCGCCCCTTTCATCCTCAACTCCTGA ATACACCTCGTCACCGCCCTTCCATCATTCCTCTCCCTCTGCAACTGCTCCCACACCTTCCAGTACCCATGCACCTTCAC CTGAACCAGAAACACAAACACAAGCGAAGTGCAAAGTGACACCATGGAAGGAATCCACCACTTTTTGCAAACACTGTGGT GTTGGTCTGGGTGGTTCTGTTCACTGGTCCAGGAAGTGAACAAGAGGGTGAAGAAGAAGCCATGGAAGATGAAGAAGAAG GAACAGAGTTGGAAGAGTTCAGCTTTGACAGAGTCCATTCTGGTTTCTTTGCGCGCAATGCGTTTGGCGAAGAGATCCTC TTCTCTCTGCCATAGCTTCAGGAGCAAGAGGTGACCGGGGCTTTCGGAGATTTCGGTTAAAGGGTGGTCATCAATGGCCT CAAACATGTTGGTGGTGGTCATGGAACACAAGTGGTGCTTGTGTTCTTGGTCCACAGGGATTTCAACTATGTGGGTGTCT CTTGTTTCCGCCATTGAATCAAAAGCTAAGAATGAATTGAAATGAAAATGAATAGAACTAAACACAGAAGAATGAATTGC AGTTAACGCAGAGAAGAGAGATTGAGAATTTGTTGTTGTTGCAGAAAGAAGACAGAGAAATGTAAACGTTGTTGAGAGAG AGAGAAACATGTGTGACATAAATACCATTTCAATGCCAAC
CDS sequence (LotjaGi6g1v0136100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGCACTCTGTGGCCTGGAATTGCATTGGGACCAAACTTGCCTCTGGGTCTGTGGATCAAACTGCTCGAATCTGGCA TGTTGAGCAACATGGGCATGGTAAAGTCAAAGATATTGAATTAAAAGGCCACACTGATAGTGTGGATCAGCTATGCTGGG ATCCCAAACATGCCGATCTGATTGCGACTGCATCGGGTGACAAGACCGTTCGTTTGTGGGATGCTCGTAGTGGAAAATGC TCACAACAGGCAGAACTTAGTGGGGAGAATATCAACATTACCTACAAACCTGATGGGACTCATGTAGCTGTGGGCAATAG GGATGATGAATTAACAATACTGGATGTTAGGAAGTTCAAACCAATTCATAAGCGCAAATTCAACTATGAGGTATTAACTA GTTTTAAGTTCAAACCAATTCATAAGCGCAAATTCAACTATGAGGTAAATGAGATTGCTTGGAACATGACAGGCGAGATG TTCTTTCTAACTACAGGAAATGGGACTGTGGAAGTACTGACGTACCCATCTCTTCGACCTCTTGAAACCCTCATGGCTCA TACAGCCGGTTGTTATTGCATTGCAATTGACCCAACAGGAAGATATTTTGCTGTTGGAAGTGCTGATTCCCTTGTCAGCC TGTGGGATATCTCACAGATGCTCTGTGTGCGCACCTTTACAAAGCTGGAATGGCCTGTCCGTACAATCAGTTTCAATCAT ACTGGGGAACTTATTGCTTCAGCAAGTGAAGACTTGTTCATTGATATTTCTAATGTTCAAACTGGACGAACAGTGCATCA GATTCCTTGTAGAGCTGCCATGAACAGCGTTGAGTGGAATCCTAAATACAATTTACTTGCATATGCTGGTGATGACAAAA ACAAGTATCAGGCTGATGAAGGTGTTTTTCGAATTTTCGGTTTTGAAAATGCTTAG
Protein sequence (LotjaGi6g1v0136100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVHSVAWNCIGTKLASGSVDQTARIWHVEQHGHGKVKDIELKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC SQQAELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVLTSFKFKPIHKRKFNYEVNEIAWNMTGEM FFLTTGNGTVEVLTYPSLRPLETLMAHTAGCYCIAIDPTGRYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFNH TGELIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIFGFENA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 29 | 29 | 10.074 | ||
| ProSiteProfiles | 1 | 267 | 267 | 28.871 | ||
| Gene3D | 1 | 141 | 141 | 4.9E-30 | ||
| SMART | 1 | 27 | 27 | 56.0 | ||
| Pfam | 2 | 26 | 25 | 0.052 | ||
| PANTHER | 2 | 310 | 309 | 7.8E-131 | ||
| SUPERFAMILY | 2 | 294 | 293 | 7.33E-56 | ||
| PRINTS | 14 | 28 | 15 | 2.2E-7 | ||
| SMART | 34 | 74 | 41 | 4.9E-8 | ||
| Pfam | 40 | 74 | 35 | 1.1E-4 | ||
| ProSiteProfiles | 41 | 83 | 43 | 15.521 | ||
| ProSitePatterns | 61 | 75 | 15 | - | ||
| PRINTS | 61 | 75 | 15 | 2.2E-7 | ||
| SMART | 136 | 174 | 39 | 100.0 | ||
| Gene3D | 142 | 308 | 167 | 2.8E-29 | ||
| SMART | 177 | 216 | 40 | 7.7E-9 | ||
| Pfam | 180 | 216 | 37 | 7.3E-4 | ||
| ProSiteProfiles | 184 | 225 | 42 | 12.915 | ||
| PRINTS | 203 | 217 | 15 | 2.2E-7 | ||
| SMART | 219 | 258 | 40 | 2.1 | ||
| Pfam | 230 | 280 | 51 | 7.9E-5 | ||
| SMART | 261 | 299 | 39 | 89.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | MRNA export from nucleus | The directed movement of mRNA from the nucleus to the cytoplasm. |
Expression pattern of LotjaGi6g1v0136100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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