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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0136100 |
| Transcript ID | LotjaGi6g1v0136100.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transducin/WD-like repeat-protein; TAIR: AT5G56130.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q9FKT5|THOC3_ARATH THO complex subunit 3; TrEMBL-Plants: tr|V7BL70|V7BL70_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0136100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:39213808..39218795) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGGAACAAACCCCATTTAAGAATCTCCATAGCAGAGAGTATTCTGGTCACAAGAAGAAGGTACCCTTTTGCTTCCT TTCTCTTTCATGGTAAAACGCGTTCAAAGTTCGAAACTTTTTGTGCTTGAATGCTTCAGTTCATGTGAAAAACAAGCCCT TTATCAATGTTTATGTTTCAATTCTGATATGGGTGTTTTTTTTTTTTTGTTTGCTTTCAAATAGGTGCACTCTGTGGCCT GGAATTGCATTGGGACCAAACTTGCCTCTGGGTCTGTGGATCAAACTGCTCGAATCTGGCATGTTGAGCAACATGGGCAT GTAAGTTTACTCCTAATAGCTCTTGGAAGAACAGGAGCTGAGCAAGTTCATATCTTTTTTTCCCCTTTGTTTGATTGTCA TGATTGATTTAAATGGGACTGTTTCATTTCATGGATTAGGAGACAGAAGCTATTTATGTTAGCCTTGGTCTTAGGGTTGT CTTTTAATTTGTTCTTCCTGAATAGGACTTGTGGGCTAATAGAATAATCATGACAAGCTACATAGAGATAGTTCATTTGA TTAGGAAAGCATAGGTTAATTTTCCTTAAGTCTTTCAACTTTTTTTCTTAAGGGTGTGTTTCAGAGTTTTTAGGGGAGGG GAGGGGAAGGCTATGAAGGGACGGGGAGGAGAGGGCAAGAGAGGGGGAATCGGAGTAAGCCCTTCCCTTGTTTGGAAGTT CCAAATTGCCCAAAACCCCCAGATTTGGGGGAACTAATGAATACAACTAAAAGAGGATTTTGGAGGGTTTTCAGAAATAC CCCGAAGTCTTCTCCCCTATTTTAAAATCTCTCAAACAGGGGAAGGGCTTCTCATAAGCCTCCAAAACTCAACTCACAAA CACACCCTAAGAAATGTTGTAGGTTTGCTGTTTGTAAAAGGTTTAAGTTCCCCTCACGTATTGATATCTTGTTTAAGATT TGCCCCTTTGAAATCACCGAGGAAATTTTAAGTAATGTCTTTTATAACTTTTGGTGGTTTAGATAACAACATGACGTCTA TCTAAAAGATTTTATTTGGCCTTGGGTAAAATATGTTCTTTCACATATGATTTTAATACTTCAAACTTTTTGAATGCGAC TTAACCAAGGGTTAATCCTTACTCCTTAGAACCTGTTGGGAAAAGAAGAGTAAAACTTAGGATAATATAGACATGCAGCC AGGGCCCAGGGTAGGAGAAGGGCTAGGGGTCAGTTGAGATCAGTATCTAAGAATCACCACTCTTTGGTTACCTTCCCTGA TACATAATGACAGTAACCAGAGGATGTTTCTATTAGAATTCGGACTTGTTAGATTAAGTCAAGAAATGCATTGCAAATTA TATATGATCAGAAAGAAAATTGTTGTTGAAGCTAGAGTGAACTAGTGTCAATTGTGAATTTTTCGACAGGAACCTTTCCA GTTATGAAACTTTAGGCTACTATAAAGGGATTTTGGGGTGGAGGGGTGTGTTGGGAAGCTGAAGCCCAAAGGCACCTTTT TGCTCAAAGTTTCTCTTTCAGTATTGGCTGCTACTATTATGTTATTGTAGATTGTTTTGTTCTTCTGACGTGGTTAGAAT TTGATTGTTTCATTTTATATGTGGGACGGGGTTGGCTGGGGGTTTATTATAGGGTAAAGTCAAAGATATTGAATTAAAAG GCCACACTGATAGTGTGGATCAGCTATGCTGGGATCCCAAACATGCCGATCTGATTGCGACTGCATCGGGTGACAAGACC GTTCGTTTGTGGGATGCTCGTAGTAAGTGAAAATCCATTTGTTACAATTTAATTATTATTCATATCAGAAGGAAGAAGTT ATGACCTTTTATATTTTGGGAGACTTGTAATGAATTGTACAGTTATATTATCTTAATGCCGGTCACAATTAACCATATGC TCATTGGAATAAGCAAACGATTGGTTTCTTTGTTTGAAAATGTTTTCCACATCTTAGATCAATGCTTTTGTTGATGATTC ATTGAAAAAGAAAGTTAACTGTAAATATTTATTATCGTTTGGAGGTCCAAAGAAGGGGCTTGTGGAAAAGCTACTCATAT TTGATTTCTGCAGGTGGAAAATGCTCACAACAGGCAGAACTTAGTGGGGAGAATATCAACATTACCTACAAACCTGATGG GACTCATGTAGCTGTGGGCAATAGGGTATGTTACACAATTGCTTCATTTGCTTAAAGCTCCGAGTATTGTGACTGTATGT GTTAAGATCAAACTATATTCTCTTGCTGTTTTTCATCATATGAAGTCTTATGCGGTTTTGTTTTCCACAGGATGATGAAT TAACAATACTGGATGTTAGGAAGTTCAAACCAATTCATAAGCGCAAATTCAACTATGAGGTATTAACTAGTTTTAAGTTC AAACCAATTCATAAGCGCAAATTCAACTATGAGGTATTAACTAGTTTACACTTCATTCTTGCTGATTTTTCTGTTTTCGT CAGTTTGTTAAGTCTTATTTTTAGGCTGAGGAATGAACTTATGAGGAACTTGTCTTTACACCACATTCTTATAATGTACA TAAAAATGTGAATTTGCTATACGCTAATTGGTTTTCTTTTTTTACAAACCACACAACTGTTTTCAGAAGTTTGAATTGGA ATTCGCAGTCTGATAAAGGGCTTATTAGTTGGAGTGTAAATTGCATATTGTTTTATAATCAATATAAATTTGTGGTCAAT TGGAAGAACTAAATGTCCTAGTATCAAACCATCAGATAACCATGAATATCATGTTTGTATTCTGTTAGAGAATTCTTGTA TGCCTGTTTGAGCCAACATGTCAAATAGTTATGTTCTGCCTTGGAATGTGTGTTTTCACATTGAAGCATTTTTCCAAACA GGCTAGAATTTGCATGTTTAAGTTTTTTTACTTCCATATTGGTCGAGTATGAACAATTTCAGTTTCCATGCTTTGAAACC TGACGCGTCTGTTAAAAACAGAAAGAAGCCGAAGAGCATTGTTTTTACTTACAATTAATGGTAAATCTGAGAAACATTTC TTGTTTTTTTTATCACAATATTGTACGCAGGACACACATTACAATGATTGAACTGGATCCCTAAACATTAGGGATGAAAA TTTTGAAAAATGGAAAGTATGCTTAATTAACTTTCAATGGTAAGTGTATCACGAATATAAGGAGGAATCACAATTACAAT CATAATCAACACTACAACCCCAGCAATGCAAGTTATGATGAGTCACCCTATGTAGATAATATGGGTTACTAAATATATGC AAAATATAAAAAAATCAAGTGAACGGTCTCTTTGACTGTACAATTCTTTGGTATTGTCTACATGATGCTTCTGCTGCGAG ACACTCACCCTCACTTTCTACACCACCTGTGTTTTCTGGTTCTTAGATCTTGTTTTATTCTCTCCTGGCATTCATATCCC CTGCCGTTTCAAACATCATTATTTATGACGCTCTTTTGAAGCTCATTTGCTCATCAACTTTAAACATATGCCGGATCTTT TCAGATTTCAGAAATGTCCATCTATGATTTCATAGGTTTAAAGCGTAATAGTGTACTGCCTGCAGTTTAGTTGTATGGTT GATATGAAGTTGATAACAGACATGGATTTAACTTTAACTATTTAGGCGGCTGACATTTTATGAACTCTTTTGAGATGAAT AATGTTTTTTACTCAGTGACTTCCGTATTTTTTCCTAGGTAAATGAGATTGCTTGGAACATGACAGGCGAGATGTTCTTT CTAACTACAGGAAATGGTGAGGTCATTGTTTGACTTTGCACTTTGTAAATAATTAATATCAACTCAATACATTTTGTTTC AATGACTTTGTTTAAGGTAGAAAAAATATCTTATATTTTATTTACATGCTCACTTAGGGACTGTGGAAGTACTGACGTAC CCATCTCTTCGACCTCTTGAAACCCTCATGGCTCATACAGCCGGTTGTTATTGCATTGCAATTGACCCAACAGGAAGGTA TGTTTCTAGTGTTTGTTGTTTCTGGTCTTGCAAATTGCATTTGTATTAGCTAGGTAGGAAACGAATGTGCAATCTCTACT GATGCATTTTTATTTTATGCCTTCTTTCCTCCAATCTTCATTGTTAATATAAAAAAGTATATATAGAAATAACAGAATAG ATATCCTTGTGCTATTGAAACAGATATTTTGCTGTTGGAAGTGCTGATTCCCTTGTCAGCCTGTGGGATATCTCACAGAT GCTCTGTGTGCGCACCTTTACAAAGCTGGAGTAGGTTTATCTTGGCTTCCATGTTTGTGTATTCAGCTTTTGATTTTCAG GTATATTGATTGTATTGATTGTATTAAGCTCCTTCTGACCAATATGGAATGTTATGCTTCTCAGATGGCCTGTCCGTACA ATCAGTTTCAATCATACTGGGGAACTTATTGCTTCAGCAAGTGAAGACTTGTTCATTGATATTGTAAGTTATACATATCA ATTTTTTATAACAGCAATGTTATATGTTACGGAGGAAAATCTTAAGAAATGCTGATGTGGCAAAGCTTAAATTGTTATTT GACAGAAATCGTGGGGTAGTGATAAGTGATAACTACCACTTACTTGTTGGGTTTCTTATCGTAACTTTTTAGTGTTTTCC TTTTTCTATTTTTTTTTTTCTATCAGTCTCAGTTATCCATCAAATATAATTTCCATAACGAATGATATTAAAAGCTTGCT ACTTTATGCAACAGTCTAATGTTCAAACTGGACGAACAGTGCATCAGATTCCTTGTAGAGCTGCCATGAACAGCGTTGAG TGGAATCCTAAATACAATTTACTTGCATATGCTGGTGATGACAAAAACAAGTATCAGGCTGATGAAGGTATATGTTTTTA GCGCCTGCAAAGTGTTTATTACAAACATAAGAATCATGCGGCTGCAATTAACTCCTATGCATTTTCGTTGCAGGTGTTTT TCGAATTTTCGGTTTTGAAAATGCTTAG
CDS sequence (LotjaGi6g1v0136100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAACAAACCCCATTTAAGAATCTCCATAGCAGAGAGTATTCTGGTCACAAGAAGAAGGTGCACTCTGTGGCCTG GAATTGCATTGGGACCAAACTTGCCTCTGGGTCTGTGGATCAAACTGCTCGAATCTGGCATGTTGAGCAACATGGGCATG GTAAAGTCAAAGATATTGAATTAAAAGGCCACACTGATAGTGTGGATCAGCTATGCTGGGATCCCAAACATGCCGATCTG ATTGCGACTGCATCGGGTGACAAGACCGTTCGTTTGTGGGATGCTCGTGGAAAATGCTCACAACAGGCAGAACTTAGTGG GGAGAATATCAACATTACCTACAAACCTGATGGGACTCATGTAGCTGTGGGCAATAGGGATGATGAATTAACAATACTGG ATGTTAGGAAGTTCAAACCAATTCATAAGCGCAAATTCAACTATGAGGTAAATGAGATTGCTTGGAACATGACAGGCGAG ATGTTCTTTCTAACTACAGGAAATGGGACTGTGGAAGTACTGACGTACCCATCTCTTCGACCTCTTGAAACCCTCATGGC TCATACAGCCGGTTGTTATTGCATTGCAATTGACCCAACAGGAAGATATTTTGCTGTTGGAAGTGCTGATTCCCTTGTCA GCCTGTGGGATATCTCACAGATGCTCTGTGTGCGCACCTTTACAAAGCTGGAATGGCCTGTCCGTACAATCAGTTTCAAT CATACTGGGGAACTTATTGCTTCAGCAAGTGAAGACTTGTTCATTGATATTTCTAATGTTCAAACTGGACGAACAGTGCA TCAGATTCCTTGTAGAGCTGCCATGAACAGCGTTGAGTGGAATCCTAAATACAATTTACTTGCATATGCTGGTGATGACA AAAACAAGTATCAGGCTGATGAAGGTGTTTTTCGAATTTTCGGTTTTGAAAATGCTTAG
Protein sequence (LotjaGi6g1v0136100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEQTPFKNLHSREYSGHKKKVHSVAWNCIGTKLASGSVDQTARIWHVEQHGHGKVKDIELKGHTDSVDQLCWDPKHADL IATASGDKTVRLWDARGKCSQQAELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMTGE MFFLTTGNGTVEVLTYPSLRPLETLMAHTAGCYCIAIDPTGRYFAVGSADSLVSLWDISQMLCVRTFTKLEWPVRTISFN HTGELIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQADEGVFRIFGFENA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 311 | 309 | 5.3E-136 | ||
| Gene3D | 3 | 172 | 170 | 8.6E-34 | ||
| SMART | 8 | 47 | 40 | 8.6E-7 | ||
| SUPERFAMILY | 9 | 294 | 286 | 1.99E-58 | ||
| CDD | 11 | 294 | 284 | 8.85809E-42 | – | |
| Pfam | 12 | 46 | 35 | 5.2E-6 | ||
| ProSiteProfiles | 15 | 49 | 35 | 12.781 | ||
| ProSiteProfiles | 15 | 268 | 254 | 28.423 | ||
| PRINTS | 34 | 48 | 15 | 2.2E-7 | ||
| SMART | 54 | 94 | 41 | 4.9E-8 | ||
| Pfam | 60 | 94 | 35 | 1.1E-4 | ||
| ProSiteProfiles | 61 | 94 | 34 | 14.084 | ||
| PRINTS | 81 | 95 | 15 | 2.2E-7 | ||
| ProSitePatterns | 81 | 95 | 15 | - | ||
| SMART | 137 | 175 | 39 | 100.0 | ||
| Gene3D | 173 | 303 | 131 | 8.8E-25 | ||
| SMART | 178 | 217 | 40 | 7.7E-9 | ||
| Pfam | 181 | 217 | 37 | 7.4E-4 | ||
| ProSiteProfiles | 185 | 226 | 42 | 12.915 | ||
| PRINTS | 204 | 218 | 15 | 2.2E-7 | ||
| SMART | 220 | 259 | 40 | 2.1 | ||
| Pfam | 231 | 281 | 51 | 7.9E-5 | ||
| SMART | 262 | 300 | 39 | 89.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | MRNA export from nucleus | The directed movement of mRNA from the nucleus to the cytoplasm. |
Expression pattern of LotjaGi6g1v0136100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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