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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0140600 |
| Transcript ID | LotjaGi6g1v0140600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT5G55970.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680; TrEMBL-Plants: tr|I1N083|I1N083_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0140600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:40765806..40768498) extracted from Lotus japonicus Gifu genome v1.2.
AACATGGGCAGTGTCCAATTAAACAGGCCTTCCTCACCTTCAATTATGACAAGGGTGGCCATGAGAGCCTCTAGATCAAG ATGGTTCACCTTCTTGAGAAGAGTTTTCCATTACCAGAATGGACCAAGGTCTGATCTTGGCTCCAACCCTTTCAATTCCA GCACTTGGATGATGCTGGAATTGATTGCTCTGATGGTGCAGATAACCAGCACAACTTTCACCTTAGCAATTTCAAAGAGT GAGAAGCCTATTTGGCCAATGAGGATTTGGATAGCAGGTTATGACATAGGTTGTGTACTTAATTTGTTGCTTCTTTGTGG CCGCTACCATCAGCTTCATGTGACTCATGATGGCCTTTCTGATATGGAGCAGCAGAGTAACAATGAAGAAACCAGGTACC TATATATGCTTATTCACTTCAAGAACTCCCTTTTAGTCATTTTATCATATATTTGGAGTGCTAATAAATAAGTTAGAATT TATAAGGTGCTCATTGTGCTGAAATCTTTGACCTAGTAGAAAGTATAGACACCATTGAGTTTTTGGCAGAATACAACTTT GAGATAGAATCTTCAAAATTCAATAATTATCTTCTTGAACTTGAATTGATTACTATAGTATTTCAAATTTTCAACAAAGA GACAAGGGAATGTTGTAGAGAAAATTGTGCTGTAACTGTATGTGGGCCTAGGTGCCCCCACATGGCCTACATGGGAAAGG GAGAGTAGGATAAAACATGAGAAGGTGGAGGAACCAAATTGCATGATTCTTTTGTTTTTTCTTTCATTTTATTAAAAAGA ATGTTTTATCTTTCCTTTAAAAATGGGTAATTTTCAATTAAAAAGAAAAATGAAGCAGGAAAATCATTTATATTAAAGAA TCATGATTACATGATTCAGGTTTTGAGGGAAAAGATAGTAAGAAAAAGAAGAGTGATGCTTTCTCACTAAAACAAAGGAT AAATTTTTACTTGTTAGTCTATTAGTATCATTTTTAAGGCCAGCTCAACCCCAAATAAAATTTGATTGATTTGGGACAGT GTTTTTTCCTAATTGGGCTTACCCATGTCTGCTTTTATAGGGTGACTAATGAAATACTACTCCATTTGTTTGATTGAAAT GAGTTGCTCCAAATCAATTAATGATGTTTTGTTCAATTCATACATACTTGAATTTTCTTACGTAAGGTCACAACTTCGAG TATGTGTATGAAAATAACCTCAATGGGAGAATTAGCCACACAAAAATGTGATTGTTTCTCTTGCTCTCTGAAGAGGATAT ACTAAGAAGTTTCTCCAATAGACAAATTCTGAAAATTTAAACTAACAACGAAAAGAATCATTACTAAAAAGTTCAATAAA GAATTGTCATATTTAATCATAATTCAAAGTAAATTGTTGAACAAATTAAACAGCTAAAAATCACTAATCCATTCAACCTT TTTGTTGCAATTCAATTTTAAGAAAGTACTAATATAATTAATTTCCTTTGTACCACAGTGTATACAGGAGCTCACCTTTG ATGATGAAATGCAGAAGCTCACTGGAACTTTTCTTTGCCATATGGTTTGTAATGGGAAATGTTTGGGCATTTGACTCACG TTTTGGATCATTCCAACAAGCTCCAAAGCTCCAAATCCTCTGCATCATCCTTCTTGCTTGGAATGCAATCTGCTACTCTT TCCCTTTTCTGCTGTTTCTTCTCCTCTGCTGTTGCGTGCCACTAGTTAGCACCCTCCTCGGATACAACATGAACATGGGT TCCTCTGCTAGAGGTGCCTCTGAGGATCAAATCTCACAACTTGCCAGCTGGAAATTTAAAGCTGCTCATGCCAACTTAGA CCTCAGCAATGATGACCCTCAAAGCAGTGAAAGATTGATCAATGAAGATCCTGTAAGTGATAACTATTATTAACAGAATC ACTAATGTTTTGATTACATATGCTGCTATATATGCATACACTTCCAATATTATTTCACCACTTGTGAAATCTAATTAGAT GTCTTTACAACAATGTGCATTGTTAGAATTTAGATTATCTGCGGGTCTGGTAAATCTTAAATTGCACAGTTAAAGGAATT TGTGTCGTTTCATTTCAAACGGCTCAAATTTTGAGCTTATATATGTCATCCATCCGATCTTTATAAAACATGTAGTTATT CGATCTTGATCAAACGACTCAATTCTCTGACAGTGTGAATTTAGGATGGGTCTGATTGCATAAATCTGAATCCGCATATT TATTGATATGTATTTTTTATACATAAGGAATTTTACCCCGTTTAATTGAAAGTTCGTGAATTAGATTAGGTTTGTGTTAA TGTGAACCAGCTTTCACCCCATGGAAGCCAGCAGTGTTTAGGAATGTGTGCTTTTGTGATGGAATATGTGCTAATGTGAT TCAAACGGAAAAAAAACAAACATGTCCTAATTAATTTCACATTTTATACAAAGTTATTATGTCTGATTTCATGGTTTATA ACTTTATATTATATATTCTGTACATAATTTTATATTGAACTGATAAGTTTGTGGGTGTGGTGACAGGAGTGTTGCATTTG CTTAGCCAAGTACAAAGACAAGGAAGAAGTTAGGCAACTGCCCTGTTCCCATTTGTTCCACCAAAAATGTGTGGATCAAT GGCTAAAGATTATATCATGCTGTCCTCTTTGTAAACAAGGATTACAAAGATAG
CDS sequence (LotjaGi6g1v0140600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCAGTGTCCAATTAAACAGGCCTTCCTCACCTTCAATTATGACAAGGGTGGCCATGAGAGCCTCTAGATCAAGATG GTTCACCTTCTTGAGAAGAGTTTTCCATTACCAGAATGGACCAAGGTCTGATCTTGGCTCCAACCCTTTCAATTCCAGCA CTTGGATGATGCTGGAATTGATTGCTCTGATGGTGCAGATAACCAGCACAACTTTCACCTTAGCAATTTCAAAGAGTGAG AAGCCTATTTGGCCAATGAGGATTTGGATAGCAGGTTATGACATAGGTTGTGTACTTAATTTGTTGCTTCTTTGTGGCCG CTACCATCAGCTTCATGTGACTCATGATGGCCTTTCTGATATGGAGCAGCAGAGTAACAATGAAGAAACCAGTGTATACA GGAGCTCACCTTTGATGATGAAATGCAGAAGCTCACTGGAACTTTTCTTTGCCATATGGTTTGTAATGGGAAATGTTTGG GCATTTGACTCACGTTTTGGATCATTCCAACAAGCTCCAAAGCTCCAAATCCTCTGCATCATCCTTCTTGCTTGGAATGC AATCTGCTACTCTTTCCCTTTTCTGCTGTTTCTTCTCCTCTGCTGTTGCGTGCCACTAGTTAGCACCCTCCTCGGATACA ACATGAACATGGGTTCCTCTGCTAGAGGTGCCTCTGAGGATCAAATCTCACAACTTGCCAGCTGGAAATTTAAAGCTGAG TGTTGCATTTGCTTAGCCAAGTACAAAGACAAGGAAGAAGTTAGGCAACTGCCCTGTTCCCATTTGTTCCACCAAAAATG TGTGGATCAATGGCTAAAGATTATATCATGCTGTCCTCTTTGTAAACAAGGATTACAAAGATAG
Protein sequence (LotjaGi6g1v0140600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSVQLNRPSSPSIMTRVAMRASRSRWFTFLRRVFHYQNGPRSDLGSNPFNSSTWMMLELIALMVQITSTTFTLAISKSE KPIWPMRIWIAGYDIGCVLNLLLLCGRYHQLHVTHDGLSDMEQQSNNEETSVYRSSPLMMKCRSSLELFFAIWFVMGNVW AFDSRFGSFQQAPKLQILCIILLAWNAICYSFPFLLFLLLCCCVPLVSTLLGYNMNMGSSARGASEDQISQLASWKFKAE CCICLAKYKDKEEVRQLPCSHLFHQKCVDQWLKIISCCPLCKQGLQR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 54 | 54 | - | – | |
| PANTHER | 8 | 287 | 280 | 2.9E-145 | – | |
| PANTHER | 8 | 287 | 280 | 2.9E-145 | – | |
| TMHMM | 54 | 76 | 23 | - | – | |
| Phobius | 55 | 76 | 22 | - | – | |
| Phobius | 77 | 87 | 11 | - | – | |
| Phobius | 88 | 109 | 22 | - | – | |
| TMHMM | 89 | 111 | 23 | - | – | |
| Phobius | 110 | 144 | 35 | - | – | |
| Phobius | 145 | 163 | 19 | - | – | |
| TMHMM | 145 | 162 | 18 | - | – | |
| Phobius | 164 | 174 | 11 | - | – | |
| Phobius | 175 | 200 | 26 | - | – | |
| TMHMM | 175 | 197 | 23 | - | – | |
| Phobius | 201 | 287 | 87 | - | – | |
| Gene3D | 213 | 286 | 74 | 1.6E-17 | ||
| SUPERFAMILY | 240 | 285 | 46 | 3.28E-16 | – | |
| CDD | 240 | 282 | 43 | 1.42559E-19 | – | |
| Pfam | 240 | 282 | 43 | 8.4E-12 | ||
| SMART | 241 | 281 | 41 | 7.0E-6 | ||
| ProSiteProfiles | 241 | 282 | 42 | 12.297 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0140600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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