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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0144600 |
| Transcript ID | LotjaGi6g1v0144600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Agenet domain-containing protein / bromo-adjacent domain-containing protein, putative; TAIR: AT5G55600.1 Agenet and bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|Q9FZD9|DUF3_ARATH DUF724 domain-containing protein 3; TrEMBL-Plants: tr|A0A0B2NVF2|A0A0B2NVF2_GLYSO Uncharacterized protein; Found in the gene: LotjaGi6g1v0144600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:41563911..41569145) extracted from Lotus japonicus Gifu genome v1.2.
TCCTCCAAGACGGCCACGACACCGATCATGTTATTTTAACTGTAACTAAAGAATCCGAACTTTTAACTCTCGGACTAGTC CAGAACATCAACCTCTGGACTGGTATGGAGGTTTAAGTCCCGGAGGGTAGTCCCGACATTTTTTTAAAAAGGCTAGGGTG GCAATTCTAAAACAGGGGGTGGGAAATCTAATTCCCCAGCAACCAGGTCCCCACTTCTTTGTAACACCTCCAGCTACATT GGATTCACAAATCCTCCTCTCTGCAACTCTCTCTCTTGCCCTTGTCATGTCCATGGCAATTTCAACCCACCCTCTTTCTT CTCTGACCTCACTCCCTCTTCTCCTCCACTCGCTTTCTTCCTCTTCGGTGCTCTCACAGAACCATCCTCAGCCCAATCTC GAATCTTCCAGGATCAACAACATCAAGTTTACTCCGATTTTGCTGTGAAGTTTCAATCTTTTTGTTGGAAACTTTGTTTT CCCTCTCTCAATTAGGATACCCACTTCGCCTTTTGGCTGATTTTCACATCTGGAGCTACCAAAAACCCAATAGTTTTGTA CCTGTTGGGGTTTTCAGCATCTGGATCACTTTTCCTGAAGGGTTTGTTTCTGATCTGTTTGTAGATAAAACATTGATTAG AGTTTTCTGTGGCTCTGGTCAACTTTGGAGGATTTTCGATTTCAGCTGAGGATCATGTCCCTTCTGAGGCTTGTGAGATT GAAATTAGATGCTGTTTTTCTCTGATTGTTTTAGAGGATTTTTCTTCTTATTGTTAGATATATCTGGTTAGTTAGAGTTT CTATTTGGATCCAGAATCCAGATGAACAAGTACTGTGTTTCTGAGGAATCTGGTTAGTTTTGTGGAGTTAACATATTTGT GTTTTTCCTGGTAGCTCTTTTTAGGAGTGAGGAAACTGAGGTTGTTCAGAGGGATATTTGTTTGTTATGATGATAGTATG CTAGAAGATTCTTACCTAATGACTGTGGATTTGACCATTTGCCATTCTTGAAATCAACTTCATCTGGTGTTCTGTTAACT CTTGTTGGTATTCTCCTCAAGATGACTGTAAACGATCGCTGTTTCGTGGAATGGAAAGAGCAGTTCGTTTCGCAGGAGCG TGGCAATCGTGTGGTTCACTATTACCTGAAGGATTCTGGTGGGGAATCCGTCCTTGCAGTTGTGGGCACTGAGAGGAGTG TTAGACACATGTGCTATGTTGCTGCTGAGGAGTTCCTTGAAATTTGTGGGAAGGAGGGTTGCGTTCCAGCTGGTTTCAAA TGGAGATCTAGAAGAGAGGTGGTGGATTGGCTGACATCAATGCTATCAAAGCAGCTTGTGCAGGGAGAAAGAAGTGGTAA GTTGATACTTCTTACTTCTAATATTGCCAGGCGCTTTCATTTATTCTATTTTGGTTATTGTAGGTTGAACCATAATTTGC AAAATAGTATAAGGATGCTATGGCTTTACAAGCATCAAATATTTTGGATAATGAACGATGATATGTGTTTTTTATGTAAG ACAATCATATGGATGTGGTTCAATAAATATTTTGTGGAATTTTCTGTAAAGGAAGTGCATAATAATGTACAAGCAAATGG ATTTTTGGCAAACTTTTATTGTCTTCAATATCTCCGTCATTATCATATTTTTTGTGTGGTTAAAAGTCTGTTATGCATGA AGTTTGGATCGGAGAGCTCTTTTGCACTGACAATTTTCTTTGATATTGTCTTTATTCTTTCTAATTCCTGTTCTATAGGG GGATATTTAGTCCGTCTCTCTACTAGGAATTTTCTTCATTCTAGTCAAATACTTCTTTAATGACTCCTTAAAACCCAGCA TATGTTCTCAAGCAGAAAAAATAATAGTGGAAGTTCATCTAAGATCTCATTAAACATTCTGTCCCCTTTTCCTTTTGAAT TTCAAATCACAGGATCGCCTGGTCATAATTTGGCTCTACCTCATGAAACCTCAAATGGCTGTGAAAATGATGGTACTGCT CTGTCTGCTCAAATAGCAGATCACAAGGTAAATCCCTTTGTTTCTTTTCCCTTTTTCTTACTTTCTCTATTTCCCTTTAT CGTGTTTCTACTAAATGTTCTTAACATGCACATACTTGTCTTTCTCAGGACATTCTATTGAGTAACTGCAAATTGTCCAC TTCAGACATTGTTTGGTCAGGAGTTGCGTGGACATGTGGAAAACAACTGAAGCATTATCCTGCCTTTTGCAGGAATGGCA TCAAAATAGCGGTGCGGAGCCCTTGAACTAATATGCATCCTTAACAAAAAAAAATTTGACCTGCTCAAAAGAAGTTTCAT TTTTTACATGAGCAAAATATTGATTTGACATTTTCAATGTTTCTGATGTCCAGATTCAATCCTTTGTTTTTGTAATGGGA AAGGAAGAGAAACATTTTGTGGCTTATTTAGAGGATATGTATGAAGACAGGAGGGGGCAGAAAAAGGTTAAAGTCAGGTG GTTTCACCACAATCAGGAAGTCAAGGGTGCAATTCCTGTCCGGAATCCTCACCCTCGGGAAGTTTTTATCACGTCTTATT CTCAAGTCATCAGTGCAGAGTGTGTTGATGGTCTTGCCACAGTCTTAACTCGTGAACACTATGAAAGATGCATGCCCTAT TTTTCTCCCACTTCAACAGACAGAATACATTTGTGCTTTAGACAATTTAAAGGCAACAAAGTTAAGCCCTTTGACCTGAG TAAACTGCGTGGCTATTATGCTCAATCAGTTCTTTCTTGCTTGCACCTTGATTCTAACCAGAAGCCAGAGAAGAGCAACA ACCTTGCAAGAGAAGATGAGGATTTGGGCGTAGGTGATGATGCAAAGTTGGGAGCCAAGAGGAGCAGAAGTGATAGGGGG TCTCCTCAGTCTCGGATTGGTCGGCGGGGAGTTAGGAAGTTAATTAGAAGTGAGCAAATGATGGTACACGAGATGTTCCA GGTTGTAAATTATGGTAGCCCAGATCAGAGATTGCTTTCTCTGAAACAGATTGAATTCCAACCTTGGAATAACCCCACAT ACAAGGTTGATGACAAGATAGAGTTGCTCTGTCAGGATAGTGGCATCAGAGGTTGCTGGTTCAGGTGCACAGTTGTGCAG GTAGCCCGGAAACAGTTGAAAGTTCAATATGATGATGTTCAGGATGAAGATGGAAGTGAAAATCTTCAGGTATAATTAAT CTCTTGAGGTCTTCTAACTTCATTTTTTTATATTAGTACTTGGTGCTATGTTTAAATATGTACATAATTAGTGGGTGTTT CTGTTATGGTTTTGTCATGACCACAAGTTATTTGAAGTGATAAAATGTTAATTATTTCTTGTATTTTGAGTTTAAAGAAA ATTTCATAAGGTGATGGAATAATGGGTTTCTGTAAATTAGATGCCATCTAGTTTAGGCTTAATATGGAATATAGACATGC TGGACTAATCATGGATCTAATACTCAACTCAAATAAATTATTCTCAGTTTTAAGGATCTACTGCTTAAAATTTCTCTTTT CTTCAAAACTAAATGGACTCTCATCAGAGTAACTGTTCTGGAGTTAATTTTGAAACAATTTGCTTGATCTCTTCTCCTAA GTAATGCTCTCTACGAATACAGGAGGTTATTTAGATGCACATTTTACATGGAAATTTGATTTTTCTTAGCTCAGTGCAAG AAATTCATTTTTTTTTTTAATTTTAAGACTAGAGAGTAATGGGATGACCAATGATAGTGAGAATGTGGACAGGGACAGAC CGAAGTACAATGAAAATGGGGCAATTGCCCCCCCCCCCTTCTCCCCAAAAGAGAAAAAAATTCTTCATTAGTCAAAAAAT ACCTACTCGAAGTAGCCATTGTTGATTTTACGTTATGTGTTAAACTTTCACCCCCTGGAATGCAAAGTCAAAAAATATGA TATGGTTTATGGATGCCAAACAATTTATGTGGGAAAATAAAGTTATGGCACCTAAGATAAAACAAAATATTCCGAAGAAT AGATTTTATAGATTCCCTTAATGAATTTATACTATTTACACCCCACTCACTCTTGAATTAAAAACTTCTATCTTGATCCT CTCAATCTTTTAGGAGTGGATCCCTGCTTTCAAGTTGGCCAAGCCTGATAAACTTGGGATGAGACATTCTGACCGGCCCA CCATCAGGCCAGCTCCAACTCATGAGGAACAAGAACTGGCTGTCGAGGTCGGAGCTGCAGTTGATGCATGGTGGAGTGAT GGCTGGTGGGAGGGGGTTGTAATTAGAATTGACGACTCTAGTGGTGATAGTGTTCAAGTCTACTTTTCAGGTATGCTGTT TTAATGTTATTTTCTAGCTTCTATAAATTATTCACACTTCACCATTTTGTGATACAAGTAATTTTGGTGGTACCAGGTGA ATGCTTGCTTATGAAAATGCACAAGAAGGACTTGCGAATATCTAGAGATTGGTTAGGAGACAAGTGGATTGATATTAAGG CAAAGCCTGATATAACCTCAACTATATTTACAGCTGATAGTTTTAACTCAAAGCATCCCTTGTCACAGTCTATGGTTAAG GATGGGGACTCTGTTGGTGTCGCTAATTCATGTCAAGACGTTCTTTCTAGTAAGAAGTCTAACGAACCTGATATTGCTGA AGAGAAACTTGTGTGTTGTGATGGCTTTGCTGAAGATGGGGATTGTGTCGGTGATAATAATAGAGAAAAAAATGCACAAG TTGATAATGTTGAGACGCGTAGCAGTTGTGATAATGAAGATAATGGTGATGATAATGGCAAGGGTGTCAATGATGATGGT CGTAGTAATGAGAACATTAGTGATGATAATAAGGATATGGAGGTGAGTGGTACTTCTGAACCAACTGTAGAACATCATGC ATAAACATATGATATGATGGTGCTGGTTGTAGAGTTTTGCCATCATCTCTTTGCTTTGTTGTGATCTTTGTCTGATGTTT AGTGTGATAGAATGTAAATAGTAGTTACACAGGAATGTTGGGAAGCTGATTGATTTTTTAACTTTAGTCTCCTTCATAGA TGTACAGTGTTAAGTGTAATGTCCAAGGTTGTGTTATCATCCTTTCCATTGGTTGTATTAGGAAGATTTCTTTATATTAC TATTGAGTAATATTGAGTAATTCCACTCGTTATATGACTAGTATCATTTATGAGCAAGCATATTTAAAGTTCATAAAAGC ACTATTTTTTTCTGGTTTGTGTAACTCACAGGGTA
CDS sequence (LotjaGi6g1v0144600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTGTAAACGATCGCTGTTTCGTGGAATGGAAAGAGCAGTTCGTTTCGCAGGAGCGTGGCAATCGTGTGGTTCACTA TTACCTGAAGGATTCTGGTGGGGAATCCGTCCTTGCAGTTGTGGGCACTGAGAGGAGTGTTAGACACATGTGCTATGTTG CTGCTGAGGAGTTCCTTGAAATTTGTGGGAAGGAGGGTTGCGTTCCAGCTGGTTTCAAATGGAGATCTAGAAGAGAGGTG GTGGATTGGCTGACATCAATGCTATCAAAGCAGCTTGTGCAGGGAGAAAGAAGTGGATCGCCTGGTCATAATTTGGCTCT ACCTCATGAAACCTCAAATGGCTGTGAAAATGATGGTACTGCTCTGTCTGCTCAAATAGCAGATCACAAGGACATTCTAT TGAGTAACTGCAAATTGTCCACTTCAGACATTGTTTGGTCAGGAGTTGCGTGGACATGTGGAAAACAACTGAAGCATTAT CCTGCCTTTTGCAGGAATGGCATCAAAATAGCGATTCAATCCTTTGTTTTTGTAATGGGAAAGGAAGAGAAACATTTTGT GGCTTATTTAGAGGATATGTATGAAGACAGGAGGGGGCAGAAAAAGGTTAAAGTCAGGTGGTTTCACCACAATCAGGAAG TCAAGGGTGCAATTCCTGTCCGGAATCCTCACCCTCGGGAAGTTTTTATCACGTCTTATTCTCAAGTCATCAGTGCAGAG TGTGTTGATGGTCTTGCCACAGTCTTAACTCGTGAACACTATGAAAGATGCATGCCCTATTTTTCTCCCACTTCAACAGA CAGAATACATTTGTGCTTTAGACAATTTAAAGGCAACAAAGTTAAGCCCTTTGACCTGAGTAAACTGCGTGGCTATTATG CTCAATCAGTTCTTTCTTGCTTGCACCTTGATTCTAACCAGAAGCCAGAGAAGAGCAACAACCTTGCAAGAGAAGATGAG GATTTGGGCGTAGGTGATGATGCAAAGTTGGGAGCCAAGAGGAGCAGAAGTGATAGGGGGTCTCCTCAGTCTCGGATTGG TCGGCGGGGAGTTAGGAAGTTAATTAGAAGTGAGCAAATGATGGTACACGAGATGTTCCAGGTTGTAAATTATGGTAGCC CAGATCAGAGATTGCTTTCTCTGAAACAGATTGAATTCCAACCTTGGAATAACCCCACATACAAGGTTGATGACAAGATA GAGTTGCTCTGTCAGGATAGTGGCATCAGAGGTTGCTGGTTCAGGTGCACAGTTGTGCAGGTAGCCCGGAAACAGTTGAA AGTTCAATATGATGATGTTCAGGATGAAGATGGAAGTGAAAATCTTCAGGAGTGGATCCCTGCTTTCAAGTTGGCCAAGC CTGATAAACTTGGGATGAGACATTCTGACCGGCCCACCATCAGGCCAGCTCCAACTCATGAGGAACAAGAACTGGCTGTC GAGGTCGGAGCTGCAGTTGATGCATGGTGGAGTGATGGCTGGTGGGAGGGGGTTGTAATTAGAATTGACGACTCTAGTGG TGATAGTGTTCAAGTCTACTTTTCAGGTGAATGCTTGCTTATGAAAATGCACAAGAAGGACTTGCGAATATCTAGAGATT GGTTAGGAGACAAGTGGATTGATATTAAGGCAAAGCCTGATATAACCTCAACTATATTTACAGCTGATAGTTTTAACTCA AAGCATCCCTTGTCACAGTCTATGGTTAAGGATGGGGACTCTGTTGGTGTCGCTAATTCATGTCAAGACGTTCTTTCTAG TAAGAAGTCTAACGAACCTGATATTGCTGAAGAGAAACTTGTGTGTTGTGATGGCTTTGCTGAAGATGGGGATTGTGTCG GTGATAATAATAGAGAAAAAAATGCACAAGTTGATAATGTTGAGACGCGTAGCAGTTGTGATAATGAAGATAATGGTGAT GATAATGGCAAGGGTGTCAATGATGATGGTCGTAGTAATGAGAACATTAGTGATGATAATAAGGATATGGAGGTGAGTGG TACTTCTGAACCAACTGTAGAACATCATGCATAA
Protein sequence (LotjaGi6g1v0144600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTVNDRCFVEWKEQFVSQERGNRVVHYYLKDSGGESVLAVVGTERSVRHMCYVAAEEFLEICGKEGCVPAGFKWRSRREV VDWLTSMLSKQLVQGERSGSPGHNLALPHETSNGCENDGTALSAQIADHKDILLSNCKLSTSDIVWSGVAWTCGKQLKHY PAFCRNGIKIAIQSFVFVMGKEEKHFVAYLEDMYEDRRGQKKVKVRWFHHNQEVKGAIPVRNPHPREVFITSYSQVISAE CVDGLATVLTREHYERCMPYFSPTSTDRIHLCFRQFKGNKVKPFDLSKLRGYYAQSVLSCLHLDSNQKPEKSNNLAREDE DLGVGDDAKLGAKRSRSDRGSPQSRIGRRGVRKLIRSEQMMVHEMFQVVNYGSPDQRLLSLKQIEFQPWNNPTYKVDDKI ELLCQDSGIRGCWFRCTVVQVARKQLKVQYDDVQDEDGSENLQEWIPAFKLAKPDKLGMRHSDRPTIRPAPTHEEQELAV EVGAAVDAWWSDGWWEGVVIRIDDSSGDSVQVYFSGECLLMKMHKKDLRISRDWLGDKWIDIKAKPDITSTIFTADSFNS KHPLSQSMVKDGDSVGVANSCQDVLSSKKSNEPDIAEEKLVCCDGFAEDGDCVGDNNREKNAQVDNVETRSSCDNEDNGD DNGKGVNDDGRSNENISDDNKDMEVSGTSEPTVEHHA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 671 | 669 | 3.0E-287 | – | |
| PANTHER | 3 | 671 | 669 | 3.0E-287 | – | |
| Gene3D | 140 | 286 | 147 | 6.9E-26 | ||
| SMART | 168 | 287 | 120 | 1.5E-6 | ||
| ProSiteProfiles | 168 | 287 | 120 | 14.634 | ||
| Pfam | 170 | 273 | 104 | 3.2E-8 | ||
| MobiDBLite | 325 | 348 | 24 | - | – | |
| SMART | 392 | 457 | 66 | 1.1 | ||
| Pfam | 397 | 471 | 75 | 1.4E-18 | ||
| SMART | 478 | 536 | 59 | 3.1E-11 | ||
| MobiDBLite | 623 | 677 | 55 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Chromatin binding | Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase. |
Expression pattern of LotjaGi6g1v0144600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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