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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0149000 |
| Transcript ID | LotjaGi6g1v0149000.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding domain CCCH-type zinc finger protein; TAIR: AT2G05160.1 CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein; Swiss-Prot: sp|Q9SJ41|C3H18_ARATH Zinc finger CCCH domain-containing protein 18; TrEMBL-Plants: tr|A0A0B2NQX3|A0A0B2NQX3_GLYSO Zinc finger CCCH domain-containing protein 18; Found in the gene: LotjaGi6g1v0149000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:42444767..42449395) extracted from Lotus japonicus Gifu genome v1.2.
GTTCAAGGAGCAGTTATGGTCCTCTAAGATGAAGCAGAATATTTTGCCTCAAATCTGTGATTATTTAACAGCTGTGTGTG ATTTTGAAGAGGGATTTAAGGAAACCAAATATAATGAGACAGCACAGCAGAGTGAAAGAGTCAAAATAAACTGAGTGTGT CAGTGCTTAGTGTGCGTTTGTTGGTTACTGCCTTTTAACTGCACTAAGAGAGCAAGAGAGAGAGAGAGAGACAGAAAATT TGCTTATCTCTGCATTCTGAGCTTTTTCAGAAGCATTCCTCTATTTGCCTCTTTGGTTGTTAATTTATGATGATATGGCT CTTTGAATGGAAAACAAAGTTCTGGGTTTTGTAAAAGAGAGAAAGTGGAATGAGCAGGTGTTGAAAAGATTTGTGCTTGA AGCACTTGCATACCGTTTATCTCCTGCTGTTTGATGGGTATGATATGAACCTTGCAATTTTACTTTTTTGTTTTCTTGTT TTTTATGTACTCCGTTTTTGCATGTGTTCTTCATAGATAAAAATAAGTTTGTGAGATTCTTGAATTTTTTTGTAACATTT TCCACATTTGAACTCAAATTTTGAAAAGCAAGTACTGAATTCACTTGGAAATGATGGCTATTTTTCTTGTAAGTGACTAA TTGCTTGGAGGGAAAGCATGTTTTAAAGGGTAAATTTTGAAGTTTTTTTGGGTATTTGATTACTTCTCAGCATTCGTTCC TGCTCTTTTCCAAATTAGGAGAAAAAAACCCAATTCTACTCTGCATTAAAAATGCTTCCATCTAGTGGCTGCATGGAGTG TTTTTCTGTCTAAAAGGGTATTCCTGTGTCTATTAGGTTTTCAGTTGCCTATAACTAGTTTCATGGCCTAGACTGACATC TGGTTGAAGAAAATCACCTTTTGTTTTATGTGATTTGTAACTAGTTTCATGGCCTAGAATCTCTTGCTTAAAAGTCTTTT CTCAGTACTCTTCTTCATCTTCTTGTTTTTCATATTTTGGCTAGTTTTTATTATCAGTTAGATCTGCAAATTCTTCTTTT GACAATAGGACTTGGTTTTAATGCACAATCTGCAATAATCAGCAATGTGCTACTGTGTTTCTTCATGGTTCATGTCTATT TTCCTAAGGTTATTGGAACTTTTTGCAGTGACAAGATAAAAACTATGGACATTTCAGAGTACACAAGGATTGTTTTTGAT AAACTTCATAGATTTGAGCCAGAGCATGCCACAAAGATCATTGGCTACCTCCTTCTGCAAGACCATGTTGATCAAGAGAT GGTTAAACTGGCTTCATTCCCAGACCATTTGATCCGCGAAGTCGCGCTCAAGGCGAAAACCGAGCTTCAAAAATTGGTGG CTAAATCAAACATTCACCCAATTTCACTCAACCCAATTTCCCCCAGCACTTCCACTTCAACACAAAGCTTCCAGAATGCA GAATTTATTTCAATGGGTTACTGGGATTCTATGCCAGAACTTCAAAAGCAAGCCCCAATGTTCAGTTTGGAGAATCATGC AGACACTATAACTACTGGGGGTGCTAAAATTGCTAATGAGTACTATGGCTTAGAGGCATCACCTGGCAATGTAAGTGGAA ATGCTGGTAGAAGGTTTCCAAATGTGTCAGAATTTCAAGTCAAGACCTGTCACTATTTCAACAAAGGATATTGCAGGCAT GGGAATAGCTGCAGATACTACCATGGACAAGTTGTGCCTGAGATATTCTCTCTGATGCATGGAAATGATGGTTTTAACGA CAATCAGGCGATTTCACCGGGTTCACTAGCGCAGTTAGAGTCGGAAATTGTTGAGCTCCTGAAACAAAGAGGCAATCCTA TTTCAATCGCTTCACTTCCAATGGCATACTATGATAAGTATAAGAAGGTACTGCAGGCAGAAGGGTACCTAACTGAGAGC CAGAGACACGGTAAGTCTGGCTACAGTTTAACGAAGCTTCTCATCCGATTGAACAATAGTATTCGCGTAATTGACAGGTG AAGACTAATGATTAATGAAATTTTCTGTAGAAATTTGTATGTAACAAATTGATTGAATCCTTCTTTTTTCTAATTTGAGT CTTGTCGCGGTTAATTAGCAGGCCTCATGGTCAGCATGCTGTGGTTCTGGCAGAAGATGCTCCGAAATCCCGGGGAAAGG TAGAGTTTGGTCATAATATTAGTGCATTAAGACAAATATACCTGACATTTCCAGCTGATAGCACTTTCACTGAGGAGGAT GTCTCAAACTACTTCAGGTAAATTATTACATTTGATGTAATGTAACTCATACTTTTCATGCTTCTTTGTAGTTAATGGTT TTATGGTAGAAAATTCAAATCGCTTTAACTTGTTTTCCTTTGTAGCACTTTTGGGTGTGTTGAAGATGTAAGGATTCCTT GCCAGCAGAGAAGGATGTTTGGATTTGTCACATTTGTTGATCCAGAAACTGTTAAGATGATTTTGGATAAGGCAACTCCG CATTATGTTCGTGGATCTCGGGTTCTTGTGAAACCTTACAAGGAGAAGCCAAAACTTTTGGACAGGTGGATTTCTTTTTT GTTATTTTCTTTCAGTTCTATTTCTGTTGGAGGTTGCTTTTAGTTTTATGGATTCAAATTCTTCTATTGCCAATGTAAGT GTATTGCTTATGATGAAAGCTTGAAATGACTATATAATTATCATTACTTTTTACAAGTACAGTTCCCATGTTCTTGAGAC ATTGACATTGGCAAATGCTAAGTAGCATAAATAAGTGTTTAGATCTTATCATGATAATAGTTTCTGAAATGCCTCCTCTT ATAAGTCTTATTCACTATTAATGTTGTTCTTGTTATTTCCATGTGTAATTCAATTTGGATGCAGGAAGTACCCAGATAGA ATCGAGCATCCTGATTGTTATTCCCCACACTATTACAGCGACACCGAATTTATCTCAAGTATGATATTCTCTAGTTTGGA TCCTACTTTTTTCTTCTCCAAGTCATGTGAAAGTTCTAAATGTTTATAATGATATGCATATACTTTGCTTTTAGCCTGTT TCTTTTGTACTAAATCTAACACAACGTTTATAGTTCCGAGAAGTTGCAGAAACCCTCGATCGCTGAGGAGGCTGCTCGTT GAAGAGCAAGAGCAGGCCCTTGAATTTCAGAGGAGGCATCTTGCAGCGCTGCAACTGACCCAAAAATCTTTGTCCATCAA CATGGATGGGTTAAAAGTTTCAGATGGTGAGTGGCGACATGGATTGCATATTCACAAGTTTCATTACATTTCTCCTTTTC TATCCTCCCTACCAAGTTGTATCTTTGTACAAATTCAAATATTTCCATTGCAGATCATTTCAATGTCCATCTTGCAGAAT CTTTCAGTCATGAGTCAAACAACAAACCTGGCTATACAAATGCCAATTACACTGATGAGGACAGGTATGAATCAATCGCT AATAGCTTTCCCTTCATAATATAAGTTGATCCAAACAATCTCTTAGATGCCCATTTCTCAATGTTAGTAACTTAAATGAT TTCATTAAACATGTCATTTTGTTGAACATCATTCTCTTGTCCTTAGCAAAATATGAACTACCAATAATTTTTTTTATGTT TGTTTTACTCTCATGCTTGTTTTACTCGTTCACACGGTGGATGGTATTATTCTTTCCAAACACGTAGTGCGGTGGCTGCC CTCTTCTCGGATTTGGGTTCCTTGCCACACCAGGAAAACCTACATTCACGCAGTCAAGAAATCTGCACTGTTTGATCAAG ATCGGTTGGCTCATTTTTTTCATCAAGATTGGTCAGCTAGAAAATAGCTAAAGATATGAGTAATTTGCTCTTGATCGAAC AACTTAGATTCGATGATTGTGTGTATTTAGGAATTCTATAACTGTAGAGAATTCAAACTCCACTATTCTTGTGGCACAAC TAAAATTGTTTAACTCTTTATTTATGAAATAATTTTATGCAGCAGTCAAGTATTGAATCTTCCAGACAGTCCCTTTTCAT TTCCAGTAGATAGTGGAATTTCAGCAGTCATGTAGCTTCGCTTCAGAAACACTCAGAGATATAGAGTTACAGTAGCTCAA GACCAAAGGAAAATTTTCTAGTTTCATATAAACAGTAACACAGTCCTTTCTGTTGATTGATCTCTTTTCTCAACTAGCGC ATCGGTTTAGTCAAAGTCTCTGGCAAGTACATACAAGCTGAACACGAGGTTCTTCACATCTGAATTGGTGGAATTAACAA CAATTTAGTGACACATGTAAGAAGGTTAATTATAGTTTTTAGTTACATAAATGTGGCAAAAGGTTTGGTTGGCTTCTAGA AGACAGTGTAGTTAGGAGCTTATTTAAGAACTAATTTCTGGATGAAAGGAACTAGGATAGAAAGAGTAATCAATTACTCA TTGAGAACAAGTAAATTTACAATAATTTTCACTAGGCCCTTATAAGTATTTGTCTATTGGTGTTCTTTGAATGTTTTTGG ATGGCAAATTCTTTGTTATTGTCCTGAAACAATGCTAGAAATCATTTTCAAATTAATAAAAGAGAATATTTTATTTTGAT TGCCTTTAATGCTATCCAAAGGACAAAACAACTTTCCCTCTTCCTTTATTTCTTGATGCCCAAGAAAAT
CDS sequence (LotjaGi6g1v0149000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACATTTCAGAGTACACAAGGATTGTTTTTGATAAACTTCATAGATTTGAGCCAGAGCATGCCACAAAGATCATTGG CTACCTCCTTCTGCAAGACCATGTTGATCAAGAGATGGTTAAACTGGCTTCATTCCCAGACCATTTGATCCGCGAAGTCG CGCTCAAGGCGAAAACCGAGCTTCAAAAATTGGTGGCTAAATCAAACATTCACCCAATTTCACTCAACCCAATTTCCCCC AGCACTTCCACTTCAACACAAAGCTTCCAGAATGCAGAATTTATTTCAATGGGTTACTGGGATTCTATGCCAGAACTTCA AAAGCAAGCCCCAATGTTCAGTTTGGAGAATCATGCAGACACTATAACTACTGGGGGTGCTAAAATTGCTAATGAGTACT ATGGCTTAGAGGCATCACCTGGCAATGTAAGTGGAAATGCTGGTAGAAGGTTTCCAAATGTGTCAGAATTTCAAGTCAAG ACCTGTCACTATTTCAACAAAGGATATTGCAGGCATGGGAATAGCTGCAGATACTACCATGGACAAGTTGTGCCTGAGAT ATTCTCTCTGATGCATGGAAATGATGGTTTTAACGACAATCAGGCGATTTCACCGGGTTCACTAGCGCAGTTAGAGTCGG AAATTGTTGAGCTCCTGAAACAAAGAGGCAATCCTATTTCAATCGCTTCACTTCCAATGGCATACTATGATAAGTATAAG AAGGTACTGCAGGCAGAAGGGTACCTAACTGAGAGCCAGAGACACGGTAAGTCTGGCTACAGTTTAACGAAGCTTCTCAT CCGATTGAACAATAGTATTCGCGTAATTGACAGGCCTCATGGTCAGCATGCTGTGGTTCTGGCAGAAGATGCTCCGAAAT CCCGGGGAAAGGTAGAGTTTGGTCATAATATTAGTGCATTAAGACAAATATACCTGACATTTCCAGCTGATAGCACTTTC ACTGAGGAGGATGTCTCAAACTACTTCAGCACTTTTGGGTGTGTTGAAGATGTAAGGATTCCTTGCCAGCAGAGAAGGAT GTTTGGATTTGTCACATTTGTTGATCCAGAAACTGTTAAGATGATTTTGGATAAGGCAACTCCGCATTATGTTCGTGGAT CTCGGGTTCTTGTGAAACCTTACAAGGAGAAGCCAAAACTTTTGGACAGGAAGTACCCAGATAGAATCGAGCATCCTGAT TGTTATTCCCCACACTATTACAGCGACACCGAATTTATCTCAATTCCGAGAAGTTGCAGAAACCCTCGATCGCTGAGGAG GCTGCTCGTTGAAGAGCAAGAGCAGGCCCTTGAATTTCAGAGGAGGCATCTTGCAGCGCTGCAACTGACCCAAAAATCTT TGTCCATCAACATGGATGGGTTAAAAGTTTCAGATGAATCTTTCAGTCATGAGTCAAACAACAAACCTGGCTATACAAAT GCCAATTACACTGATGAGGACAGTCAAGTATTGAATCTTCCAGACAGTCCCTTTTCATTTCCAGTAGATAGTGGAATTTC AGCAGTCATGTAG
Protein sequence (LotjaGi6g1v0149000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDISEYTRIVFDKLHRFEPEHATKIIGYLLLQDHVDQEMVKLASFPDHLIREVALKAKTELQKLVAKSNIHPISLNPISP STSTSTQSFQNAEFISMGYWDSMPELQKQAPMFSLENHADTITTGGAKIANEYYGLEASPGNVSGNAGRRFPNVSEFQVK TCHYFNKGYCRHGNSCRYYHGQVVPEIFSLMHGNDGFNDNQAISPGSLAQLESEIVELLKQRGNPISIASLPMAYYDKYK KVLQAEGYLTESQRHGKSGYSLTKLLIRLNNSIRVIDRPHGQHAVVLAEDAPKSRGKVEFGHNISALRQIYLTFPADSTF TEEDVSNYFSTFGCVEDVRIPCQQRRMFGFVTFVDPETVKMILDKATPHYVRGSRVLVKPYKEKPKLLDRKYPDRIEHPD CYSPHYYSDTEFISIPRSCRNPRSLRRLLVEEQEQALEFQRRHLAALQLTQKSLSINMDGLKVSDESFSHESNNKPGYTN ANYTDEDSQVLNLPDSPFSFPVDSGISAVM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 510 | 510 | 4.3E-235 | – | |
| PANTHER | 1 | 510 | 510 | 4.3E-235 | – | |
| Gene3D | 122 | 189 | 68 | 4.5E-6 | – | |
| SUPERFAMILY | 155 | 182 | 28 | 6.75E-5 | ||
| ProSiteProfiles | 156 | 183 | 28 | 14.54 | ||
| Pfam | 159 | 182 | 24 | 2.5E-4 | ||
| Pfam | 207 | 283 | 77 | 2.7E-9 | ||
| ProSiteProfiles | 207 | 290 | 84 | 11.699 | ||
| ProSiteProfiles | 308 | 383 | 76 | 11.008 | ||
| SMART | 309 | 379 | 71 | 7.4E-8 | ||
| CDD | 310 | 379 | 70 | 2.91757E-35 | ||
| Gene3D | 315 | 386 | 72 | 3.7E-12 | ||
| Pfam | 319 | 374 | 56 | 1.7E-7 | ||
| SUPERFAMILY | 319 | 397 | 79 | 2.71E-13 | ||
| Coils | 430 | 450 | 21 | - | – | |
| MobiDBLite | 466 | 496 | 31 | - | – | |
| MobiDBLite | 470 | 495 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi6g1v0149000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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