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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0149700 |
| Transcript ID | LotjaGi6g1v0149700.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tornado 1; TAIR: AT5G55540.1 tornado 1; Swiss-Prot: sp|Q9FJ57|TRN1_ARATH Protein TORNADO 1; TrEMBL-Plants: tr|I1KYG3|I1KYG3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0149700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:42566179..42569542) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCATCAAATCAGAACCTGAAGGAGCTACAATGGGCTCTACAAGCAATCAATTCAGAGGTCCTAAACCTGCACAGTAT CTCCTTCTACCTTTCTCAACCAACTTCAGCTTGTTACCAAGAAACAGATAACTCCATAAACATAAACATCTCCAAGGAAA ATCTTCCATTCTTCTCTGACCTCTTGACAGAATTAGCAGCATCCAAGAGCACCAAATCCACCTTGAGAAACTTGGAGTTC CACAGAGTTGAATGGGAAATACAACAGGTAAGAAACCTTGGCACCTTGCTGGGGAATAATCAAAGCATACAGCAAGTTGT TTTTCGAAGAAACAGGTTCAATGGGAAAACCCTATCAGACCTTTCTGACATTCTGAAGGCAAATAAAGTGATCAAAGAGA TCATGCTTTCAGAATCAGGCATTGGATCTGTTGGAGCTGGACTCATTGCTTCTGCTCTTATGGTGAATGAGAGTTTGGAG GAGCTTCAGATATGGGAAGATTCCATAGGATCAAGAGGTGCTGAGGAGCTTTCCAAGATGATTGAAGTTAACCCAACTCT TAAATTGTTGACAATTTTTGACTCCAATGCAATTACAGCTACCCCTCTGATATCTGCAGTTTTGGCAAGGAACAGAAACA TGGAAGTTCATGTTTGGAGTGGAGAAAATGGTGAAAAAAGTTCCAAGGTGGTTGAGTTTGTGCCTGGGAACAGCACACTT AGAATTTACAAGCTTAACCTCTCAGGTGCTTGCAGGGTTATATGCTCCTTAGGAATGAACTCCACTGTCAAATCTCTTGA CATGACCGGAGTCAAGCTAAAATCGCGGTGTGCGAAGGAACTTAGATGGGTTTTAGAACAGAACCAGACCCTTAAAGAGC TGAACTTGTCCAGAACATGCCTTAAAGACAAGGGCATTGTGTATGTTGCAGCTGGACTCTTCAAGAATCATAGTCTGCAA ACCTTACATCTAACTGGAAATTGGTTCAGTGGAGTAGGTGTGGAGCATCTACTCTGCCCTCTGAGTAGATTTTCAGCCTT GCAAATGCAAGCCAACATTACTTTGAAGTGTGTTACTTTTGGAGGGGGGAGAACAAGAATAGGAAGGGATGGTTTAGCTG CTCTCACACAGTTTCTAACAACCAATGAGACAGTGAGGAAGTTGGGAATACATGATGATGAGAGTTTGAGATCAGATGAC TATGTTAAAATCTTCAAGAGCTTAGAGAAGAATGCTAGCTTGAAATGTTTGTCATTGCAAGGATGCAAAGGTGTGCAAGG AGAGACGTTGCTGCAGACAATTATGGAGACACTGCACATAAATCCTTGGATTGAAGATATTGATCTCTCCAGAACACCTT TACACAGTTCTGGAAAGACAACTGGGATTTATCAAAGATTGGGGCAGAATGAGAACACTGAACCAGAAATGGATTTGCTC AAGGACATGCCACTAACAGAACCCAAGAGTTGCAGAGTTTTCTTCTGTGCGCAAGAATGTGCAGGTAAGGTTGATTATTT GTCTTGGATATATTAAGGGTGTATTCGGGTAAGCAACTTAATTAAGCTCTTATGGCAATAAGCGCTTATCATATAAGTTC TTAGTCATAAAGCTAATTTCAGAAACTTATTTAAATAAACTGAAAATAAGTTATAGGTAAGTATAAGCTCTTATTCATAA GCTAATCTGAACAGCTTATGAAAATAAGATCAAAGTAGTTTATAGGTAGGCCAGAAGTTATTTACATACGCTCTCAGAAT CACTTGCATAAGCGCTTATGCTATAAGATAAAATCAAATAAGCTCTTCCAAACATGGTCTAATTTCATGAAACACCACTT CAAAACATATGTTCATGAATCTAAGTTAAGCTCTATTATTTTCTTATAAACACAAGATAAAAGAAAATCAACTTGAATCA TATTTTCAATTATATTTTTCAGGCAAAACAACACTTTGTCATTCAATATCACAAAATTTCTCTGCTTCGACGCTTCCCTA CTTGGATCAAGTCAGAACAATTGTGAACCCTGTGGAGCAGGCTGTAAAAACAGTAGGAATGAAGATAAAAACTTTCAATG ATGAGGATACAAAGATTTCAATATGGAATCTTGCTGGTCAACATGAGTTTTTCTCTTTACATGATCTAATGTTCCCAGGG CATGGTAGTGCATCATTTTTCATTATCATATTGAGTTTATTCAGGAAGCCAAGTAACAAAGAACCAAAAAGCACAGAAGA GATTGAAGAAGACCTGCAATATTGGCTTCGGTTCATAGTTTCCAACTCCAAAAGAGCAGTGCAGCAATGCATGCTACCAA GTGTTGCTGTTGTTCTCACACACTTCGATAAAATTAACCAATCTTCGCAAAATTTTCAGCAAACAGTTGATTCCATTCAG AGATTGAGAGATAAGTTCCAAGGCTTTGTAGACTTCTACCCAACTGTATTTACAGTTGATGCAAGATCATCAGCATCGGT TAGTAAACTCACTCATCACATCCGAAAGACGTGCAAGACGATTCTCCAAAGAGTGCCGCGAGTTTATCAACTTTGCAATG ATCTCATACAGATTTTATCAGACTGGAGATCCGAGAATTACAACAAGCCAGCAATGAAGTGGAAGGAGTTTGGTGAGCTA TGCCAAGTAAAAGTCCCACCTTTGAGAATTCGATCAAGACATTATAACAAAGAGGTGGTGGAAATGAAGAGAAAAGCTGT TGCAACTTGTCTTCATCACATTGGTGAGGTGATTTACTTTGATGAGTTGGGGTTTCTAATTTTAGATTGTGAGTGGTTTT GTGGTGAAGTACTTGGTCAGCTCATAAAACTGAATGTTAGAAAGCAACACTCCTCAGAAAACAGTGGATTTATTAGCAGG AAGGAACTGGAGAAAATCTTGAGGGGAAGCTTACAGAGCCCGATTCCCGGTATGGGTTCAAAGGTGTTTGAGAACTTAGA TGCTAGTGACCTTGTGAGGATGATGCTAAAACTTGAACTCTGTTATGAGCAAGATCCATCAGATCCAAATTCTCTGTTAT TGATTCCCTCCATTCTTGAAGAAGGAAGAGGAAAGCCTCAGAGGTGGCAGCTAAGCACACCAGATTGCATTTATGCAGGA CGTCATCTCGAGTGTGATGATTCAAGCCACATGTTTCTAACTCCAGGATTCTTCCCTCGTTTACAGGTAAGAGTTTCTCT AAGCGTGTTCCCTTTTTCCCCTTCAGTATCAACTTTTGGAATTGTTCTTGCAAATTTTTTTTCTTATTTTCCACTGAAAT GGTTCCTGCACTATCTAGAAGTTTTTATCCATTGTTGGTTACTTTTTTTTTATGAAGGAAATGAGGTGCACAAAATACAT GTAA
CDS sequence (LotjaGi6g1v0149700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCAAATCAGAACCTGAAGGAGCTACAATGGGCTCTACAAGCAATCAATTCAGAGGTCCTAAACCTGCACAGTAT CTCCTTCTACCTTTCTCAACCAACTTCAGCTTGTTACCAAGAAACAGATAACTCCATAAACATAAACATCTCCAAGGAAA ATCTTCCATTCTTCTCTGACCTCTTGACAGAATTAGCAGCATCCAAGAGCACCAAATCCACCTTGAGAAACTTGGAGTTC CACAGAGTTGAATGGGAAATACAACAGGTAAGAAACCTTGGCACCTTGCTGGGGAATAATCAAAGCATACAGCAAGTTGT TTTTCGAAGAAACAGGTTCAATGGGAAAACCCTATCAGACCTTTCTGACATTCTGAAGGCAAATAAAGTGATCAAAGAGA TCATGCTTTCAGAATCAGGCATTGGATCTGTTGGAGCTGGACTCATTGCTTCTGCTCTTATGGTGAATGAGAGTTTGGAG GAGCTTCAGATATGGGAAGATTCCATAGGATCAAGAGGTGCTGAGGAGCTTTCCAAGATGATTGAAGTTAACCCAACTCT TAAATTGTTGACAATTTTTGACTCCAATGCAATTACAGCTACCCCTCTGATATCTGCAGTTTTGGCAAGGAACAGAAACA TGGAAGTTCATGTTTGGAGTGGAGAAAATGGTGAAAAAAGTTCCAAGGTGGTTGAGTTTGTGCCTGGGAACAGCACACTT AGAATTTACAAGCTTAACCTCTCAGGTGCTTGCAGGGTTATATGCTCCTTAGGAATGAACTCCACTGTCAAATCTCTTGA CATGACCGGAGTCAAGCTAAAATCGCGGTGTGCGAAGGAACTTAGATGGGTTTTAGAACAGAACCAGACCCTTAAAGAGC TGAACTTGTCCAGAACATGCCTTAAAGACAAGGGCATTGTGTATGTTGCAGCTGGACTCTTCAAGAATCATAGTCTGCAA ACCTTACATCTAACTGGAAATTGGTTCAGTGGAGTAGGTGTGGAGCATCTACTCTGCCCTCTGAGTAGATTTTCAGCCTT GCAAATGCAAGCCAACATTACTTTGAAGTGTGTTACTTTTGGAGGGGGGAGAACAAGAATAGGAAGGGATGGTTTAGCTG CTCTCACACAGTTTCTAACAACCAATGAGACAGTGAGGAAGTTGGGAATACATGATGATGAGAGTTTGAGATCAGATGAC TATGTTAAAATCTTCAAGAGCTTAGAGAAGAATGCTAGCTTGAAATGTTTGTCATTGCAAGGATGCAAAGGTGTGCAAGG AGAGACGTTGCTGCAGACAATTATGGAGACACTGCACATAAATCCTTGGATTGAAGATATTGATCTCTCCAGAACACCTT TACACAGTTCTGGAAAGACAACTGGGATTTATCAAAGATTGGGGCAGAATGAGAACACTGAACCAGAAATGGATTTGCTC AAGGACATGCCACTAACAGAACCCAAGAGTTGCAGAGTTTTCTTCTGTGCGCAAGAATGTGCAGGCAAAACAACACTTTG TCATTCAATATCACAAAATTTCTCTGCTTCGACGCTTCCCTACTTGGATCAAGTCAGAACAATTGTGAACCCTGTGGAGC AGGCTGTAAAAACAGTAGGAATGAAGATAAAAACTTTCAATGATGAGGATACAAAGATTTCAATATGGAATCTTGCTGGT CAACATGAGTTTTTCTCTTTACATGATCTAATGTTCCCAGGGCATGGTAGTGCATCATTTTTCATTATCATATTGAGTTT ATTCAGGAAGCCAAGTAACAAAGAACCAAAAAGCACAGAAGAGATTGAAGAAGACCTGCAATATTGGCTTCGGTTCATAG TTTCCAACTCCAAAAGAGCAGTGCAGCAATGCATGCTACCAAGTGTTGCTGTTGTTCTCACACACTTCGATAAAATTAAC CAATCTTCGCAAAATTTTCAGCAAACAGTTGATTCCATTCAGAGATTGAGAGATAAGTTCCAAGGCTTTGTAGACTTCTA CCCAACTGTATTTACAGTTGATGCAAGATCATCAGCATCGGTTAGTAAACTCACTCATCACATCCGAAAGACGTGCAAGA CGATTCTCCAAAGAGTGCCGCGAGTTTATCAACTTTGCAATGATCTCATACAGATTTTATCAGACTGGAGATCCGAGAAT TACAACAAGCCAGCAATGAAGTGGAAGGAGTTTGGTGAGCTATGCCAAGTAAAAGTCCCACCTTTGAGAATTCGATCAAG ACATTATAACAAAGAGGTGGTGGAAATGAAGAGAAAAGCTGTTGCAACTTGTCTTCATCACATTGGTGAGGTGATTTACT TTGATGAGTTGGGGTTTCTAATTTTAGATTGTGAGTGGTTTTGTGGTGAAGTACTTGGTCAGCTCATAAAACTGAATGTT AGAAAGCAACACTCCTCAGAAAACAGTGGATTTATTAGCAGGAAGGAACTGGAGAAAATCTTGAGGGGAAGCTTACAGAG CCCGATTCCCGGTATGGGTTCAAAGGTGTTTGAGAACTTAGATGCTAGTGACCTTGTGAGGATGATGCTAAAACTTGAAC TCTGTTATGAGCAAGATCCATCAGATCCAAATTCTCTGTTATTGATTCCCTCCATTCTTGAAGAAGGAAGAGGAAAGCCT CAGAGGTGGCAGCTAAGCACACCAGATTGCATTTATGCAGGACGTCATCTCGAGTGTGATGATTCAAGCCACATGTTTCT AACTCCAGGATTCTTCCCTCGTTTACAGGAAATGAGGTGCACAAAATACATGTAA
Protein sequence (LotjaGi6g1v0149700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASNQNLKELQWALQAINSEVLNLHSISFYLSQPTSACYQETDNSININISKENLPFFSDLLTELAASKSTKSTLRNLEF HRVEWEIQQVRNLGTLLGNNQSIQQVVFRRNRFNGKTLSDLSDILKANKVIKEIMLSESGIGSVGAGLIASALMVNESLE ELQIWEDSIGSRGAEELSKMIEVNPTLKLLTIFDSNAITATPLISAVLARNRNMEVHVWSGENGEKSSKVVEFVPGNSTL RIYKLNLSGACRVICSLGMNSTVKSLDMTGVKLKSRCAKELRWVLEQNQTLKELNLSRTCLKDKGIVYVAAGLFKNHSLQ TLHLTGNWFSGVGVEHLLCPLSRFSALQMQANITLKCVTFGGGRTRIGRDGLAALTQFLTTNETVRKLGIHDDESLRSDD YVKIFKSLEKNASLKCLSLQGCKGVQGETLLQTIMETLHINPWIEDIDLSRTPLHSSGKTTGIYQRLGQNENTEPEMDLL KDMPLTEPKSCRVFFCAQECAGKTTLCHSISQNFSASTLPYLDQVRTIVNPVEQAVKTVGMKIKTFNDEDTKISIWNLAG QHEFFSLHDLMFPGHGSASFFIIILSLFRKPSNKEPKSTEEIEEDLQYWLRFIVSNSKRAVQQCMLPSVAVVLTHFDKIN QSSQNFQQTVDSIQRLRDKFQGFVDFYPTVFTVDARSSASVSKLTHHIRKTCKTILQRVPRVYQLCNDLIQILSDWRSEN YNKPAMKWKEFGELCQVKVPPLRIRSRHYNKEVVEMKRKAVATCLHHIGEVIYFDELGFLILDCEWFCGEVLGQLIKLNV RKQHSSENSGFISRKELEKILRGSLQSPIPGMGSKVFENLDASDLVRMMLKLELCYEQDPSDPNSLLLIPSILEEGRGKP QRWQLSTPDCIYAGRHLECDDSSHMFLTPGFFPRLQEMRCTKYM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 569 | 569 | - | – | |
| PANTHER | 2 | 916 | 915 | 0.0 | – | |
| SUPERFAMILY | 10 | 461 | 452 | 3.14E-41 | – | |
| Gene3D | 50 | 217 | 168 | 2.4E-20 | ||
| SMART | 128 | 155 | 28 | 54.0 | – | |
| SMART | 156 | 183 | 28 | 4.5 | – | |
| Gene3D | 228 | 350 | 123 | 2.7E-17 | ||
| Pfam | 287 | 307 | 21 | 0.0098 | ||
| SMART | 288 | 315 | 28 | 0.52 | – | |
| Pfam | 315 | 337 | 23 | 0.003 | ||
| SMART | 316 | 343 | 28 | 92.0 | – | |
| Gene3D | 351 | 478 | 128 | 2.1E-9 | ||
| SUPERFAMILY | 477 | 683 | 207 | 1.61E-9 | ||
| Gene3D | 490 | 694 | 205 | 1.2E-13 | – | |
| Phobius | 570 | 588 | 19 | - | – | |
| Phobius | 589 | 924 | 336 | - | – | |
| Pfam | 750 | 889 | 140 | 5.5E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0149700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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