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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0167800 |
| Transcript ID | LotjaGi6g1v0167800.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Callose synthase-like protein; TAIR: AT1G06490.1 glucan synthase-like 7; Swiss-Prot: sp|Q9SHJ3|CALS7_ARATH Callose synthase 7; TrEMBL-Plants: tr|A0A1J7HMA2|A0A1J7HMA2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0167800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:45326857..45328043) extracted from Lotus japonicus Gifu genome v1.2.
ATGTGGTTTTTGGCTGTTTCCTGGTTGTTTGCTCCTTTCTTGTTCAATCCTTCTGGTTTTGAATGGCAAAAAACCGTGGA TGATTGGACCGATTGGAAGCGGTGGATGGGGAATCGTGGTGGTATCGGTATCCCGTCTGAAAAAAGCTGGGAGTCTTGGT GGGATGAAGAAAATGAGCACCTGAAATACTCAAATATCAGGGGGAAAATACTTGAGATCGTTCTCGCGTTTCGCTTCTTT ATCTACCAATATGGAATTGTCTACCAGCTGAACATTACTCATCGTAGCAAAAGTATTATGGTAGAGCAACTAAATTCTGT GTTCTCCAATCCTATTAATGGTTGCAAGTTTCATGGCACCATCTTACTACCTTAAGTTTTTTCTTGTAGGTATTTGGACT TTCTTGGGGAGTTTTGTTAATAGTCCTTATTGTCTTGAAGGTATGTAAATGCTACCCGGGGATCAAGAGTGAGTTTCTAC TACTCCGTTGATATTTGCATCAATTTATGCCTAATCAGTTGTCTTCTTTTGTTTGTATGAATTTCCACAGATGGTTTCCA TGGGTAGACGAAGATTCGGAACCGACTTTCAGCTCATGTTTCGTATTCTCAAGGCACTTCTCTTTCTCGGCTTCTTGTCA GTCATGACTGTATTGTTCGTGGTATGTGCACTGACTATATCAGATTTGTTTGCTGCCTTTCTTGCCTTCATGCCTTCCGG ATGGGCCATTATTTTGGTAAGTTAAATCTTCTGCATCTTACAGAAGCACTTGTTCATAACAATTTTCTTTTCTCTTTTTG TCTAACATGTCTTATGCAGATTGAAGAAATTTTGCTATCTATTCAACTTCTACAGCATCCTAAAATTGCAGGCACTATTC CATCTAAATACTTCATTCAAACAAAACCACTGATGTTTCCTCCTTTTTCTTTTTGCAATCAAAGATTGCACAAACATGCA GGGGACTCTTAAAGGGAGCTAAACTATGGAATTCAGTTAAAGAGCTCTCCAGAGCATATGAATATACAATGGGATTGATA ATCTTCATGCCGGTAGCCGTTTTGTCATGGTTCTCGTTTGTGTCAGAGTTCCAAACCCGGTTGCTATTCAATCAAGCATT CAGTAGAGGGCTCCAGATTTCAATGATTCTTGCTGGAAAGAAGGACACATATAATAAAGTTAAATGA
CDS sequence (LotjaGi6g1v0167800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGTTTTTGGCTGTTTCCTGGTTGTTTGCTCCTTTCTTGTTCAATCCTTCTGGTTTTGAATGGCAAAAAACCGTGGA TGATTGGACCGATTGGAAGCGGTGGATGGGGAATCGTGGTGGTATCGGTATCCCGTCTGAAAAAAGCTGGGAGTCTTGGT GGGATGAAGAAAATGAGCACCTGAAATACTCAAATATCAGGGGGAAAATACTTGAGATCGTTCTCGCGTTTCGCTTCTTT ATCTACCAATATGGAATTGTCTACCAGCTGAACATTACTCATCGTAGCAAAAGTATTATGGTATTTGGACTTTCTTGGGG AGTTTTGTTAATAGTCCTTATTGTCTTGAAGATGGTTTCCATGGGTAGACGAAGATTCGGAACCGACTTTCAGCTCATGT TTCGTATTCTCAAGGCACTTCTCTTTCTCGGCTTCTTGTCAGTCATGACTGTATTGTTCGTGGTATGTGCACTGACTATA TCAGATTTGTTTGCTGCCTTTCTTGCCTTCATGCCTTCCGGATGGGCCATTATTTTGATTGCACAAACATGCAGGGGACT CTTAAAGGGAGCTAAACTATGGAATTCAGTTAAAGAGCTCTCCAGAGCATATGAATATACAATGGGATTGATAATCTTCA TGCCGGTAGCCGTTTTGTCATGGTTCTCGTTTGTGTCAGAGTTCCAAACCCGGTTGCTATTCAATCAAGCATTCAGTAGA GGGCTCCAGATTTCAATGATTCTTGCTGGAAAGAAGGACACATATAATAAAGTTAAATGA
Protein sequence (LotjaGi6g1v0167800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWFLAVSWLFAPFLFNPSGFEWQKTVDDWTDWKRWMGNRGGIGIPSEKSWESWWDEENEHLKYSNIRGKILEIVLAFRFF IYQYGIVYQLNITHRSKSIMVFGLSWGVLLIVLIVLKMVSMGRRRFGTDFQLMFRILKALLFLGFLSVMTVLFVVCALTI SDLFAAFLAFMPSGWAIILIAQTCRGLLKGAKLWNSVKELSRAYEYTMGLIIFMPVAVLSWFSFVSEFQTRLLFNQAFSR GLQISMILAGKKDTYNKVK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 1 | 71 | 71 | 1.0E-14 | ||
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 1 | 23 | 23 | - | – | |
| PANTHER | 1 | 253 | 253 | 3.1E-142 | – | |
| SignalP_EUK | 1 | 19 | 19 | - | – | |
| PANTHER | 1 | 253 | 253 | 3.1E-142 | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| Phobius | 16 | 23 | 8 | - | – | |
| Phobius | 24 | 98 | 75 | - | – | |
| TMHMM | 70 | 92 | 23 | - | – | |
| TMHMM | 99 | 121 | 23 | - | – | |
| Phobius | 99 | 119 | 21 | - | – | |
| Phobius | 120 | 139 | 20 | - | – | |
| TMHMM | 136 | 158 | 23 | - | – | |
| Phobius | 140 | 160 | 21 | - | – | |
| Phobius | 161 | 165 | 5 | - | – | |
| TMHMM | 163 | 183 | 21 | - | – | |
| Phobius | 166 | 184 | 19 | - | – | |
| Phobius | 185 | 203 | 19 | - | – | |
| TMHMM | 203 | 225 | 23 | - | – | |
| Phobius | 204 | 224 | 21 | - | – | |
| Phobius | 225 | 259 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | 1,3-beta-D-glucan synthase complex | A protein complex that catalyzes the transfer of a glucose group from UDP-glucose to a (1->3)-beta-D-glucan chain. | ||
| Molecular function | 1,3-beta-D-glucan synthase activity | Catalysis of the reaction: UDP-glucose + [(1->3)-beta-D-glucosyl](n) = UDP + [(1->3)-beta-D-glucosyl](n+1). | ||
| Biological process | (1->3)-beta-D-glucan biosynthetic process | The chemical reactions and pathways resulting in the formation of (1->3)-beta-D-glucans, compounds composed of glucose residues linked by (1->3)-beta-D-glucosidic bonds. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi6g1v0167800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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