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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0170400 |
| Transcript ID | LotjaGi6g1v0170400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent DNA helicase; TAIR: AT3G51700.1 PIF1 helicase; Swiss-Prot: sp|Q5AXT5|PIF1_EMENI ATP-dependent DNA helicase PIF1; TrEMBL-Plants: tr|A0A151RYM0|A0A151RYM0_CAJCA ATP-dependent DNA helicase; Found in the gene: LotjaGi6g1v0170400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:45707669..45710048) extracted from Lotus japonicus Gifu genome v1.2.
CACCATTTTGCCTCCTTCCGTCTTTCCCTCGCCCCTCACTCTCAGTCACAGTTCATCAAATTCTGTTCCAATCCTCAGAA GCAAACCATGTAATCCAATCCAAATGCTGTTCACAAAAGCCTCATCAATTTGGTAATCGAAAAATTTCCATGTATTTATC GTTTTACTTGTTTAAATTTCCTTAAACTTTGTTAACTTCATCGGTTTTCAATGAAGTTAATGTCACTCTTATGAAAGAAA TTCACTTCTGTTTGATTCCCCATGTTTTTCAGCATCAAATTCATGCAATAACCCAGATGGGTATGTGAGAATAACGAAAA TGATGAGATTTTTCACCATTGGAATAGCGGTTGGTTCATCATGCAGAAGCTTGAGCACAAAGGGTTGTTCTTCAAAACCC TCATCTGGGTCTTACATCAAGTACAAGAACAAGGGTAAGACAACAACAACAACAACAGAGAGAAGACAACAACGTGGGAA GCGGATTCAATGGACTGAGGAGCAGAAGAGTGTGCTGTCTGCTGTGAGTCAGAGGAGTTCTGTGTTTATTACAGGCTCAG CTGGGACTGGAAAGACACAACTGGTCACTGAGGTTGTCAAGTTGTTGAAGAAATTGCACACCAAGTCTAAGGTTTTTGTC ACAGCTTCCACTGGGGTTGCAGCATTTGCTCTCAAGGGTCAAACTTTGCACTCATTTGCCGGGATTCGTTACCCCGTTGA TGATTCTGAACAATTGTTGCGCGTGATTAGGTCTGACAAGAGGGCGTCGAGGAGGTGGCAAAAGGTTGAAGCTTTAGTTA TTGATGAAATTAGCATGGTGGATGGAAGGTTGTTTGATAACCTTCAATTTGTTGCCAAAGAGTTGAAGGGTGTGGATAAA ACATGGGGTGGAATTCAGCTGGTTGTGGTTGGGGATTTCTGTCAGTTACCCCCAATCGCTGATGATGCTTCCAAGGTTGT AAAGTATGCTTTTGAAGCTGATTGTTGGAATGACAGCTTTAGTTTGCAGGTAGAGCTTACTAGGATCTTCAGGCAGTCTG ATCCGCGGTTTATCGAGGTTCTTCAAGGCATAAGGGTGGGGGAAGTTGATCAGGATGACTTGTCATTCCTAGAGAAATAT TGCTCGGAGGCCGAGTGTGATCCCTCTGCAGTGCAGCTCTATCCGTTGAATAGAATCGTTAAGAAAGTGAATGAAGAGAA GCTTAAAAGCTTGCAAAAGGATGTTGTTTTCTATAGAGCTGTTGATGATGGTTGGAATTCTTGGAAGAAGCTGCTAAGTC AGGGGATAGCGCCCGATGAGATCTCCATTTGTTTAGGTGCAAGAGTTATGCTGGTCAAGAATTTAAAAACTTGGAACGGA TTAGTGAATGGAGCCACGGGTACGGTTGTGAAATTTGTTAAGGAAGCGGGCATTGGTGACATCTGCTCCGAAAACCTGCT GCCAGAAGTCAAATTTGATTCGGGGAAAGTTGAGGTGATTGGACCAGAAGAGTGGCATGTAACGGATGGAGATGTAGTTG TTGCTAGGAGGAAGCAGATACCACTTATATTGGCATGGGCTCTGAGCATCCACAAGTGCCAGGGAATGAATCTTGACAAA GCTTACATCAACTTGTCAGGAGCATTTGGCTGTGGAATGGTCTACACAGCACTTTCTCGTGTTAAAAGCTTGGATGGTCT TCATTTATCTGGTTTTACGCCATCAAGTATTCGAGCAAATCCTAAGGTTACAAATTTCTATAGGAATTTGGTTTTGCAAC GTGATAACAAAGATACTAACAATGGTTGCATTGAGAGAAATCAAATCTCTAATAGCATTACCAGAGATTCAGAAAAAGCA GGCACTGCAGAAAACAAGTACCTTTTTTCACTCTCTGATTTCCTATCTAGACGCCTGAAAGGATCCTGAAGATGGCCCTC TTTCTTTATGTCAATATTTACCATGATTTTACTTCTGTGAGTGCCGAATTTTACTTTGGCGTGATTTTTAGGATACACAA TTGTTTGTTTTTTCCCCTTAAAGTGAGGAAGATTTATCAACTAGTTCACTTTGGTCTAGGTTTTGCTTGGCAATGCTGAA CTTTTCATTCTTCTTAGGCAAATGAAGTATATCAGATTAGCTCATCAAGCATGATTCATATCTTCTTTTGTAAATAAAGA AAATGTTTTCCAATTCACTTGCATTTATTTTGATATAATTCCGATTTTTTTATGCTTAAATTTCTGGTGGTGAAAAAAAA AGATTGAGAATTAAAGTGAACTGGTGATGCTTTTAAGTTTTAAGTGGACATCGATACTATGATGATTCAATCACCAATAT CTAACTTTAAGTGGTAGCTGCAAAATAGTGCCTTGTGTTTAATCAGAACTCTCAATCTAG
CDS sequence (LotjaGi6g1v0170400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAGATTTTTCACCATTGGAATAGCGGTTGGTTCATCATGCAGAAGCTTGAGCACAAAGGGTTGTTCTTCAAAACC CTCATCTGGGTCTTACATCAAGTACAAGAACAAGGGTAAGACAACAACAACAACAACAGAGAGAAGACAACAACGTGGGA AGCGGATTCAATGGACTGAGGAGCAGAAGAGTGTGCTGTCTGCTGTGAGTCAGAGGAGTTCTGTGTTTATTACAGGCTCA GCTGGGACTGGAAAGACACAACTGGTCACTGAGGTTGTCAAGTTGTTGAAGAAATTGCACACCAAGTCTAAGGTTTTTGT CACAGCTTCCACTGGGGTTGCAGCATTTGCTCTCAAGGGTCAAACTTTGCACTCATTTGCCGGGATTCGTTACCCCGTTG ATGATTCTGAACAATTGTTGCGCGTGATTAGGTCTGACAAGAGGGCGTCGAGGAGGTGGCAAAAGGTTGAAGCTTTAGTT ATTGATGAAATTAGCATGGTGGATGGAAGGTTGTTTGATAACCTTCAATTTGTTGCCAAAGAGTTGAAGGGTGTGGATAA AACATGGGGTGGAATTCAGCTGGTTGTGGTTGGGGATTTCTGTCAGTTACCCCCAATCGCTGATGATGCTTCCAAGGTTG TAAAGTATGCTTTTGAAGCTGATTGTTGGAATGACAGCTTTAGTTTGCAGGTAGAGCTTACTAGGATCTTCAGGCAGTCT GATCCGCGGTTTATCGAGGTTCTTCAAGGCATAAGGGTGGGGGAAGTTGATCAGGATGACTTGTCATTCCTAGAGAAATA TTGCTCGGAGGCCGAGTGTGATCCCTCTGCAGTGCAGCTCTATCCGTTGAATAGAATCGTTAAGAAAGTGAATGAAGAGA AGCTTAAAAGCTTGCAAAAGGATGTTGTTTTCTATAGAGCTGTTGATGATGGTTGGAATTCTTGGAAGAAGCTGCTAAGT CAGGGGATAGCGCCCGATGAGATCTCCATTTGTTTAGGTGCAAGAGTTATGCTGGTCAAGAATTTAAAAACTTGGAACGG ATTAGTGAATGGAGCCACGGGTACGGTTGTGAAATTTGTTAAGGAAGCGGGCATTGGTGACATCTGCTCCGAAAACCTGC TGCCAGAAGTCAAATTTGATTCGGGGAAAGTTGAGGTGATTGGACCAGAAGAGTGGCATGTAACGGATGGAGATGTAGTT GTTGCTAGGAGGAAGCAGATACCACTTATATTGGCATGGGCTCTGAGCATCCACAAGTGCCAGGGAATGAATCTTGACAA AGCTTACATCAACTTGTCAGGAGCATTTGGCTGTGGAATGGTCTACACAGCACTTTCTCGTGTTAAAAGCTTGGATGGTC TTCATTTATCTGGTTTTACGCCATCAAGTATTCGAGCAAATCCTAAGGTTACAAATTTCTATAGGAATTTGGTTTTGCAA CGTGATAACAAAGATACTAACAATGGTTGCATTGAGAGAAATCAAATCTCTAATAGCATTACCAGAGATTCAGAAAAAGC AGGCACTGCAGAAAACAAGTACCTTTTTTCACTCTCTGATTTCCTATCTAGACGCCTGAAAGGATCCTGA
Protein sequence (LotjaGi6g1v0170400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMRFFTIGIAVGSSCRSLSTKGCSSKPSSGSYIKYKNKGKTTTTTTERRQQRGKRIQWTEEQKSVLSAVSQRSSVFITGS AGTGKTQLVTEVVKLLKKLHTKSKVFVTASTGVAAFALKGQTLHSFAGIRYPVDDSEQLLRVIRSDKRASRRWQKVEALV IDEISMVDGRLFDNLQFVAKELKGVDKTWGGIQLVVVGDFCQLPPIADDASKVVKYAFEADCWNDSFSLQVELTRIFRQS DPRFIEVLQGIRVGEVDQDDLSFLEKYCSEAECDPSAVQLYPLNRIVKKVNEEKLKSLQKDVVFYRAVDDGWNSWKKLLS QGIAPDEISICLGARVMLVKNLKTWNGLVNGATGTVVKFVKEAGIGDICSENLLPEVKFDSGKVEVIGPEEWHVTDGDVV VARRKQIPLILAWALSIHKCQGMNLDKAYINLSGAFGCGMVYTALSRVKSLDGLHLSGFTPSSIRANPKVTNFYRNLVLQ RDNKDTNNGCIERNQISNSITRDSEKAGTAENKYLFSLSDFLSRRLKGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 15 | 15 | 5.0 | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 18 | 18 | - | – | |
| Phobius | 1 | 17 | 17 | - | – | |
| Phobius | 4 | 12 | 9 | - | – | |
| Phobius | 13 | 17 | 5 | - | – | |
| Phobius | 18 | 529 | 512 | - | – | |
| Gene3D | 30 | 251 | 222 | 8.9E-39 | – | |
| MobiDBLite | 34 | 57 | 24 | - | – | |
| PANTHER | 35 | 483 | 449 | 5.5E-118 | – | |
| PANTHER | 35 | 483 | 449 | 5.5E-118 | – | |
| MobiDBLite | 41 | 57 | 17 | - | – | |
| SUPERFAMILY | 54 | 250 | 197 | 1.58E-24 | ||
| Pfam | 59 | 259 | 201 | 2.3E-39 | ||
| CDD | 61 | 238 | 178 | 1.44126E-65 | – | |
| SUPERFAMILY | 185 | 477 | 293 | 1.57E-33 | ||
| Pfam | 277 | 359 | 83 | 5.3E-8 | ||
| CDD | 410 | 455 | 46 | 1.07682E-10 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Telomere maintenance | Any process that contributes to the maintenance of proper telomeric length and structure by affecting and monitoring the activity of telomeric proteins, the length of telomeric DNA and the replication and repair of the DNA. These processes includes those that shorten, lengthen, replicate and repair the telomeric DNA sequences. | ||
| Molecular function | DNA helicase activity | Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA helix. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. |
Expression pattern of LotjaGi6g1v0170400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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