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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0175200 |
| Transcript ID | LotjaGi6g1v0175200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TIR-NBS-LRR class disease resistance protein; TAIR: AT5G18370.1 disease resistance protein (TIR-NBS-LRR class) family protein; Swiss-Prot: sp|Q5PQS6|SMG9_RAT Protein SMG9; TrEMBL-Plants: tr|V7CID3|V7CID3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0175200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:46550483..46554816) extracted from Lotus japonicus Gifu genome v1.2.
ACGAAGATACAAGAGAAATAGTCAACACTCGTAAAACCCATATTCACTCACTCACAATGGCGGGCTCTGAGCCCTCTCCT TCTCCAAAAATCCTTCTAGCAAAGCCCGGTCTCGTTACCGGAGGCCCCGTCGCCGGCAAGTTCGGCCGCGGCGCCGCCGG CGAAGATGATTCCGCCCAGCACCGTTCTCGTCTCCCTTCTGTCGCATCCCTCAACCTTCTCTCCGATTCCTGGGACTTCC ACATCGATCGCTTTCTCCCCGTAAGTAATCTCCCTCCAATCAATTTTTCGCTCAACTCCATAGAAATTAATCGCAGTTGA GTTGGGTTTTCAATACTCTGCAGTTTTTGACTGAAAACACGGACTTCACTGTGATTGGAGTGATTGGGCCACCAGGAGTT GGCAAGTCCACTATAATGAATGAACTTTATGGCTTTGATTCAAGTTCCCCTGGTGAGTTTATTCACATTGTTTAATTTGT TAGCATATGTTTTTGTTTTTAGTTTTTAGGGTGAAAATGAAATGCTTTAGAGTTAGTTCTGTTAGAAGCTACAAGTGTTA GATTCTGAGTGAATGTGGGTTCGATTATGTGCAAATCGTGAAGTAATTTGTAACTTTGATGTCTGAGCCTGCAGGGATGC TACCACCTTTTGCTACACAGTCTGAAGAGAATAGAGCAATGGCAAGGCATTGTTCTACGGGCATTGAACCGAGGATATCT GCTGAACGTATTATTCTTCTTGATACTCAGGTAATGTTGCTAGACTGACACCTATACTTGAAAGAGTGAAACAAAGAGAA AAGAGAGAAATGATAGATATGATATACGATATATAGCCCGCTCAAAAGTGCACTAAATAAGCTCCAATAAGTACTCTTTG GTTTTCATCCAAACGGGTACACGATGTAACAAAGAAAGAAATATGGGAAAAATGGGGTGTATGTAGGTGTCAATGTTGTT GGTTTCTGAAAGTGAGGATGGCTGCCCATAGTAACTTCATTGGTCAAAAAGTTTTTTTAACCATGTAGAAGTATAAGGGA TAATTTCCCCTTCATTCTTTTATTTTCTTGATTTTTGTTTGGGGTTTTGTTTGCTTTCCATTGCTTCCAGTGTTACTCTT TCTTATCTTATGATTTGTGGGATTTCCAGTTTTACATGTGTACTTATTTATTTATTTATTTATATACTTGTAGCCTGTAT TTAGTGCTTCTGTTTTAGCTGAGATGATGAGACCAGATGGCTCTTCAACAGTTTCAGTGCTAAGTGGAGAATCCATGTCA GCTGAATTGGCTCATGAAATTATGGGTATTCAGGTACACAGCAACTCCCAAGCATAGTTTTTTTTTTCTTTTTCGTTTTT TAATGAAAATATAATTCTGGGTATAAACTTTCTAGCTTTCCTTATCATGAGTGGATTTTTTTTCCTTTCTTTTACTTGTT CTGCTGTATCTGATGAAATTGACTATGTTGGGATGCTGCAAGGAATCTTTGTAGCTTGCTGTTCTTCTAGCATCCGTATG TCATATTCTGCTGGTGGTGTCAGAGGGAGTCCATGATGATTGCATGTGGCATTTGATGTTGACGGTATGTGCTTGAATAA TTGCGACTTTATATCGTGTTGAAGTGTTTGGTATCTTGGAAGCTGTTGGCATTTATTGAACATAATATGGTATTGGTATC AGCTCTTATATCATAGTTTTTCTGTCATTTGAAGTTTCTGGCTTCTCCTCTTACTAATAACATGTATAGGATGTTATTGA CTGAAAAAATAGAAATATCATTTTCTGGTAGCATCTTATTGCCTGCAATTTGGTAGACAAGTTTTTTCTGGGCCTCCTTG TTTAATTTAAAATTCTTACAGATCTTGTGTTCTGCACTTAATTTTATATAGTAACGTCAGCAAAACCTATTGATGTGTTG AAAGAGGACTGACCATGCTGCACTTGTTATCATGTAGGTTGACTTGTTGAAGCATGGCATTCCAGACCCATCCTTACTTG CTTCATCCCATTCACAGAGCTCTAGTTCAGGGCATGAGAAAGATAACAAACTTTCTGGACGTGAATACATGGCTACTCCT GTTTTTGTCCACACCAAGTAAGAAATATCTTTCTAACTTCACGCATTGACAAGAAATAGTTGGCATAAATGAGTGATCAC ATGCTGTAATTATTGTGATACAGCCAAGATAATCTCCAAGATGCATCATGATTGCTCCAAACTGTTTGGCTGCTCTTGTT TTTGGTTAATTATTTAATGAAAAGTAGAATTCTAAAAAATTCAAGCCTAGCCAAGACTCGGAGGGAACTAGTACTTAGAA TTGACGAACGGTTCACTTATTTTACAGCTTGATTAGCCACTTGCTATTAACCAAATTCCCTCTTAGTCTGTCATTCTGTG TCAATTGATTTTTAATGAATTAAATAACCTTTTAAATTAAGGTCTATGTTATCTGATGCGTGTGTCACTATATATTTTAA AATATATAAAAAAACCAAGAACCAAAGATTGGAGAAGTTTTTAATGGTGTGCTGATACTGACTAATGGTAAAAGAAAAAT AATTACAAAAGAGGCTCAGGCTGATGCTAGCGTTAGCCTAACACATGGACACAGTACTGATATTATGCATCACATGTGCT TTCTTTGAAGTGAGAATCTCTAGAATGAACTTTATGTTGTATAATGTTCAACCGTGGTGTTTCCATCACAATTGTGCTGA CTTTAATATGCAGTCTATTTGAAAATTGTATAACAAATTAATAATTATCATTTGTTCGGTGTTGCCTTGTATCTACTTTT TCCCCTTATTGAAATAAGGTTGCTGCACAGTGAAGGACTCACTTGTACTCTGTTTTGACTATAGGCTGCATGATCAAGAG TTTACTCCTAAAAATTTTGTACAGTTGAGGAAGACACTCATACAGTACTTCAAACCGTCTTCTTTTGTGAGGGAACATGC CGAACACAAGCCCGAGGAGCATATTTCATCTTCTATGGTTCATGATAGTCCTATGGATTCTAATGTGCCAAGTTTGTTTG CAATCCCATTTAAGAAAAAGGATGAAAATCCGAGAGCTCAGCATGGAAGTTACATTTCAGCACTATGGAAATTACGGGAT CAGGTCTCTCTCCACTGCTCATGCACTCAAATGAATTCCTCAATAGGATCAGATTTTCAAACTCATGGAACATTGCCTGA ATAAGGATACCAAAATTGAAAGTTTTTGTTAAAAATCAAAGCATTTACTGCATTTCTATTTCCTATGTAATAAATATCTT CTTTTTCAATAGGAACTTTGTGCTTTTTATTCTTATCCTAATACGAAGTTATACAGATAAAAAAATAACCCTTGTAGGAT TTATCAAGTTTTGTGAGAAAAAAATGTTTGACTCATTGTGATATGTTTTTCTTGTTTGACAGATATTATCCATGAAGTCA CCATCTTTCACTAGACCTGTGTCTGAGCGTGAATGGTTAAAAAATTCAGCCAAGATATGGGAACAGGTAAAAAACTCCCC AACGATGTTGGAGTACTGCAGAACACTTCAACAATCGGGTATGTTTAGGAGGTGAAATCTTATCAAAGGCAGAAAGATTC AAGACAATCTATGTAACTGCGTTCCTAGATTTATCTTGTTTTTGATACAAAATTATTAAATTTGTGTATGAAACTCACTT TGTCAGCGCTGTTAAATTTAGAAGATATTTATTTGTTAAAATTTTGGCGTTTTTCACCTTTGACGGTGTAATATTGCTCT TGTAGTTTAGTGAGCCTATGATGGGTGTGAAGGTTTGGGTCAGTATTATTCTATGTTGGGTGTAGATTCATTCTTTTAGC ATTTCTCTATTTCGAGCAATGAACATGCTGCAAAAAAAAATTCGGACAATGCTGGAATGTGGACCGTGGTGCACCATCAA AACTGCAGTTCTAAATCCACAAGATGTTGTGGCGTGATGATTAGCTCACCTCGTTCCTTAATCATGAGGTCGGGGTTTGA TCATCACCCATGTAAATGAAGCTCATTTTGTGGTTAGCCATTTATCGCTTAGTGCGTGCACTTGCTGCTAAGGGATTAGT CACGATTGTCAGCGGCGAATACTCTGGGCTAAAAGAAACTTAAGTTCTAATATAATCATAATTTTTAGCAAGCATGTAGG AAATTGAAAATACGTAGGAAACATAGTAGAATCATTTAAAACAAAGAGCCTCGGCCATGAGAGGGGATGATGCATGAGTC ATTGACCACAAACCGCCAAGGGAAGGTCTTCTCCTCGAGCCACAAACGCGACACTAGCACCACGAGAAATGTCATATGCA GCATCAAAATGTAA
CDS sequence (LotjaGi6g1v0175200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGGCTCTGAGCCCTCTCCTTCTCCAAAAATCCTTCTAGCAAAGCCCGGTCTCGTTACCGGAGGCCCCGTCGCCGG CAAGTTCGGCCGCGGCGCCGCCGGCGAAGATGATTCCGCCCAGCACCGTTCTCGTCTCCCTTCTGTCGCATCCCTCAACC TTCTCTCCGATTCCTGGGACTTCCACATCGATCGCTTTCTCCCCTTTTTGACTGAAAACACGGACTTCACTGTGATTGGA GTGATTGGGCCACCAGGAGTTGGCAAGTCCACTATAATGAATGAACTTTATGGCTTTGATTCAAGTTCCCCTGGGATGCT ACCACCTTTTGCTACACAGTCTGAAGAGAATAGAGCAATGGCAAGGCATTGTTCTACGGGCATTGAACCGAGGATATCTG CTGAACGTATTATTCTTCTTGATACTCAGCCTGTATTTAGTGCTTCTGTTTTAGCTGAGATGATGAGACCAGATGGCTCT TCAACAGTTTCAGTGCTAAGTGGAGAATCCATGTCAGCTGAATTGGCTCATGAAATTATGGGTATTCAGCTTGCTGTTCT TCTAGCATCCGTATGTCATATTCTGCTGGTGGTGTCAGAGGGAGTCCATGATGATTGCATGTGGCATTTGATGTTGACGG TTGACTTGTTGAAGCATGGCATTCCAGACCCATCCTTACTTGCTTCATCCCATTCACAGAGCTCTAGTTCAGGGCATGAG AAAGATAACAAACTTTCTGGACGTGAATACATGGCTACTCCTGTTTTTGTCCACACCAAGCTGCATGATCAAGAGTTTAC TCCTAAAAATTTTGTACAGTTGAGGAAGACACTCATACAGTACTTCAAACCGTCTTCTTTTGTGAGGGAACATGCCGAAC ACAAGCCCGAGGAGCATATTTCATCTTCTATGGTTCATGATAGTCCTATGGATTCTAATGTGCCAAGTTTGTTTGCAATC CCATTTAAGAAAAAGGATGAAAATCCGAGAGCTCAGCATGGAAGTTACATTTCAGCACTATGGAAATTACGGGATCAGAT ATTATCCATGAAGTCACCATCTTTCACTAGACCTGTGTCTGAGCGTGAATGGTTAAAAAATTCAGCCAAGATATGGGAAC AGGTAAAAAACTCCCCAACGATGTTGGAGTACTGCAGAACACTTCAACAATCGGGTATGTTTAGGAGGTGA
Protein sequence (LotjaGi6g1v0175200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGSEPSPSPKILLAKPGLVTGGPVAGKFGRGAAGEDDSAQHRSRLPSVASLNLLSDSWDFHIDRFLPFLTENTDFTVIG VIGPPGVGKSTIMNELYGFDSSSPGMLPPFATQSEENRAMARHCSTGIEPRISAERIILLDTQPVFSASVLAEMMRPDGS STVSVLSGESMSAELAHEIMGIQLAVLLASVCHILLVVSEGVHDDCMWHLMLTVDLLKHGIPDPSLLASSHSQSSSSGHE KDNKLSGREYMATPVFVHTKLHDQEFTPKNFVQLRKTLIQYFKPSSFVREHAEHKPEEHISSSMVHDSPMDSNVPSLFAI PFKKKDENPRAQHGSYISALWKLRDQILSMKSPSFTRPVSEREWLKNSAKIWEQVKNSPTMLEYCRTLQQSGMFRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 393 | 390 | 1.8E-148 | ||
| Gene3D | 39 | 143 | 105 | 2.8E-5 | – | |
| SUPERFAMILY | 73 | 117 | 45 | 2.51E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins. |
Expression pattern of LotjaGi6g1v0175200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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