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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0177100 |
| Transcript ID | LotjaGi6g1v0177100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phytoene synthase; TAIR: AT5G17230.1 PHYTOENE SYNTHASE; Swiss-Prot: sp|Q9SSU8|PSY_DAUCA Phytoene synthase, chloroplastic; TrEMBL-Plants: tr|I3T1X4|I3T1X4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0177100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:46904842..46908283) extracted from Lotus japonicus Gifu genome v1.2.
GTCCATACATTTAATGTGTTAGCTAAGGTTACAGCTGAGCATATTCCTCAAGTAGATATGAGCCTTTTACATGTGTGATA ACCCTTCCAATCACATTCCTCTCTATATCCTCACCTCACACTGAGAAAGCCTTAAGACTAGTAATTAGTTGCCTCTCAAA AAGCATCAGTTTTTCTCAACTCAATTTCTCACTTTTCTTTCTTCCTTAGTGGTCTGCACTCTCCACTTTTTGAGCCATTC AAAATCAAAGCTTCCCCAGAAGCAAGGAGGAAGGTGTTCTGTGCCTGAGATGTCTGGTGTTCTTCTTTGGGTGAATTGTG GAACCAAAGGGAACTCCATCTCCTTGCTAGGCCTTGGAGGCAGAGGAAGCAGAAGCCAGAGGAGGTATAGACTGTGCAGT GGCATCAGCTTTGCAAGCTTCTCCAGTGCAGTTGCAGAGCCTTCAAGATCCTCAGAGGAGAGGGTCTATGAAGTGGTGCT GAAGCAAGCAGCACTGGTCAAGGAGCAGAAAAGAGATACAAAGAGAAAATTGAATTTGGATAAGCCCATTGAAGATGATT TCACCAATAAGGATCTGTTGAGTGGTGCTTATGATAGGTGTGGTGAAGTTTGTGCTGAGTATGCCAAGACATTTTATCTG GGTACACACTCTTTTTCTCTTCTCTTTTCACTGTCTCTTGTTCCAACTTCCAATGATTTTAAGTGCATTTTTAAGTTCAT TATTATATCAGTTCCATATTAGTTAATTGCTTTAAACTAATACCTTCACACTTTTCAGTTCTCTTCCTTTTTGGTTGGTT CTAGAGGAATATTTAATTAAGATAATAGAGGGATCTCTTTTTACTCACCTTTGCTCATTGCATCATGCCTAAATAATGTG TTCATTTTGTTGCAAAATGTTACTTCAGTTGTTTAATAATTGACTTTTTTGGAGACTATCCTTTATTGGTTTCTTAGCAT ATGTTGTTGTTAATTTGATTGGTTCCTTCAATTGTGAATCTCAGGGACACAATTGATGACAGAAGAGCGCAGAAAAGCCA TCTGGGCCATTTATGGTATGTGCAATTAGTATTAATATATGACCCTCAAATGGCCTTCCATAACAGCTCCTCTAATGAGG GTTGTGGTGTTTTTTTCTTATTTTGTTTTTGAAACTGATTACTCTTTGTGCATTGCAGTGTGGTGCAGAAGAACAGATGA GTTGGTGGATGGCCCTAACTCTCCACACATCACCCCCAAGGCCTTGGACAGGTGGGAGCAAAGATTAAGTGATGTTTTTG AAGGCCGTCCTTATGACATGTATGATGCTGCCCTTTCAGATACAGTTACAAAGTACCCCGTTGATATACAGGTAAACCTC ATGCTCTTAACTGGAGTCTGAAACTAAACCTTCTAGCATTCCTTGTTTGATATAATAAGGTGATGGTGCTCAAAGCCACA CACATGTGAGGACATTGTCTTAAAACATGAGCTCTTGAGATAAAAAACCTTGAATGGAATTCATACGGAGAAGTCTTAAA TTGACTAGAGACAAGACATTTACATCAATCCGTACCTCTAAGCTTGCTTTTGGGTAGAGCTAACCCAAACTCGAATCGTA ATATACTAATATTGTATTAGAGTCTATCATATATCTGTTTATTGGTCCACATATAAATGGGTCAACCAGAGATATCCAAT CCTGCAAACTTCACACTTCATACGTCCAAGCGTGTGAGGGGTTTGTGTGGAGAGGTTCCAGATTAATTATAGATAAGGTC AAATAAGTCCTTATTAAGGGTAGAGTAATCCTCACCTTTTAACTTCGTTTTTCGGGTACAGCTAGGTCTACCCGAGGAAT TCAGATGTTGTAATGACTGTGTTGCCCAACAAGACCAGTGTTTGAACTATGAGACAGTGAAATTAGTGTACTTAATATTC AACTATATAAAAATTATTTAGCGACAATAGAGGGTTCACATTTTTTATGTGCTAAACTGATCCTATTTTACATTGAACTG TCTGTGAATAGCCTTTCAAGGACATGATCGAAGGGATGAGGTTGGACCTGAGAAAGTCAAGATACAATAACTTTGATGAA CTCTACCTTTACTGCTACTATGTTGCCGGGACTGTGGGCCTTATGAGTGTTCCAGTAATGGGGATAGCACCAGAATCAAA GGCTTCCGCAGAGAGTGTCTACAATGCTGCATTGGCACTTGGCATTGCAAATCAACTCACCAACATTCTCAGAGACGTTG GAGAAGAGTAAGTTTCCTTAAATACAACAACAGTGCCATTTTAGCAAAGTTACAAGTACACCTTGTAATATATATAAATT TGACTCTTAAACTTCACACTTAAACCCAATTCCAAAAAAAGAACTAAAAAACTGATGGAAATTATATTAAACTTGACTTA GGATAGCATTGAATTTCAATTGCCTATATAATTTGAGACAGAATCAGGAGGAAATTATATTAAACTTCTCATGAGATTGT TATAGTAGCCTTGTAAAACTATGACTTGTATGAAAAACATTTCATCAAGATTATGCTTCATCTAATTACTTCTTCTTGTT GAACATTATAGTGCTAGAAGAGGAAGGGTATATCTTCCACAAGATGAATTGGCAAAAGCTGGCCTATCAGATGAAGACAT TTTCAGTGGGAGAGTTACCGACAAGTGGCGAAATTTCATGAAGGGCCAAATAAGGAGAGCAAGGATGTTTTTTGATGAGG CGGAGAAGGGAGTTTCAGAGCTCAGCTCAGCTAGCAGGTGGCCAGTGTGGGCATCTCTTTTGTTGTATAGGCAGATATTA GATTCTATTGAAGCTAATGACTACAATAACTTCACCAAAAGGGCTTATGTAGGAAAAGCTAAGAAGCTCTTATCACTACC TGCTGCTTATGGAAGAGCAATTCTAGGCCCACAAATGTTGACCAAAATGGTTGCAAGGTGAATATGATATTGTGCCCATA AGAATCAAACAGGCTTGGTTTGAGCTTGTAAGTTCTGTTCAGCAGAATGTATTAATGTGTATATTTTGTAGTCTAATTGT ATACATCTCAAGTGAGCAATATTGAAGAGAAATTATTGATTATTAGTTGGCAAGTAAATATTGATCCTGTTCTTCCCATT GCTCTCGCTTCTTGTAGGATACACATGCAACATATAGTAATTAAATGTTGCCCACATTGCAATTCTATAACTAGTTACTA GATTGTGTTGGGGATCTGGGGAGCGTGACACCAGAAAGCAGGGCACATGTGATAGTCAGTCCACTGGGTCAGCTCGCCCA ACTACAAAAAGGCCCAAGAGAGAGAGAAAAAAAAAAAAACTCATTTGGATGCAAAACTTGTTCCAATTTCACCGACGGTT TGGGTCGTTACTAAAATGGCAGAATTTGAAAATGAACAAGTTACTGCCCTTTTACCCGGCCGTCGGTAAAAAAAAATTTG CC
CDS sequence (LotjaGi6g1v0177100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGGTGTTCTTCTTTGGGTGAATTGTGGAACCAAAGGGAACTCCATCTCCTTGCTAGGCCTTGGAGGCAGAGGAAG CAGAAGCCAGAGGAGGTATAGACTGTGCAGTGGCATCAGCTTTGCAAGCTTCTCCAGTGCAGTTGCAGAGCCTTCAAGAT CCTCAGAGGAGAGGGTCTATGAAGTGGTGCTGAAGCAAGCAGCACTGGTCAAGGAGCAGAAAAGAGATACAAAGAGAAAA TTGAATTTGGATAAGCCCATTGAAGATGATTTCACCAATAAGGATCTGTTGAGTGGTGCTTATGATAGGTGTGGTGAAGT TTGTGCTGAGTATGCCAAGACATTTTATCTGGGGACACAATTGATGACAGAAGAGCGCAGAAAAGCCATCTGGGCCATTT ATGTGTGGTGCAGAAGAACAGATGAGTTGGTGGATGGCCCTAACTCTCCACACATCACCCCCAAGGCCTTGGACAGGTGG GAGCAAAGATTAAGTGATGTTTTTGAAGGCCGTCCTTATGACATGTATGATGCTGCCCTTTCAGATACAGTTACAAAGTA CCCCGTTGATATACAGCCTTTCAAGGACATGATCGAAGGGATGAGGTTGGACCTGAGAAAGTCAAGATACAATAACTTTG ATGAACTCTACCTTTACTGCTACTATGTTGCCGGGACTGTGGGCCTTATGAGTGTTCCAGTAATGGGGATAGCACCAGAA TCAAAGGCTTCCGCAGAGAGTGTCTACAATGCTGCATTGGCACTTGGCATTGCAAATCAACTCACCAACATTCTCAGAGA CGTTGGAGAAGATGCTAGAAGAGGAAGGGTATATCTTCCACAAGATGAATTGGCAAAAGCTGGCCTATCAGATGAAGACA TTTTCAGTGGGAGAGTTACCGACAAGTGGCGAAATTTCATGAAGGGCCAAATAAGGAGAGCAAGGATGTTTTTTGATGAG GCGGAGAAGGGAGTTTCAGAGCTCAGCTCAGCTAGCAGGTGGCCAGTGTGGGCATCTCTTTTGTTGTATAGGCAGATATT AGATTCTATTGAAGCTAATGACTACAATAACTTCACCAAAAGGGCTTATGTAGGAAAAGCTAAGAAGCTCTTATCACTAC CTGCTGCTTATGGAAGAGCAATTCTAGGCCCACAAATGTTGACCAAAATGGTTGCAAGGTGA
Protein sequence (LotjaGi6g1v0177100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGVLLWVNCGTKGNSISLLGLGGRGSRSQRRYRLCSGISFASFSSAVAEPSRSSEERVYEVVLKQAALVKEQKRDTKRK LNLDKPIEDDFTNKDLLSGAYDRCGEVCAEYAKTFYLGTQLMTEERRKAIWAIYVWCRRTDELVDGPNSPHITPKALDRW EQRLSDVFEGRPYDMYDAALSDTVTKYPVDIQPFKDMIEGMRLDLRKSRYNNFDELYLYCYYVAGTVGLMSVPVMGIAPE SKASAESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAKAGLSDEDIFSGRVTDKWRNFMKGQIRRARMFFDE AEKGVSELSSASRWPVWASLLLYRQILDSIEANDYNNFTKRAYVGKAKKLLSLPAAYGRAILGPQMLTKMVAR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 215 | 215 | - | – | |
| PANTHER | 32 | 389 | 358 | 1.1E-224 | – | |
| PANTHER | 32 | 389 | 358 | 1.1E-224 | – | |
| Gene3D | 89 | 373 | 285 | 1.7E-102 | ||
| SFLD | 99 | 379 | 281 | 0.0 | – | |
| SFLD | 99 | 379 | 281 | 0.0 | ||
| SUPERFAMILY | 100 | 381 | 282 | 3.36E-92 | ||
| CDD | 102 | 369 | 268 | 1.08793E-111 | ||
| Pfam | 111 | 366 | 256 | 7.7E-72 | – | |
| Phobius | 216 | 238 | 23 | - | – | |
| ProSitePatterns | 219 | 234 | 16 | - | ||
| Phobius | 239 | 393 | 155 | - | – | |
| ProSitePatterns | 255 | 280 | 26 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Farnesyl-diphosphate farnesyltransferase activity | Catalysis of the reaction: 2 farnesyl diphosphate = diphosphate + presqualene diphosphate. | ||
| Biological process | Biosynthetic process | The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. | ||
| Molecular function | Transferase activity | Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. | ||
| Molecular function | Transferase activity, transferring alkyl or aryl (other than methyl) groups | Catalysis of the transfer of an alkyl or aryl (but not methyl) group from one compound (donor) to another (acceptor). | ||
| Molecular function | Squalene synthase activity | Catalysis of the reaction: presqualene diphosphate + NADPH = squalene + NADP+ + diphosphate. |
Expression pattern of LotjaGi6g1v0177100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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