Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0180000 |
| Transcript ID | LotjaGi6g1v0180000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-binding ABC transporter; TAIR: AT5G19410.1 ABC-2 type transporter family protein; Swiss-Prot: sp|Q3E9B8|AB23G_ARATH ABC transporter G family member 23; TrEMBL-Plants: tr|A0A1J7HVN7|A0A1J7HVN7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0180000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:47166600..47168915) extracted from Lotus japonicus Gifu genome v1.2.
CACAGAATAATCAAAACCACACAATGGAAGCTTGCTTGAAACCTTCCATTAATGAAGATGACTCTGTAATACTCTTTTCC ACTTCTAACTCTCCTGAAGAGTCCACTAGTCCTTCTTCTTCTTTCTACCATTCACCACCACCTGCACTGCATCATTTCAA AACAGCACACAAACTTTATGTCAGAAACCTCTCCTACACTTTGCACCCACAAAAGAACACTCCCTTTTCGTTCTGTCACC TGACTCAAAAACCCAAGCCTGTAAACATACTCAAGTCTGTGTCTTTTGTGGCCAGAAGTTCTGAGATTGTTGCTGTTGTT GGTCCTAGTGGCACAGGGAAGTCTACTCTTCTTCGAATCATTGCCGGGCGGGTGAAAGACAGAGATTTTGATCCTAAAAC TATCTCAATCAATGATCATCCAATGACCAGTCCTGCCCAGTTGAGGAAGATATGTGGCTTTGTGGCCCAGGAAGACAATT TGCTTCCTCTGCTAACTGTGAAGGAAACTTTGCTGTTCAGTGCCAAGTTTAGGCTAAAAGAAATGACACCAAATGATAGA GAAATGAGGGTGGAAAGCTTGATGCAAGAGCTAGGCCTTTTTCATGTTTCAGATAGTTTTGTTGGGGATGAAGAGAATAG AGGGATATCTGGTGGGGAGAGAAAGAGGGTATCAATTGGAGTTGACATGATTCATAATCCTCCAATTTTGCTTCTAGATG AACCAACATCAGGCCTAGACAGCACTTCAGCTCTGCATGTGATAGAGCTTCTGTCTTCAATGGTCAAACAAAGGCAAAGG ACAGTGGTCCTATCAATCCACCAACCTAGCTATAGAATTTTGCAGTACATTTCTAAGTTCTTGATCCTCTCTCATGGTTC AGTTGTTCACAATGGTAGCCTAGAATCACTAGAGGAAACCATAACTAAATTGGGGTTTCAAATTCCTATACAACTGAATG CTTTAGAATTTTCCATGGAAATTATCCGCAGGTTAGAAGATTCCACTTCCAAATTTGACACTTACACCATTGAGGAAAAT GAGCTTTTTCCAAACCCTTTATGGCCAGAGGAAGAAAACAGTAGAGTCCAATATTATACAGAAAGTTTTGGCAAACATTG CTATGCATACTTGATGGAGACACTATTTCTCTGCTCAAGATTTTGGAAGATCATTTACAGAACAAAACAGCTTTTCCTGG CCAGAACATTGCAAGCACTAGTTGGTGGATTTGGGCTAGCAAGTGTTTACATAAAGGTTAGAAAAGATGAAGAAGGAATT GCAGAAAGGTTAGGCTTGTTTGCATTTAGTCTCAGTTTTCTCCTGTCTTCTACAGTGGAAGCACTTCCAATATACCTTCA AGAGAGAAGTGTTTTGATGAAAGAAGCCTCAAGGGGAGCCTATAGAATTTCCTCTTACATGATAGCCAACACTCTTGTTT TTCTCCCTTTCTTGTTTGTAGTGTCTATACTTTTTGCAGTTCCTGTGTATTGGATTGTAGGACTCAATCCTTCCCTTTCA GCCTTCACCTTCTTCACTTTTGTGGTTTGGCTCATTGTGCTCATGGCAAGTTCTCTAGTACTCTTTTTGAGTGCAGTCTC TCCTGATTTCATTTCAGGGAATTCTCTCATCTGCACTGTTCTTGGAGCCTTCTTCCTCTTCTCTGGATACTTCATCCCAA AAGAGAGCATTCCAAAATATTGGCTATTCATGTATTATGTGTCCCTCTATAGGTACCCTTTGGATGCACTACTCACAAAT GAGTATTGGAATGTTAGAACTGAGTGTTTCTCTGAACAAACAGAGAATGCTCATTGTTTGATTACCGGCTTTGATGTGTT GAAGAGTAGAGGGCTTGAAAAAGATCATAGGTGGATGAATGTAGGGATCATGCTTGGATTTTTTGTGTTCTATCGTGTGC TTTGTTGGATTATACTTGCTAGAAAAGCCTCCAAGACAACAATATAATAAGAGTACCAAAGCTACATCATTAGTCATTAC TCCAGAACAAAATGAAGGTCTTCAAATATATGTTTTACGTTCATTACAATTCATATTAAGAAGAGGCTTGTTCCATGTGT AGTGCACATATAACAAAACAAGCCTTTTACTCAACCAATCACTTTCAAATTTCAACCATTATAGTTTTCTTTAATTCAGT GCAATTTATTAAATTTTGTGATATTTTAATCATCATGTTATTTTTTTATCATTTAATTTCTCATTTTCTTACGATTAAAC TGGAATATCATTGAGCTGAAGTTAAGCGGTGCAAAAAATTTAGCTTCTGAATTTGGTAAATCTTGGAAGTTTTGGA
CDS sequence (LotjaGi6g1v0180000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGCTTGCTTGAAACCTTCCATTAATGAAGATGACTCTGTAATACTCTTTTCCACTTCTAACTCTCCTGAAGAGTC CACTAGTCCTTCTTCTTCTTTCTACCATTCACCACCACCTGCACTGCATCATTTCAAAACAGCACACAAACTTTATGTCA GAAACCTCTCCTACACTTTGCACCCACAAAAGAACACTCCCTTTTCGTTCTGTCACCTGACTCAAAAACCCAAGCCTGTA AACATACTCAAGTCTGTGTCTTTTGTGGCCAGAAGTTCTGAGATTGTTGCTGTTGTTGGTCCTAGTGGCACAGGGAAGTC TACTCTTCTTCGAATCATTGCCGGGCGGGTGAAAGACAGAGATTTTGATCCTAAAACTATCTCAATCAATGATCATCCAA TGACCAGTCCTGCCCAGTTGAGGAAGATATGTGGCTTTGTGGCCCAGGAAGACAATTTGCTTCCTCTGCTAACTGTGAAG GAAACTTTGCTGTTCAGTGCCAAGTTTAGGCTAAAAGAAATGACACCAAATGATAGAGAAATGAGGGTGGAAAGCTTGAT GCAAGAGCTAGGCCTTTTTCATGTTTCAGATAGTTTTGTTGGGGATGAAGAGAATAGAGGGATATCTGGTGGGGAGAGAA AGAGGGTATCAATTGGAGTTGACATGATTCATAATCCTCCAATTTTGCTTCTAGATGAACCAACATCAGGCCTAGACAGC ACTTCAGCTCTGCATGTGATAGAGCTTCTGTCTTCAATGGTCAAACAAAGGCAAAGGACAGTGGTCCTATCAATCCACCA ACCTAGCTATAGAATTTTGCAGTACATTTCTAAGTTCTTGATCCTCTCTCATGGTTCAGTTGTTCACAATGGTAGCCTAG AATCACTAGAGGAAACCATAACTAAATTGGGGTTTCAAATTCCTATACAACTGAATGCTTTAGAATTTTCCATGGAAATT ATCCGCAGGTTAGAAGATTCCACTTCCAAATTTGACACTTACACCATTGAGGAAAATGAGCTTTTTCCAAACCCTTTATG GCCAGAGGAAGAAAACAGTAGAGTCCAATATTATACAGAAAGTTTTGGCAAACATTGCTATGCATACTTGATGGAGACAC TATTTCTCTGCTCAAGATTTTGGAAGATCATTTACAGAACAAAACAGCTTTTCCTGGCCAGAACATTGCAAGCACTAGTT GGTGGATTTGGGCTAGCAAGTGTTTACATAAAGGTTAGAAAAGATGAAGAAGGAATTGCAGAAAGGTTAGGCTTGTTTGC ATTTAGTCTCAGTTTTCTCCTGTCTTCTACAGTGGAAGCACTTCCAATATACCTTCAAGAGAGAAGTGTTTTGATGAAAG AAGCCTCAAGGGGAGCCTATAGAATTTCCTCTTACATGATAGCCAACACTCTTGTTTTTCTCCCTTTCTTGTTTGTAGTG TCTATACTTTTTGCAGTTCCTGTGTATTGGATTGTAGGACTCAATCCTTCCCTTTCAGCCTTCACCTTCTTCACTTTTGT GGTTTGGCTCATTGTGCTCATGGCAAGTTCTCTAGTACTCTTTTTGAGTGCAGTCTCTCCTGATTTCATTTCAGGGAATT CTCTCATCTGCACTGTTCTTGGAGCCTTCTTCCTCTTCTCTGGATACTTCATCCCAAAAGAGAGCATTCCAAAATATTGG CTATTCATGTATTATGTGTCCCTCTATAGGTACCCTTTGGATGCACTACTCACAAATGAGTATTGGAATGTTAGAACTGA GTGTTTCTCTGAACAAACAGAGAATGCTCATTGTTTGATTACCGGCTTTGATGTGTTGAAGAGTAGAGGGCTTGAAAAAG ATCATAGGTGGATGAATGTAGGGATCATGCTTGGATTTTTTGTGTTCTATCGTGTGCTTTGTTGGATTATACTTGCTAGA AAAGCCTCCAAGACAACAATATAA
Protein sequence (LotjaGi6g1v0180000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEACLKPSINEDDSVILFSTSNSPEESTSPSSSFYHSPPPALHHFKTAHKLYVRNLSYTLHPQKNTPFSFCHLTQKPKPV NILKSVSFVARSSEIVAVVGPSGTGKSTLLRIIAGRVKDRDFDPKTISINDHPMTSPAQLRKICGFVAQEDNLLPLLTVK ETLLFSAKFRLKEMTPNDREMRVESLMQELGLFHVSDSFVGDEENRGISGGERKRVSIGVDMIHNPPILLLDEPTSGLDS TSALHVIELLSSMVKQRQRTVVLSIHQPSYRILQYISKFLILSHGSVVHNGSLESLEETITKLGFQIPIQLNALEFSMEI IRRLEDSTSKFDTYTIEENELFPNPLWPEEENSRVQYYTESFGKHCYAYLMETLFLCSRFWKIIYRTKQLFLARTLQALV GGFGLASVYIKVRKDEEGIAERLGLFAFSLSFLLSSTVEALPIYLQERSVLMKEASRGAYRISSYMIANTLVFLPFLFVV SILFAVPVYWIVGLNPSLSAFTFFTFVVWLIVLMASSLVLFLSAVSPDFISGNSLICTVLGAFFLFSGYFIPKESIPKYW LFMYYVSLYRYPLDALLTNEYWNVRTECFSEQTENAHCLITGFDVLKSRGLEKDHRWMNVGIMLGFFVFYRVLCWIILAR KASKTTI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 366 | 366 | - | – | |
| PANTHER | 46 | 641 | 596 | 6.4E-204 | – | |
| PANTHER | 46 | 641 | 596 | 6.4E-204 | – | |
| ProSiteProfiles | 51 | 309 | 259 | 20.722 | ||
| Gene3D | 68 | 324 | 257 | 9.2E-54 | – | |
| SUPERFAMILY | 70 | 300 | 231 | 1.14E-44 | ||
| Pfam | 83 | 236 | 154 | 4.3E-27 | ||
| SMART | 92 | 294 | 203 | 5.4E-11 | ||
| ProSitePatterns | 208 | 222 | 15 | - | ||
| Phobius | 367 | 384 | 18 | - | – | |
| Pfam | 375 | 581 | 207 | 8.2E-42 | ||
| Phobius | 385 | 390 | 6 | - | – | |
| CDD | 389 | 548 | 160 | 0.00307834 | – | |
| TMHMM | 390 | 412 | 23 | - | – | |
| Phobius | 391 | 410 | 20 | - | – | |
| Phobius | 411 | 421 | 11 | - | – | |
| Phobius | 422 | 445 | 24 | - | – | |
| Phobius | 446 | 465 | 20 | - | – | |
| Phobius | 466 | 492 | 27 | - | – | |
| TMHMM | 471 | 493 | 23 | - | – | |
| Phobius | 493 | 497 | 5 | - | – | |
| Phobius | 498 | 522 | 25 | - | – | |
| TMHMM | 503 | 522 | 20 | - | – | |
| Phobius | 523 | 528 | 6 | - | – | |
| Phobius | 529 | 551 | 23 | - | – | |
| TMHMM | 529 | 551 | 23 | - | – | |
| Phobius | 552 | 616 | 65 | - | – | |
| Phobius | 617 | 638 | 22 | - | – | |
| TMHMM | 617 | 639 | 23 | - | – | |
| Phobius | 639 | 647 | 9 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. |
Expression pattern of LotjaGi6g1v0180000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…