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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0182000 |
| Transcript ID | LotjaGi6g1v0182000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pre-mRNA-splicing factor CWC22; TAIR: AT1G80930.1 MIF4G domain-containing protein / MA3 domain-containing protein; Swiss-Prot: sp|Q9VJ87|CWC22_DROME Pre-mRNA-splicing factor CWC22 homolog; TrEMBL-Plants: tr|A0A0L9VAV7|A0A0L9VAV7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0182000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:47421348..47426340) extracted from Lotus japonicus Gifu genome v1.2.
CTCTATTAAATAAATTTGAGTGCATATTCCTCTCTCTCTACTAAATTTAAATCTCAAAATTTCCCGAGCTCGACCCAAAA TCCCTATTCTGCTTCCCCCAAACTCCACCCATTCCTCCTCTCTTCACCATCTACACCGCCCTACTATCAATTCCGCCGCC GTTCCTCTCCACTATCTTTGCCACTTCAGCCGCCATATCTCTTCGCGTCTCTCTGTTCTTACGCTCTTCCAATTCAATCG AATTAGGGTTTTGTCTTCGAATCGCCATGGCGCCCACCAGGGAATCCAGTGAAGAGAGAGATAGCAGGCACAAAAGGAAG AGTTCCAGTCACCGCCACCGCAGGGATTACAGTGACGGCAGTGAATCTGAAGAAGGGAAAAGGAAGAGAAGTAAACACAG GGAGCAATCTGAGAGTTCCGAGGAGGAGGGTCAGATTCACGATCGACGCGGACGGAGAGAACCACAAGAAGAACAAGACG GGCGTAGGGAGTCTCGTAGTAGAAGGTACGACGAGGATGACTGCAAGCGGGGTCGCCAGAGAGAGGACGAGGAGGAGGAG GACCGTCGCAGAGGGAAGGATCGGCGGGATAGGGTTAAGAATGACAGTGGGGGAGAGAGGGAGAAGGTTGAGAAAGAAGA GGGTGAGAGAGTTCGTATAACTCATGATCGACGAGGAGGACGGAGAGAAGCAGAGGAAGATGGGCGCAGGGAAGCTAGGA GAAGGTATGATGAGGAGGATGAGAAGCGTACCCGAAGGCGGGGAGAGGAGGAGGACCGGCGTAGGGGCAAGGATCGCCGG GGACGTCGCGGTGATTCGGAAGAGGAAGAGGATAGTAGGAAGAGGGACTCTAGGGTTAATAACAATATTGATAGTGGGAG AGATAGGCAGAGGGGTGGTAGGGAAGATCGGAAGGATGGGCATGGGAAAACGGCGATGAATCCGGAAGGTGATGTGAATG GGGCTGCTTCGAACTTGGGCAAGAGTGGGGGTGTTTACATTCCTCCTTTTAAGCTGGCTAGGATGATGAAGGAGGTTGAG GATAAGAGTAGTCCTGAGTATCAGAGGCTAACTTGGGATGCTTTGCGAAAGAGCATTAATGGGTTGGTCAACAAGGTTAA TGCTACTAACATCAAGAACATCATTCCGGAGCTGCTATCTGAGAATTTGATCAGGGGAAGGGGACTCTTCTGCCGGTCGT GTATGAAGTCTCAGATGGCGTCACCCGGGTTTACTGATGTCTTTGCTGCATTGGTTGCTGTAGTGAATACTAAGTTTCCT GAGGTGGGGGAGCTTTTGCTCAAAAGGCTTGTCTTGCAGCTCAAGAGAGCTTATAAAAGGAATGACAAGGTATTTGATGT GATGTGATGTGATTTGTTCCTTTTTTCTTGGATCAATTAATGTTATTCCTGCTTCTAACTGTGTTTTTTTAATTCGTTTG TAGCCTCAATTGCTAGCTGCTGTTAAGTTTGTAGCACATCTAGTGAATCAGCAAGTGGCTCATGAGATCATTGCTCTAGA GTTGCTCACGGTTTTGCTCGAGAAGCCTACCGATGACAGTGTTGAAGTAGCTGTTGGTTTTGTCACGGAATGTGGTTCAA TACTGCAGGAGCTCTCACCTAAAGGCCTTCATGGTGAGTATTCCCTTGAACTATATGGTAGTAGTGTGCATAGGTTGTTT TTTATTTGTAAATATGATCACTTCTTGTTACATTATGAATATGGTATTCACTGCTTTATGAAAGCATAGTAAAGCTAGGT AAATGATTTGATTGCACATTACCTCCTTCTCTGTTAGAGAGGGGAAGATCGGAATCGAGTGTTAAATGGTTCCAGGTGTA TGAAATTGTATTAGTGTTTGAGAGGGGATTAGTTTCAAAGAAACAAGGTAGATCAGAGTTCAGAGATGAGTTAAAGACAT GTTTGAAGATATTTGGTTTGTCAGAAAAAAGAATGAAATTTAATCTGTTTGGGTGCATGAGCCCCTTATTGACAGGGTCT GGGTGTGTGGCATGTAACTCTTATTTAAAAAGTATTGAACTTTTATGTTTATAATTTATGACTAAAAAGTAAAAACTCCA TGTGAACTTCTGTTATTTATTTTGTAATTTGATATTGAGAAGTAAGTTTATCTATAAGTTATACTGCCCAAACATAAACC ATTGTGTATGTGGTCTGATATGTTCAGGGTCTGGTATTTTGTTTTTATACTTTTATTCTCTTCTGTTAATGTTTTCTTAT TCTTTTTTAGGGAGGATCTCTTATCCTCCAATTTCTCTATATAATCTTCTATTTTAATGTATTTCTTCTCGTCTAAAAAT TATGTATCTAATTATTACTCCACCTAAGTAAGTGTATCCACTCACTCTGCTGGTTTGTACATTTTATTCCCTGCATGCGT GCAGAACTATGCCAGTGTGTTACACTTAAGTACATTTGCAGATAATATTTGAGATAACTTTCAGTCTTGGATATTTTTGT TTAATAGTTAGAACTTTGCAGGTATCTTTGAGCGTTTTCGTGGAATTCTTCATGAAGGAGAAATTGACAAACGTGTGCAG TTCTTGATTGAAGGTTTATTTGCAGTTAGAAAAGCCAAGTTTCAGGTATGATTTTCTTTTGCTGAGAATGCCAACTCTAT TGTAAAACTGTTAAATTGAATAGGTTGAAATTAAAATGCTTAATTTTTTATTGCATTTACAGGGCTATCCAGCTGTTCGG CCTGAACTAGACCTTGTGGAGCTGGAAGATCAGTTAACTCATGAAGTCTCTTTAGATGAGGCCATAGATCCAGATACTTC CCTTGGTACATTTTTTTTTGTTAAGTTTATACTTGTATCAAATTCGATCGACTTGCAGTGATGTGTGATTCTAATTTTGA TTTTTTTCATTTTAATTTTCCGCAGATATATTCAAAGTTGATCCCAATTATATGGAGAACGAGAAGCGTTATGAAGAGTT AAAGAAAACAATACTGGGCGAGGAATCTGATGATGACGAAGGCTCTGATGCTGATGCTGATGCTGATGCTGATTCAGAGG CAGATGAAGATGATGAATCAGATGATGAGGATGAAGAAAGTATGCAAATACAAGATGAAACGGAGACAAATTTGGTCAAT CTACGCAGGACAATTTATTTAACAATAATGTCCAGCGTAGATTTTGAGGAAGCTGGTCATAAGCTTCTCAAAATTCATCT AGAGCCTGGTCAAGAGGTGAGCTTGTAATCTACACTGGTAGTTTCCGTTTGCCATAACTATCTGCTTGCTAAAATAAAAT TTAACAACAATGTTGTGTGATTGATGGCAGATGGAATTATGCATCATGCTTTTGGAATGTTGCAGCCAAGAGAGAACTTA CCTGCGGTATTATGGTCTTCTTGGACAGCGTTTCTGTGTGATCAACAAAGTACATCAAGAAAATTTTGAGAAGTGCTTTG TGCAGCAGTACTCAATGATTCATCGACTTGAAACAAATAAACTGCGAAATGTGGCAAAGTTTTTTGCTCATTTGCTTGGC ACGGATGCTCTACCTTGGCATGTGTTATCGTATATTCGCTTGACTGAGGAAGACACAACTTCTTCATCTCGTATATTTAT TAAGATACTCTTCCAGGTATTGTGAATTAAACTCAAAATTCTCATTTTTGTTTCTCTAGTACTTGCTTTATTATTTCAAC TAGTTTGAGTTACCAGTCGTAGAAGCTTACAGCTGAGGCAAACACATTTTTTGTGGGGGGGAGAGGGGATCAAATAAATG TTAATCCAACCAAACTCTTATTTTTTGTAGTGTGTACAATGCAGTTTTCTTTTGACAAAGAATAAACTCTCTTTTTTTTT TACGTTGACAATGAAAAAATTCATGAACTTGCAATTTTCTTGTGTGCGGCCATTATTGATATTTCCACTTTATCTTTATA TAAGGTGATTTTTAATGAGAATTTATTCTAGCTTTTTTTTCCTGATATCATCTTGGGGGAGTACTAGTAATACCTGCTTA CCTCTTTGTGTGGAAGATGTTGATTTCACTTTACAATGCTGCAGGAATTATCAGAGCATCTTGGCATCAAGCTTCTTAAT GAAAGGCTGAATGATCCAACAATGCAGGACTCTTTTGAATGCATATTTCCTAAAGATAACCCGAAAAACACAAGGTTCTG CATTAACTTCTTCACATCGATTGGTCTCGGTGGTCTTACTGAGAACCTCCGTGAGTATTTGAAGAATATGCCACGCCTTA TCATGCAACAACAGAAACAAGTTTCAGAATCTGAATCAGAGGATGAGTCTGGGAGTTCTGATTCATCAGACTCGGGAACA GATAGTTCTGAGTCAGAGTCAGAAAGTGATCGTGAACAACGAAGAAAACGGAGGAGAAAGTAGAAAATGTTTTTAGTCTT CTGGGCTCTTTCTGGTCTGTATTCAACTGTTTTCCTAGTAAGCTGAGTGATTTTGATGTCATCATAAGAAAGATTTACAC AGAACTATGTTAGTTAATGGCTTATTGTTGTAAATGTGAAGTGCATAGCTCTCGGCTTTGGTTGAATTTTGGTATTTGAG TTAGTTAATTGAAGTTCTTGATTTGCTTTGGTTGATTTTACAATGAGAAGGAAATTATCTTGAATTAATTTGATTTTTGG ATATTAGATTCCAGATGAATGTGAATGCGTTGCTCTCGGGTTCTTGATGAAAATATTTTTGAAAATACATTGCTGTGTAG TCTTTTGGTCAAGCTCAGCTGAAGAGACTGAAAAAGATCTTTATCTGATTCCTCGGGTCATAAGGTTATATCTCCTATGA GTAAAACAGAAGATTGATGATATACTAGTTGTGAAGACTTTTGAGGAACCATACTTTGAGGAAGTATTGACATGTGTCAC AAATAACTAATCTTCGGATGTTGGTAGGGGATGTTATTAGAGATGTGGGAATGCACCAATATTATTTGTGCATAAGAAAC CAAATTTTCAGATTTTATTTTATTTTTGTGTAG
CDS sequence (LotjaGi6g1v0182000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGCCCACCAGGGAATCCAGTGAAGAGAGAGATAGCAGGCACAAAAGGAAGAGTTCCAGTCACCGCCACCGCAGGGA TTACAGTGACGGCAGTGAATCTGAAGAAGGGAAAAGGAAGAGAAGTAAACACAGGGAGCAATCTGAGAGTTCCGAGGAGG AGGGTCAGATTCACGATCGACGCGGACGGAGAGAACCACAAGAAGAACAAGACGGGCGTAGGGAGTCTCGTAGTAGAAGG TACGACGAGGATGACTGCAAGCGGGGTCGCCAGAGAGAGGACGAGGAGGAGGAGGACCGTCGCAGAGGGAAGGATCGGCG GGATAGGGTTAAGAATGACAGTGGGGGAGAGAGGGAGAAGGTTGAGAAAGAAGAGGGTGAGAGAGTTCGTATAACTCATG ATCGACGAGGAGGACGGAGAGAAGCAGAGGAAGATGGGCGCAGGGAAGCTAGGAGAAGGTATGATGAGGAGGATGAGAAG CGTACCCGAAGGCGGGGAGAGGAGGAGGACCGGCGTAGGGGCAAGGATCGCCGGGGACGTCGCGGTGATTCGGAAGAGGA AGAGGATAGTAGGAAGAGGGACTCTAGGGTTAATAACAATATTGATAGTGGGAGAGATAGGCAGAGGGGTGGTAGGGAAG ATCGGAAGGATGGGCATGGGAAAACGGCGATGAATCCGGAAGGTGATGTGAATGGGGCTGCTTCGAACTTGGGCAAGAGT GGGGGTGTTTACATTCCTCCTTTTAAGCTGGCTAGGATGATGAAGGAGGTTGAGGATAAGAGTAGTCCTGAGTATCAGAG GCTAACTTGGGATGCTTTGCGAAAGAGCATTAATGGGTTGGTCAACAAGGTTAATGCTACTAACATCAAGAACATCATTC CGGAGCTGCTATCTGAGAATTTGATCAGGGGAAGGGGACTCTTCTGCCGGTCGTGTATGAAGTCTCAGATGGCGTCACCC GGGTTTACTGATGTCTTTGCTGCATTGGTTGCTGTAGTGAATACTAAGTTTCCTGAGGTGGGGGAGCTTTTGCTCAAAAG GCTTGTCTTGCAGCTCAAGAGAGCTTATAAAAGGAATGACAAGCCTCAATTGCTAGCTGCTGTTAAGTTTGTAGCACATC TAGTGAATCAGCAAGTGGCTCATGAGATCATTGCTCTAGAGTTGCTCACGGTTTTGCTCGAGAAGCCTACCGATGACAGT GTTGAAGTAGCTGTTGGTTTTGTCACGGAATGTGGTTCAATACTGCAGGAGCTCTCACCTAAAGGCCTTCATGGTATCTT TGAGCGTTTTCGTGGAATTCTTCATGAAGGAGAAATTGACAAACGTGTGCAGTTCTTGATTGAAGGTTTATTTGCAGTTA GAAAAGCCAAGTTTCAGGGCTATCCAGCTGTTCGGCCTGAACTAGACCTTGTGGAGCTGGAAGATCAGTTAACTCATGAA GTCTCTTTAGATGAGGCCATAGATCCAGATACTTCCCTTGATATATTCAAAGTTGATCCCAATTATATGGAGAACGAGAA GCGTTATGAAGAGTTAAAGAAAACAATACTGGGCGAGGAATCTGATGATGACGAAGGCTCTGATGCTGATGCTGATGCTG ATGCTGATTCAGAGGCAGATGAAGATGATGAATCAGATGATGAGGATGAAGAAAGTATGCAAATACAAGATGAAACGGAG ACAAATTTGGTCAATCTACGCAGGACAATTTATTTAACAATAATGTCCAGCGTAGATTTTGAGGAAGCTGGTCATAAGCT TCTCAAAATTCATCTAGAGCCTGGTCAAGAGATGGAATTATGCATCATGCTTTTGGAATGTTGCAGCCAAGAGAGAACTT ACCTGCGGTATTATGGTCTTCTTGGACAGCGTTTCTGTGTGATCAACAAAGTACATCAAGAAAATTTTGAGAAGTGCTTT GTGCAGCAGTACTCAATGATTCATCGACTTGAAACAAATAAACTGCGAAATGTGGCAAAGTTTTTTGCTCATTTGCTTGG CACGGATGCTCTACCTTGGCATGTGTTATCGTATATTCGCTTGACTGAGGAAGACACAACTTCTTCATCTCGTATATTTA TTAAGATACTCTTCCAGGAATTATCAGAGCATCTTGGCATCAAGCTTCTTAATGAAAGGCTGAATGATCCAACAATGCAG GACTCTTTTGAATGCATATTTCCTAAAGATAACCCGAAAAACACAAGGTTCTGCATTAACTTCTTCACATCGATTGGTCT CGGTGGTCTTACTGAGAACCTCCGTGAGTATTTGAAGAATATGCCACGCCTTATCATGCAACAACAGAAACAAGTTTCAG AATCTGAATCAGAGGATGAGTCTGGGAGTTCTGATTCATCAGACTCGGGAACAGATAGTTCTGAGTCAGAGTCAGAAAGT GATCGTGAACAACGAAGAAAACGGAGGAGAAAGTAG
Protein sequence (LotjaGi6g1v0182000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPTRESSEERDSRHKRKSSSHRHRRDYSDGSESEEGKRKRSKHREQSESSEEEGQIHDRRGRREPQEEQDGRRESRSRR YDEDDCKRGRQREDEEEEDRRRGKDRRDRVKNDSGGEREKVEKEEGERVRITHDRRGGRREAEEDGRREARRRYDEEDEK RTRRRGEEEDRRRGKDRRGRRGDSEEEEDSRKRDSRVNNNIDSGRDRQRGGREDRKDGHGKTAMNPEGDVNGAASNLGKS GGVYIPPFKLARMMKEVEDKSSPEYQRLTWDALRKSINGLVNKVNATNIKNIIPELLSENLIRGRGLFCRSCMKSQMASP GFTDVFAALVAVVNTKFPEVGELLLKRLVLQLKRAYKRNDKPQLLAAVKFVAHLVNQQVAHEIIALELLTVLLEKPTDDS VEVAVGFVTECGSILQELSPKGLHGIFERFRGILHEGEIDKRVQFLIEGLFAVRKAKFQGYPAVRPELDLVELEDQLTHE VSLDEAIDPDTSLDIFKVDPNYMENEKRYEELKKTILGEESDDDEGSDADADADADSEADEDDESDDEDEESMQIQDETE TNLVNLRRTIYLTIMSSVDFEEAGHKLLKIHLEPGQEMELCIMLLECCSQERTYLRYYGLLGQRFCVINKVHQENFEKCF VQQYSMIHRLETNKLRNVAKFFAHLLGTDALPWHVLSYIRLTEEDTTSSSRIFIKILFQELSEHLGIKLLNERLNDPTMQ DSFECIFPKDNPKNTRFCINFFTSIGLGGLTENLREYLKNMPRLIMQQQKQVSESESEDESGSSDSSDSGTDSSESESES DREQRRKRRRK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 235 | 235 | - | – | |
| MobiDBLite | 1 | 16 | 16 | - | – | |
| MobiDBLite | 24 | 223 | 200 | - | – | |
| Coils | 140 | 160 | 21 | - | – | |
| Gene3D | 231 | 517 | 287 | 1.2E-92 | ||
| PANTHER | 250 | 810 | 561 | 0.0 | – | |
| PANTHER | 250 | 810 | 561 | 0.0 | – | |
| SUPERFAMILY | 262 | 505 | 244 | 2.25E-69 | ||
| SMART | 274 | 457 | 184 | 4.1E-39 | ||
| MobiDBLite | 518 | 559 | 42 | - | – | |
| MobiDBLite | 521 | 556 | 36 | - | – | |
| ProSiteProfiles | 565 | 681 | 117 | 24.33 | ||
| SMART | 566 | 672 | 107 | 1.3E-37 | ||
| Pfam | 566 | 672 | 107 | 2.5E-30 | ||
| MobiDBLite | 767 | 811 | 45 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0182000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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