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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0190800 |
| Transcript ID | LotjaGi6g1v0190800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SNF2 domain-containing protein / helicase domain-containing protein; TAIR: AT2G16390.2 SNF2 domain-containing protein / helicase domain-containing protein; Swiss-Prot: sp|Q9SIW2|CHR35_ARATH Protein CHROMATIN REMODELING 35; TrEMBL-Plants: tr|A0A0B2QHR2|A0A0B2QHR2_GLYSO DNA repair protein rhp54; Found in the gene: LotjaGi6g1v0190800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:48672719..48674754) extracted from Lotus japonicus Gifu genome v1.2.
CCTTTTTTTATTGAAGGTTAAAATCAGCAGCACTATGTCTAGAACTTACAAGGCTGATTCATGGACCAAAGCAAAAGCTG ATGTATGTGCAATTAAGATTGCTGAAGATGACATCATGTTAACTGACATCTCAGCACATCCTAGGCATATGAAACAAATG AAGTCTCATCAAATAGAAGGATTCAATTTTCTCGTCAGAAACCTTGTAGGTGACAATCCTGGGGGCTGCATCTTGGCCCA TGCTCCAGGTTCTGGGAAGACATTCATGATAATCAGTTTCATGCAAAGTTTTCTAGGCAAGTACCCAAATGCTAGACCTC TAGTGGTGCTTCCTAAGGGAATACTATCTACATGGAAAAAGGAGTTTCAGACATGGCAAGTGGAGGACATACCACTTTAC GATTTTTACACTGTGAAGGCAGACAGTAGATCTCAGAAGTTGGAAGTTTTGAAACAATGGGTTGAACATAAGAGCATCCT TTTCTTGGGGTACAAGCAGTTCTCTTCAATTGTATGTGATAATAGTATGGACAGCGTATCAATATCTTGCCAAGATATAT TACTGAAGGTACCTTCAATTCTCATTTTAGATGAAGGACATAACCCACGGAATGAAAACACCAATATGGTGCACTCCCTT GCGAAAGTAAAAACACAGAGAAAAGTTGTACTGTCAGGAACTTTGTATCAAAACCATGTCAAGGAGGTATTTAATATCTT GAATCTCGTACGACCAAAGTTTCTAAAGATGGAAACATCTAGGCCTATTGTCAAGCGCATTCATAGTAGAGTACATATAC CGGGCAAAAAAACTTTCTTTGATTTGGTTGAGGACACTTTGCAGAAGGACCCTGATTTTAAAAGGAAAATAGCTGTTATA CAAGATTTGCGTGAAATGACGAGCAAGGTACTTCACTATTATAAAGGAGATTTTCTTGATGAGCTTCCTGGTCTGGTTGA TTTTACAGTGATACTTAACCTTACCCCAAGACAGAAGCATGAAATAGAGAAATTAAAGAATATATCTAGAAAGTTCAAGG TATCTTCTCTGGGCAGTGCACTTTATCTTCACCCTAGATTGAAACCTGTTGTGGAAGAATGTAGTGAAAATTGTGTATCT GATCAAATGGTGGATGATTTAATAGAGAAATTGGATGTGAAAGATGGTGTGAAGTCGAAATTCTTCCTGAACATTCTAAA CTTGTGTGAATCATCTGGGGAGAAGCTTCTGGTGTTCAGTCAATATCTCTTACCTTTGAAATACTTGGAAAGGTTGACTT GGAAACGGAAAGGTTGGTGTGTTGGGAAAGAAATCTTTGGAATCTCAGGGGAATCTAGCTCTGAGCAAAGGGAGTGGGCA ATGGAAAGATTTAACAATTCACCTGATGCCAAAGTCTTCTTTGGCTCAATCAAGGCATGTGGAGAGGGCATATCCTTGGT TGGGGCATCCCGAGTACTTATTTTGGATGTTCATCTGAACCCGTCTGTTACTCGCCAAGCTATTGGTCGTGCATTCCGAC CAGGGCAGACAAAGAAAGTCTTTGTGTATCGGTTGATAGCAGCTGATTCTCCTGAAGAGGAAGATCACATTACTTCTTTC AAGAAGGAACTGATTTCAAAGATGTGGTTTGAGTGGAATGAGTATTGTGGTGATAGAGCCTTCCAAGTTGAGACTACTAG TGCCAAAGAATGTGGTGATTTGTTCCTTGCGAGTCCAATGTTAGGAGAAGACATAAAAGCTCTGTATAAAAGGTTTGAGA CCACTCTTCCTACATTTTTGCACATCATATAACAACCATGCCCTTCTTCTTTACTAATACTTGTTTTATTTGTATCTTTC AGGTAGATAGACTATTGGCATTCAGTGGAGTAGGAAAATGTTTACTGCATTTATGGTGCATAGTTTTATCATTGTATTTT GATACAGAACAAAGTAAAGAGTGGCCTAATTTAGTTTTCTTTGCTCTTTGTACACTTGTGATCTATCTTCCTCACTCTTG TGTGAGTGGAGAGATGTGCAGGGTATTAAATTTTCG
CDS sequence (LotjaGi6g1v0190800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTAGAACTTACAAGGCTGATTCATGGACCAAAGCAAAAGCTGATGTATGTGCAATTAAGATTGCTGAAGATGACAT CATGTTAACTGACATCTCAGCACATCCTAGGCATATGAAACAAATGAAGTCTCATCAAATAGAAGGATTCAATTTTCTCG TCAGAAACCTTGTAGGTGACAATCCTGGGGGCTGCATCTTGGCCCATGCTCCAGGTTCTGGGAAGACATTCATGATAATC AGTTTCATGCAAAGTTTTCTAGGCAAGTACCCAAATGCTAGACCTCTAGTGGTGCTTCCTAAGGGAATACTATCTACATG GAAAAAGGAGTTTCAGACATGGCAAGTGGAGGACATACCACTTTACGATTTTTACACTGTGAAGGCAGACAGTAGATCTC AGAAGTTGGAAGTTTTGAAACAATGGGTTGAACATAAGAGCATCCTTTTCTTGGGGTACAAGCAGTTCTCTTCAATTGTA TGTGATAATAGTATGGACAGCGTATCAATATCTTGCCAAGATATATTACTGAAGGTACCTTCAATTCTCATTTTAGATGA AGGACATAACCCACGGAATGAAAACACCAATATGGTGCACTCCCTTGCGAAAGTAAAAACACAGAGAAAAGTTGTACTGT CAGGAACTTTGTATCAAAACCATGTCAAGGAGGTATTTAATATCTTGAATCTCGTACGACCAAAGTTTCTAAAGATGGAA ACATCTAGGCCTATTGTCAAGCGCATTCATAGTAGAGTACATATACCGGGCAAAAAAACTTTCTTTGATTTGGTTGAGGA CACTTTGCAGAAGGACCCTGATTTTAAAAGGAAAATAGCTGTTATACAAGATTTGCGTGAAATGACGAGCAAGGTACTTC ACTATTATAAAGGAGATTTTCTTGATGAGCTTCCTGGTCTGGTTGATTTTACAGTGATACTTAACCTTACCCCAAGACAG AAGCATGAAATAGAGAAATTAAAGAATATATCTAGAAAGTTCAAGGTATCTTCTCTGGGCAGTGCACTTTATCTTCACCC TAGATTGAAACCTGTTGTGGAAGAATGTAGTGAAAATTGTGTATCTGATCAAATGGTGGATGATTTAATAGAGAAATTGG ATGTGAAAGATGGTGTGAAGTCGAAATTCTTCCTGAACATTCTAAACTTGTGTGAATCATCTGGGGAGAAGCTTCTGGTG TTCAGTCAATATCTCTTACCTTTGAAATACTTGGAAAGGTTGACTTGGAAACGGAAAGGTTGGTGTGTTGGGAAAGAAAT CTTTGGAATCTCAGGGGAATCTAGCTCTGAGCAAAGGGAGTGGGCAATGGAAAGATTTAACAATTCACCTGATGCCAAAG TCTTCTTTGGCTCAATCAAGGCATGTGGAGAGGGCATATCCTTGGTTGGGGCATCCCGAGTACTTATTTTGGATGTTCAT CTGAACCCGTCTGTTACTCGCCAAGCTATTGGTCGTGCATTCCGACCAGGGCAGACAAAGAAAGTCTTTGTGTATCGGTT GATAGCAGCTGATTCTCCTGAAGAGGAAGATCACATTACTTCTTTCAAGAAGGAACTGATTTCAAAGATGTGGTTTGAGT GGAATGAGTATTGTGGTGATAGAGCCTTCCAAGTTGAGACTACTAGTGCCAAAGAATGTGGTGATTTGTTCCTTGCGAGT CCAATGTTAGGAGAAGACATAAAAGCTCTGTATAAAAGGTTTGAGACCACTCTTCCTACATTTTTGCACATCATATAA
Protein sequence (LotjaGi6g1v0190800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRTYKADSWTKAKADVCAIKIAEDDIMLTDISAHPRHMKQMKSHQIEGFNFLVRNLVGDNPGGCILAHAPGSGKTFMII SFMQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDFYTVKADSRSQKLEVLKQWVEHKSILFLGYKQFSSIV CDNSMDSVSISCQDILLKVPSILILDEGHNPRNENTNMVHSLAKVKTQRKVVLSGTLYQNHVKEVFNILNLVRPKFLKME TSRPIVKRIHSRVHIPGKKTFFDLVEDTLQKDPDFKRKIAVIQDLREMTSKVLHYYKGDFLDELPGLVDFTVILNLTPRQ KHEIEKLKNISRKFKVSSLGSALYLHPRLKPVVEECSENCVSDQMVDDLIEKLDVKDGVKSKFFLNILNLCESSGEKLLV FSQYLLPLKYLERLTWKRKGWCVGKEIFGISGESSSEQREWAMERFNNSPDAKVFFGSIKACGEGISLVGASRVLILDVH LNPSVTRQAIGRAFRPGQTKKVFVYRLIAADSPEEEDHITSFKKELISKMWFEWNEYCGDRAFQVETTSAKECGDLFLAS PMLGEDIKALYKRFETTLPTFLHII
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 572 | 571 | 0.0 | – | |
| PANTHER | 2 | 572 | 571 | 0.0 | – | |
| Gene3D | 10 | 256 | 247 | 6.8E-48 | ||
| SUPERFAMILY | 22 | 237 | 216 | 3.4E-32 | ||
| SMART | 38 | 252 | 215 | 4.5E-11 | ||
| CDD | 42 | 250 | 209 | 9.33383E-78 | – | |
| Pfam | 46 | 322 | 277 | 4.1E-21 | ||
| ProSiteProfiles | 56 | 235 | 180 | 13.037 | ||
| SUPERFAMILY | 181 | 534 | 354 | 2.23E-37 | ||
| Gene3D | 305 | 575 | 271 | 6.3E-41 | – | |
| CDD | 371 | 508 | 138 | 4.8791E-39 | – | |
| ProSiteProfiles | 383 | 549 | 167 | 11.375 | ||
| Pfam | 385 | 496 | 112 | 7.6E-10 | ||
| SMART | 412 | 497 | 86 | 2.3E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi6g1v0190800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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