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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0191900 |
| Transcript ID | LotjaGi6g1v0191900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Non-structural maintenance of chromosomes element 1 like; TAIR: AT5G21140.1 embryo defective 1379; Swiss-Prot: sp|Q6P881|NSE1_XENTR Non-structural maintenance of chromosomes element 1 homolog; TrEMBL-Plants: tr|I3T4T2|I3T4T2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0191900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:48828885..48834346) extracted from Lotus japonicus Gifu genome v1.2.
ATAGATGATAGAGCAATCACAATAGGGGGGTTTGGTTGAGCTAACCATGATTAGACCACAAATTAATAATTTTCCATTTC TATTTATAATTGACCACTCTCTCCCGCCAGAGCAATATTTTTATTTGTTTTCCCCCCTCTTTCTTCCCAACCAAACGCTT CTTCTTCATCTTCCCCAAAATCCCTAATCGCTCCCTTCCCTCAACGGTTTCGCGCCACCCACGCCACCGCGCATCTCCTT ATTCTCCCCCTTCTCCGTCGCCGCCAGTTACGAGCTACTGAGGTAAATCCCTATTTTTCGGTGCAAATTCCGAACCATTT TTTTGTGTTCCTTTACCCTTTACTGCTCAGTTTCGGTTTTTTCAGAAGCACATAGTGATTTTCGTTTGCGTTTATTTTGG TTTAAGGAAGTTTCAGTTTGATGTATTTCTAGGGTTTGTTGTTACTGTTGAAGTTACTTGAAAACCTTGCGTATCTAACA TGGTGTTTAGTTTACTGTTTAGTTTCTGGGTGTCTTGATTCAATTTTGGGGTTAAAGTCTTCGTTGTTGTTGTTCGGTGC GTAAACGGACTTGCCGAAATATGCACTGAGGAGGAGCAAAAAACTTTGTTGTGAATTTGTAAGCTAAAATCTGGTTTGGT ATGTTAGTTTGTTTTTAGGAGTATGAAGAAGGTGTAGTGCAGTGTTATCAAATAGCGGCTACCCTATAGCGTAGTGGATT TTTGACTATCGCAACGCCGCCTATTCGCCGCCAAATAGCAGCCGAGATAGCGGATTTTTGGCTCACCGCGATGGTCCGCG ATCGTGATTTGATAACACTGGTGTAGTGGAATTGAATCATTCTTGGGTAAGGTAGTTTGATTCATTTTGAAGTTTAATGA AAAAGGGTGATATGATAAGTACCAATATGAAATGGAGTTTTCCCTAATACTAGTTAACTACATGATTGCTGCATCCTTAA ACTTTACATTTTCTAGCCTTCAAAAGTTGATGACTTAGAGCATCTCTATTAAACTTTTCTCCAATTGTTCGTCTCTATAA TTTTTATTATTATTGTTATCTTCCATTCCTGGATATGTGGAAGATTTTGGACCAGTTTTAATTCCTATTTCCTAAATTTG ATTCCACATTAGGGTTTTTGAATCTACATTGAAAGAAGGATGTCGGGTGGGTTAAACTCGAGGCACCATGTTGTAATTCA AGCTCTATTGTCACGAGGCCCGCTCAAGGAGAAGGAATTACACTCCATGTTTGAGGACATCACCAAGAGAAACCCAGGTT TTTCTTTCCCCCTTTCTCAAAAAATGTTTAGCAATTTTATTTTCAAACAGTTCTGTTGTTTGTTCAGTTTTTTTTTTCTC CCTGATTTGTTAGTTTTAATTTACACTGAAGTTGGTAGTTTTGTCATGCAACATTCAAGCCTTTTCCCATGATGGATATT TTTGCTTAAACATGGGTTTTTAAGTTAAGTTCTGATAATGCAGTCTAAGGCTGTAGCATGATCAATGAGGATGAAATGTA ACATGATTTGAAAATAGAGAAAGGGGGTAATGTTAGAAAAGAAACATTATTTTATAATTTCAGACTATTTGTACTGTGTT TTTTCTTGTCTTTTTTGTCATGACCTTGATTGCATTGGTTTTCCTGGTGTAGGCGCTGACCGTAAGCTATTTGATGCGTT TATTCTGACCATAAACAAAGCACTCACTTGTGCTAATTTTGAGTTGCGTGGCTGCATAGATCAATATGATGGGCAAGTTT ATTATGGAGTGGTCAATACTGTTTCTGATGAACAATCGAAGTTGGGAACGAAGTATACTGTTCCGCAGATTGCTTTCTAT AAGGCTGTTGTAAGTGTAGCCGAACTTGCTTGTGTTTTTCTATTAGTGTATGTCCTCAGATGTGGAAGAAATACCAGGCT ATATAAATTACTTGGCATGATCAATGATGCATTAAAGTATTTGTGGTTGTCCGTGTGTACGCCAACCTGTGTGTGTGTCT ATCATCTGACATAGTGTGATTTCTTTGAAATGAGAGGAATTTGTCTTAGAATTGATGCTTTGTTTTGAAAGATTGACATT TGATGATGACAAATTTAAATGCTTTGGTGAAAAAGCATGGATTTTAGGAAGTTGCTGCATTTGTCAGAGATGGAATAGTT GGGCTGTCAGATATTATGTAAATACTCATAGTCCATGTATACAAGATAGAAGTTTAAGAAGATTAGGTAGAAAGAAGGTT CTTAAGCACTCAACAACTGTGTATACTTACAATTACATTATTCTCAAGTGTCAGTTATCAGCTTGCTTAATCCTTAAATT CAGGGTGTGCATACAGATAGATCCAAAGGGAAGTATTAATAATAATTAGACCAGGGCTTCTTTTTCTGTGTGCATAACCA TTCAATAGAGAGCTCAGAGAAGATAGATGGGTGAAGAGGTGTTTAACTATGCATATTGCTATATGTGCAGAATAATAGTA TTTATTTTTGCAGAATAATAATTGGATTCCCAATATTTTGACATCTGAGACTAATAATCTTATAATGTTCTTTTTTTTGG CAAACAACAGATTGAAGCGATCGTTCAAGATGCCACTGCAAATGGTTATATCTCCAGCATTGGTGCTCTCAATCTTAATT TGGATAGTCAGGTTTTAAATTTTCACCTGCCTACATTTTTCTACTCAAACAATTTACTTTTAGTTTAATATACTGGTGTT AATGGCATGGCAGTGAAGTGCAATCAAACATGTGCATGTAAATGTTTGTAATTTGTCAATATATTAGATTAGTGATAATA TTTTATTTTTAGCTGGATGGACAGGACTAGCCAGCCTAAGATTAGGGGGAATTTAATTGTTTATAAATGCAATGAATTGT AAATATGCAATTTAATTGAAAATAGTTTATTGTTGTTATAGGCCGTCTCCTACACAGGTATTAGTTCTACTAGTTGCTAA TAAGTTAGTTGATTCTGTTCTGCCTATGTCAGTTTGTTAGAACTACCCTATGACTCAGTTAAGACAGTGTCTCTAATTGT TTTCAACTGATTGTGTAAAATATGAGGACTCTGTACTCAGTTCATTTGATTAAGAGAGATTACAGAAATTGCAGCTAACA CTTTCAGTATCTCTCTCCATGTTCTATTTTTTTCATTGTCCTTTAATTTTTCTCTGTTTCACTTTTTGTCCAAAAACACT GGGCTAATAGTCGTTGTTTCTGGCTTTTTGGTTGATAAGTATTGAAGACTTTGGGAAAACACATTTTTCTTTTTGTATAC ATATGTGCATTTCTTGGGGGGGGGGTTGAGCATTTTTTTGCTGTGAAACCATATACAGATTGGAGAACAAGATAATCAGG TCTGCTCTCAGGAAGCTTTTACACCTGTTATTGAGGAGGGGAATGAGTTAGGACATTTAGCGAAACAAAGATTATACTGA TTTCATATTAAAATTATTTTTATTCTTTTTCCTTATTTTTTGCTGCCAAACTAGAAGTACATTTTGGAGAGCAAGATAAC CTGTTCTGCTCATAGAAAATTATTACACATGCTATCAAGAGAAGAATGTTTTTGGAGATTTGTTGAAACATATGACAGCG GTTTCATATTGAAAAATATTTTTATTCCTTAATGTATTATGTATGGTAAATATAGATAATGGTGCTCAAATTTCATGGTC TATGCTCAGGTTACAGTTGCGACCGATCCACAATCTCAAGGAAGCCAAGCACTTGTCCCTCCTGCATTGAAGAATTTTGG CTTGTCTCAAAAGGAAAAAGCTCTAGATGAACTTGTGAGAGACCGGTGGCTTCATTTGACTACAGATGGTAATATTAAAC TTGGTGTGAAGTCATTCCTTGATCTTCGCAGTTGGTTTCTAAATAATGAGGTTCCATCCTGTCATGTTTGCAATGAAGCT GGAATAAAGGTTTGTTCCTGTTGCATTACAACAAGTCTTCCTTCCCTTTTCTTCTTTTCCTAACATTGGTTGTGATTATT TTGAATCAGCATTATACTCTGTTTTCTGTTGGGTTTAAGTGCTTAGTATCATGTAAATTTAAGGGGAATTTAAAAGGGAA AAAAACAGAAGCAGTAAGTCAACAATTGCAGTGGTTAGTTACATGTTAATCACAATTTGAACATCATTATAGTTTAGTGG TTAATTTATCACTAGTCACTACTAACTCTTTTTCATATGTATAATGCTTTCTAAAATTTTATGTTGTCATGTCATTCCTA TCACCTAATTGTCTGGCTTGATTAGGCACTGAGAACCAAGACAAGAAAATCACTAGTTTTTGTTTCTATTAGAAGGAATA GATGGGGATTTAGAATTTTGATAATGTAGATAGTATCAATTACCAATATACTTTCCACACATTGCCACTCTCTATTTGAT AATTCATTCATCAATGTATGACAGGCAGAGTTATGCCAAAATGAAAGCTGTACTGTTCGAATTCACCACTACTGCCTGAA GCAACTTTTCTCACAGAGAAAGGTATTAGTCTTGTTCCATTCTTACCTTGTTAGAAATTAGGAGAGGCCCAGACTATCTC ACTACTACTTAATGTTGTTTTAGGCTGCAAAAGTTTGCCCAAGTTGTAGCACTTCATGGCCCTATGTAGTACCCAAGGCT GAAGCACTACATATTGAAGAAGACAATGAACCTCCTCAGGAAAGCCAACGAGCTACTAGTTCTAAAAGAAAGAAGCGCAG AGCCAATATAGTCATTGAGGATGAAGATGTTGGATCCAGCAATCAGGATGAGCTGAATGGATTGACAAGAAAAGCGAGTA GAGCACGTAGAGCTAACGTTGCAGATACAGGAGGACCTAGTGCATCTCAATCTTCTGCAACTTCTGCTTTCAGAAGAGTT ACTCGAAGATCTAGTCAAATGTAAATCAGCTATGGTGCCATGTTGTACCAGGGAATGCTAGGTGAAGCGATATATATTTT GCTGCTGATGATTTTTGCTGAGATTCATGGTTATATGAATGAGCTTTTGTATCGATGCAGTTCGCTAGTAGTGAGTGACT ATTTTAAGCACCATCTTGTTTTGTTAGATTGACCTGTGGCTTGAATGCCAACGTTTTAGCAATCAAAATACTAATTTGTA AATTTGTGTCAATATTAGTCATGTCGAGGTAGATGTATCTTTTGATATGTATGGTTTAGAAGTGTTTTGCTTCTTCAATC ATGGCATTATTCTTTAACCATAAAGTTTATCATGAGTCATGACGCTGTTTAGCTTCGTATTAAACAAAATTTAAGATGTC TAGGGCATTCGCGTATTTCTAACTTACATTTTACCTTAACCTAAAGAGGCAAGCGTGGCTTAAATTTGTGACTGGTGAAA TAGTAGTATGAAATTCTATTCACTTAACTATCCTCTTGTGATTACAATGACTAATATTTATATACTTATTTGAAATCTAT ACCATTTATTTTATTAGTGAAC
CDS sequence (LotjaGi6g1v0191900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGGGTGGGTTAAACTCGAGGCACCATGTTGTAATTCAAGCTCTATTGTCACGAGGCCCGCTCAAGGAGAAGGAATT ACACTCCATGTTTGAGGACATCACCAAGAGAAACCCAGGCGCTGACCGTAAGCTATTTGATGCGTTTATTCTGACCATAA ACAAAGCACTCACTTGTGCTAATTTTGAGTTGCGTGGCTGCATAGATCAATATGATGGGCAAGTTTATTATGGAGTGGTC AATACTGTTTCTGATGAACAATCGAAGTTGGGAACGAAGTATACTGTTCCGCAGATTGCTTTCTATAAGGCTGTTATTGA AGCGATCGTTCAAGATGCCACTGCAAATGGTTATATCTCCAGCATTGGTGCTCTCAATCTTAATTTGGATAGTCAGGTTA CAGTTGCGACCGATCCACAATCTCAAGGAAGCCAAGCACTTGTCCCTCCTGCATTGAAGAATTTTGGCTTGTCTCAAAAG GAAAAAGCTCTAGATGAACTTGTGAGAGACCGGTGGCTTCATTTGACTACAGATGGTAATATTAAACTTGGTGTGAAGTC ATTCCTTGATCTTCGCAGTTGGTTTCTAAATAATGAGGTTCCATCCTGTCATGTTTGCAATGAAGCTGGAATAAAGGCAG AGTTATGCCAAAATGAAAGCTGTACTGTTCGAATTCACCACTACTGCCTGAAGCAACTTTTCTCACAGAGAAAGGCTGCA AAAGTTTGCCCAAGTTGTAGCACTTCATGGCCCTATGTAGTACCCAAGGCTGAAGCACTACATATTGAAGAAGACAATGA ACCTCCTCAGGAAAGCCAACGAGCTACTAGTTCTAAAAGAAAGAAGCGCAGAGCCAATATAGTCATTGAGGATGAAGATG TTGGATCCAGCAATCAGGATGAGCTGAATGGATTGACAAGAAAAGCGAGTAGAGCACGTAGAGCTAACGTTGCAGATACA GGAGGACCTAGTGCATCTCAATCTTCTGCAACTTCTGCTTTCAGAAGAGTTACTCGAAGATCTAGTCAAATGTAA
Protein sequence (LotjaGi6g1v0191900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGGLNSRHHVVIQALLSRGPLKEKELHSMFEDITKRNPGADRKLFDAFILTINKALTCANFELRGCIDQYDGQVYYGVV NTVSDEQSKLGTKYTVPQIAFYKAVIEAIVQDATANGYISSIGALNLNLDSQVTVATDPQSQGSQALVPPALKNFGLSQK EKALDELVRDRWLHLTTDGNIKLGVKSFLDLRSWFLNNEVPSCHVCNEAGIKAELCQNESCTVRIHHYCLKQLFSQRKAA KVCPSCSTSWPYVVPKAEALHIEEDNEPPQESQRATSSKRKKRRANIVIEDEDVGSSNQDELNGLTRKASRARRANVADT GGPSASQSSATSAFRRVTRRSSQM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 3 | 83 | 81 | 7.1E-11 | – | |
| PANTHER | 3 | 284 | 282 | 4.3E-103 | ||
| Pfam | 9 | 191 | 183 | 1.7E-43 | ||
| Gene3D | 85 | 199 | 115 | 2.6E-9 | ||
| Gene3D | 202 | 258 | 57 | 5.6E-12 | ||
| CDD | 202 | 249 | 48 | 4.5514E-17 | ||
| Pfam | 203 | 246 | 44 | 5.1E-9 | ||
| MobiDBLite | 263 | 344 | 82 | - | – | |
| MobiDBLite | 320 | 344 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Cellular component | Smc5-Smc6 complex | A conserved complex that contains a heterodimer of SMC proteins (Smc5p and Smc6p, or homologs thereof) and several other proteins, and is involved in DNA repair and maintaining cell cycle arrest following DNA damage. In S. cerevisiae, this is an octameric complex called Mms21-Smc5-Smc6 complex, with at least five of its subunits conserved in fission yeast and humans. |
Expression pattern of LotjaGi6g1v0191900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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