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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0201500 |
| Transcript ID | LotjaGi6g1v0201500.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cellulose synthase; TAIR: AT5G17420.1 Cellulose synthase family protein; Swiss-Prot: sp|Q9SWW6|CESA7_ARATH Cellulose synthase A catalytic subunit 7 [UDP]-forming]; TrEMBL-Plants: tr|A0A1J7HDL1|A0A1J7HDL1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0201500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:49883461..49888815) extracted from Lotus japonicus Gifu genome v1.2.
GGACACATGAAAAACAAGCACCTTTATACTTCAACTTAATTAGAACATGGGAAGAGTAATATTATATATGTTAACCCCAA CTCACTCATCCATACTTGCTCTACTTTCATTCCCCACCCACCATGGAGGCTAGTACTAGACTATTTGCAGGGTCTCATAA CAGCAATGAGCTTGTGGTGATCCAAGGAAATGATGAGGTACACCATAGAGAAATGAGGAAGATGTGTCTTTCGTATTGAA TTTTGAGACATTTTCTATATGCTTGAATGATATATTATTAAATTTTTGCAGCCTAAGCAAGTGAAAAACTTAGATGGACA GCTTTGTGAGATATGTGGTGATTCTGTGGGACTTACTGTGGACGGAGACTTGTTTGTAGCTTGTGAAGAGTGTGGCTTCC CGGTATGCAGGCCGTGCTATGAGTATGAAAGAAGGGAAGGGACTCAAGGTTGCCCTCAGTGCCATACAAGATACAAGCGA ATCAAAGGTAATTAGAATTCATTCAATCAATCAATCAAGCATGAATAAATGAATATTTTTTATTTTTGTAATTTCTGGGT TGAGTGTTATTTCTTGCTGTGCAAAGGAAGCCCAAGAGTGTCTGGAGATGAAGATGAAGATGATGTGGATGATATTGAAC AGGAATTTAAAATGGAAGAAGAAAAGTACAAGCTCAAGCAAGAAGAGATGCTGCAAGGGAAGATGAAACATGGAGATGAT GATGAGAATGCTAAACCATTACTGGTAGGTTCAGCAAAGGCCAATCTATGCCTTATAGAAGGAAACAAAATTCTGCAAGC ATTTAATTATCCAGTTAATTTAATTCATTCGTTTAATCCTTTCTACAATATTATATATTATTTATATGTAACATGCAGGT GAATGGGGAGCTGCCCATATCTTCTTACAGCATTGTAGAACCTGGTAATTTTTTCCTTTAGTTTGTGAAGTTATGAATAT ATTTATGAGGAAAGTGGAATTTTCTTCTTGCTACAATAACAAAAGAGAAAAGGGAACACGTGCTTATTATAATTATCACT TTTTAATGAAGCAGGTGGTGAAAAATTGGATGACAAGGAGAAAACAGATGACTGGAAGTTGAATCAAGGCAACCTATGGC CTGAAACTGCTGCCCCAGTTGATCCTGAAAAGAACATGTATGCACCATCACACCCTTCCCAACTTAGAAACCTTGTAATA CTATTTTAACAACCATGTGTCCTGAACTCAAGAAAAATCCTAAACTAATTGATGCTTTGTATCTTGTCATATTACAATGC TGCAGGAATGATGAAACAAGACAGCCACTCTCAAGGAAAGTAGCAATACCTTCAGGCAGACTCAGTCCCTATAGAATGAT GGTGGTGACTCGGCTCCTCCTTCTACTACTCTTCATTCAGTATAGAATATTCCACCCAGTGCCCGATGCAATTGGACTCT GGTTAATTTCTGTAGTATGTGAAATCTGGCTTACATTGTCATGGATAGTTGATCAGCTTCCCAAATGGTTTCCCATTGAC CGCGAGACATACCTTGATCGCCTTTCAATCAGGTGACCTAAATTTCTCTACTGAGATCCAAATGGAGCTAACTTTCATTT TTCAAGAGCAAGAGTTGACACCAAGTAAAAAAGTAATAAAAATAACATAGGCTATTAAAACAATTGAGTCACTGACAACA CATTATACAATGTTCATGTCTTAATATTTTTCTTTAATTCACTTCCACTGATAAATTCTAAGGTCTAAAGTAAATAACAG AATGGTGTTGATATGGTTGATTCTGCATCTGCTTCTGTAAGATCTGAAGTCTGAATTTGTAAGCTAAATGTCTATAACTT GTATGCAGGTTTGAACCGGAGAACAAGCCGAATATGCTATCTCCTGTTGATATCTTTGTCACAACTGTAGATCCAATAAA GGAACCTCCTCTAGTTACAGCCAATACTGTTCTTTCAATCTTGGCCTTGGATTATCCTGCTCACAAAATCTCATGCTACG TTTCTGATGATGGAGCTTCCATGCTCACCTTTGAAGCTCTTCAGGAAACTGCTGAATTTGCTCGAAAGTGGGTACCTTTT TGCAAAAAATTCTCTGCAGAACCTCGAGCACCAGAGAGGTACTTCTCACAGAAGATAGATTTTCTGAAGGATACGCTTCA GTCCACTTATGTAAAAGAACGCCGTACTATGAAGGTAAGAAGTAACCCTATTCAATGCCCCAATTTTTTTAAGAATATTA TGCTTCAGCAGTTGTGAAGAACCAAGTTTCATTGCTTCATGGTACTTACTTGGCAGAGAGAATATGAAGAATTTAAGGTG AGGATAAATGCACTTGTAGCAAAATCCTTGAGAGTTCCCCCAGAAGGTTGGACTCTGAAAGACGAGACACCATGGCCAGG AAACAATACAAAAGATCATCCAAGCATGATACAAATCCTTCTTGGTCATAGTGAAGGCCATGAAGGTAATGAGCTTCCAT GTCTTATCTACATTTCTCGAGAGAAAAGGCCAGCATTTCAGCATCATAGCAAAGCTGGTGCAATGAACGCCTTGGTAAAC ATTCCCAAAACCTTCTCGTCCTATCTTTCAGATTATATTTTTCTCATTCTCATGAAGCTGAAGTAAGATTTTCTTCAACC TGAATTTCCAGCTTCGTGTATCAGCAGTGCTAAGCAATGCTCCTTTTGTGCTCAACTTGGATTGCAATCATTATGTGAAT AACAGCAAAGTCGTGCGAGAAGCTATGTGTTTCTTTATGGACATACAATTTGGGAATAGCATTGGCTTTGTCCAGTTTCC ACTAAGATTTGACAGCCTTGATAGGAATGATCGTTATGCCAACAAAAACACTGTTTTATTTGATGTAAGTGCAACCATTT TAGCACTAAATTTTCTCTTTGATCTTGTTTTTTAAAATTCATTTGAATGGAAATTTGATAAGGTACCCCCCCCCCTTCTC TGTTCTTTTTTCTGCAGATTAACTTGAGGTGCCAAGATGGACTTCAGGGACCTGCTTATATTGGCTCAGCATGTATCTTC AGAAGGAAAGCTTTAAATGGCTTTGATCCTCCAAAGGCTTCAAAACGCCAACGAGAAGTACAAGTGCACTCAAAACAGGA TGAAAGTGGAGAGGATGGAAGCATAAAAGGTGAGCAAAATCCTCCATGATTTTACATAAATGCAAAAACAAATTTCTTTT CCCTTTCCATGTCTACAACTTCTGTTCTTTTTTCAGAAGCAACAGATGAAGACAAGCAGCTATTGAAGTCACATATGAAT GTTGAAAATAAATTTGGGAACTCTACACTTTTTATGAATTCTTCATTAACAGAAGAAGGTGGTGTTGATCCATCTTCAAG TCAGGAAGCTCTGCTTAAAGAAGCCATTCATGTCTTGAGTTGTAGATATGAAGATAGAACTCTCTGGGGATATGAGGTAT GGTAGAAAAGATAAAACTTGATCATTTTTTTTTTGTTCTTTCTATCAAGTTCTTTGATTGAACAATCACATGTGGACACT TTATTCACCATTAGAAAAAACCAGTTTTTCTCCGTGTCCTTCCATATACAACTGAAACATGCTTGATCACATATTCACAT TTGCCATTCACAGGTAGGTTTGAGCTATGGATCTATAGCAGCAGATGTTCTTACAAGTTTGAAGCTGCATTCTCGTGGCT GGAGATCTGTATACTGCATGCCAAAGAGAGCAGCATTCAGAGGCACAGCTCCTATCAACCTTACCGAACGACTTAATCAG GTGCTCAGATGGGCAGTGGGATCACTTGAGATCCTATTCAGCCGCCATTGCCCGATATGGTATGGCTTCAAGGAAGGAAG ACTCAAGGGGCTCCAGAGGATTGCCTATATTAACAGCACTGTCTACCCCTTCAGCTCAATACCCCTCCTAATATATTGTC TCATTCCTGCCATTTGCTTGCTCACTGATAAATTCATCACACCATCGGTAAAAAATTCCCTTCTAATAATTTATATTTAT CATTGTTAATTTGGGCTTAGATTCTGTTAGGCCTACTGGTAGTTATCTTTTTAATATGGATCAAACACATTTAATATGGA TATGGCTTTATCAAAAAGGAAGGTGTTATACCATTAGATAATCTAATCATAACCTCTAACATGAGTGTCAGATACATTTA AAATGATCATGCTGGATTAAATGAATATTAATGCATGTTGCAAGGGTTGAATATCACGCATGTAAAATGAGTAAACATTA GACTGCATTCCCTAAAGATAATCTAGTTTCTTTGATGGTTTTGCAATGAATTTTTCTTGAGGTCTTTCAAAATGCTTCTC AAGTTCTTGTTATCAGTGATAAAAAAGTGCTAGCTATCAGATACGACTTGGCGGAAACATAGGCCTTTTAAGATTACTCT AGACACATGCAAAATTTATTTAAGCCGTTTCCTGAGGTCTTTGTAAATTCTTCTCAAGTTCTTGTTTCACTACTGATGAA GCCATTTCTCATTGTTTCACTGTCCAGGTAGACACTTTTGCAAGTATGATCATCATTTCCCTGTTCATCTCAATCTTTGG ATCTGCTATTCTTGAGTTGAGATGGAGTGGAGTTAGCCTAGAGGAGTGGTGGAGAAGTCAGCAATTCTGGGTCATTGGCA GTGTGTCTGCACACCTCTTTGCCGTTGCACAAGCCCTTATGGGAGGCCTGGCTAAAAAAGTCAACAAAAACTTCAGTGTT GTATCCAAGGCCCCGGATGATGAAGAGTTTCATGAACTCTACACCATAAGATGGACAGCACTGCTAGTACCTCCAACCAC AATCATAATAATCAACCTCATTGGTGTTGTAGCTGGTTTCACAGATGCCATAAACAGTGGTGCACATTCTTATGGAGCAC TGCTTGGGAAGCTCTTCTTTTCTTTATGGGTTATTGCTCATCTCTATCCCTTCCTTAAAGGTTTGATGGGTAGGCAGAAC AGGACACCTACTCTTATTGTCATATGGTCTGTGCTTTTGGCTTCTATCTTCTCATTGGTTTGGGTAAGGCTTGACCCTTT TGTGTTGAAAACAAAGGGGCCTGATGTAAAGCAATGTGGAATCAGTTGCTGAATCCATTTTTACCAAAAATAATGTGAGA GTGAATTGTGAAACAACGTGCAACATGTCATTTTATTTTTCTATTTTGATTTTCAATAAGGGAAAGGAGATAGCGGAGAG CATTGTACTTAATTTTTGTAAGTAGGAATAAAGTGTTCTTGTGATTTTTTTTGGCTGCAAATGAGGTTGTGATCATCACT TAATTTATGCAACTGAAGATTCAAAATAGTACTTACAGTTATTATACTGATTGAAACCTGAGAAAGAGATACATA
CDS sequence (LotjaGi6g1v0201500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGCTAGTACTAGACTATTTGCAGGGTCTCATAACAGCAATGAGCTTGTGGTGATCCAAGGAAATGATGAGCCTAA GCAAGTGAAAAACTTAGATGGACAGCTTTGTGAGATATGTGGTGATTCTGTGGGACTTACTGTGGACGGAGACTTGTTTG TAGCTTGTGAAGAGTGTGGCTTCCCGGTATGCAGGCCGTGCTATGAGTATGAAAGAAGGGAAGGGACTCAAGGTTGCCCT CAGTGCCATACAAGATACAAGCGAATCAAAGGAAGCCCAAGAGTGTCTGGAGATGAAGATGAAGATGATGTGGATGATAT TGAACAGGAATTTAAAATGGAAGAAGAAAAGTACAAGCTCAAGCAAGAAGAGATGCTGCAAGGGAAGATGAAACATGGAG ATGATGATGAGAATGCTAAACCATTACTGGTGAATGGGGAGCTGCCCATATCTTCTTACAGCATTGTAGAACCTGGTGGT GAAAAATTGGATGACAAGGAGAAAACAGATGACTGGAAGTTGAATCAAGGCAACCTATGGCCTGAAACTGCTGCCCCAGT TGATCCTGAAAAGAACATGAATGATGAAACAAGACAGCCACTCTCAAGGAAAGTAGCAATACCTTCAGGCAGACTCAGTC CCTATAGAATGATGGTGGTGACTCGGCTCCTCCTTCTACTACTCTTCATTCAGTATAGAATATTCCACCCAGTGCCCGAT GCAATTGGACTCTGGTTAATTTCTGTAGTATGTGAAATCTGGCTTACATTGTCATGGATAGTTGATCAGCTTCCCAAATG GTTTCCCATTGACCGCGAGACATACCTTGATCGCCTTTCAATCAGGTTTGAACCGGAGAACAAGCCGAATATGCTATCTC CTGTTGATATCTTTGTCACAACTGTAGATCCAATAAAGGAACCTCCTCTAGTTACAGCCAATACTGTTCTTTCAATCTTG GCCTTGGATTATCCTGCTCACAAAATCTCATGCTACGTTTCTGATGATGGAGCTTCCATGCTCACCTTTGAAGCTCTTCA GGAAACTGCTGAATTTGCTCGAAAGTGGGTACCTTTTTGCAAAAAATTCTCTGCAGAACCTCGAGCACCAGAGAGGTACT TCTCACAGAAGATAGATTTTCTGAAGGATACGCTTCAGTCCACTTATGTAAAAGAACGCCGTACTATGAAGAGAGAATAT GAAGAATTTAAGGTGAGGATAAATGCACTTGTAGCAAAATCCTTGAGAGTTCCCCCAGAAGGTTGGACTCTGAAAGACGA GACACCATGGCCAGGAAACAATACAAAAGATCATCCAAGCATGATACAAATCCTTCTTGGTCATAGTGAAGGCCATGAAG GTAATGAGCTTCCATGTCTTATCTACATTTCTCGAGAGAAAAGGCCAGCATTTCAGCATCATAGCAAAGCTGGTGCAATG AACGCCTTGCTTCGTGTATCAGCAGTGCTAAGCAATGCTCCTTTTGTGCTCAACTTGGATTGCAATCATTATGTGAATAA CAGCAAAGTCGTGCGAGAAGCTATGTGTTTCTTTATGGACATACAATTTGGGAATAGCATTGGCTTTGTCCAGTTTCCAC TAAGATTTGACAGCCTTGATAGGAATGATCGTTATGCCAACAAAAACACTGTTTTATTTGATATTAACTTGAGGTGCCAA GATGGACTTCAGGGACCTGCTTATATTGGCTCAGCATGTATCTTCAGAAGGAAAGCTTTAAATGGCTTTGATCCTCCAAA GGCTTCAAAACGCCAACGAGAAGTACAAGTGCACTCAAAACAGGATGAAAGTGGAGAGGATGGAAGCATAAAAGAAGCAA CAGATGAAGACAAGCAGCTATTGAAGTCACATATGAATGTTGAAAATAAATTTGGGAACTCTACACTTTTTATGAATTCT TCATTAACAGAAGAAGGTGGTGTTGATCCATCTTCAAGTCAGGAAGCTCTGCTTAAAGAAGCCATTCATGTCTTGAGTTG TAGATATGAAGATAGAACTCTCTGGGGATATGAGGTAGGTTTGAGCTATGGATCTATAGCAGCAGATGTTCTTACAAGTT TGAAGCTGCATTCTCGTGGCTGGAGATCTGTATACTGCATGCCAAAGAGAGCAGCATTCAGAGGCACAGCTCCTATCAAC CTTACCGAACGACTTAATCAGGTGCTCAGATGGGCAGTGGGATCACTTGAGATCCTATTCAGCCGCCATTGCCCGATATG GTATGGCTTCAAGGAAGGAAGACTCAAGGGGCTCCAGAGGATTGCCTATATTAACAGCACTGTCTACCCCTTCAGCTCAA TACCCCTCCTAATATATTGTCTCATTCCTGCCATTTGCTTGCTCACTGATAAATTCATCACACCATCGGTAGACACTTTT GCAAGTATGATCATCATTTCCCTGTTCATCTCAATCTTTGGATCTGCTATTCTTGAGTTGAGATGGAGTGGAGTTAGCCT AGAGGAGTGGTGGAGAAGTCAGCAATTCTGGGTCATTGGCAGTGTGTCTGCACACCTCTTTGCCGTTGCACAAGCCCTTA TGGGAGGCCTGGCTAAAAAAGTCAACAAAAACTTCAGTGTTGTATCCAAGGCCCCGGATGATGAAGAGTTTCATGAACTC TACACCATAAGATGGACAGCACTGCTAGTACCTCCAACCACAATCATAATAATCAACCTCATTGGTGTTGTAGCTGGTTT CACAGATGCCATAAACAGTGGTGCACATTCTTATGGAGCACTGCTTGGGAAGCTCTTCTTTTCTTTATGGGTTATTGCTC ATCTCTATCCCTTCCTTAAAGGTTTGATGGGTAGGCAGAACAGGACACCTACTCTTATTGTCATATGGTCTGTGCTTTTG GCTTCTATCTTCTCATTGGTTTGGGTAAGGCTTGACCCTTTTGTGTTGAAAACAAAGGGGCCTGATGTAAAGCAATGTGG AATCAGTTGCTGA
Protein sequence (LotjaGi6g1v0201500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEASTRLFAGSHNSNELVVIQGNDEPKQVKNLDGQLCEICGDSVGLTVDGDLFVACEECGFPVCRPCYEYERREGTQGCP QCHTRYKRIKGSPRVSGDEDEDDVDDIEQEFKMEEEKYKLKQEEMLQGKMKHGDDDENAKPLLVNGELPISSYSIVEPGG EKLDDKEKTDDWKLNQGNLWPETAAPVDPEKNMNDETRQPLSRKVAIPSGRLSPYRMMVVTRLLLLLLFIQYRIFHPVPD AIGLWLISVVCEIWLTLSWIVDQLPKWFPIDRETYLDRLSIRFEPENKPNMLSPVDIFVTTVDPIKEPPLVTANTVLSIL ALDYPAHKISCYVSDDGASMLTFEALQETAEFARKWVPFCKKFSAEPRAPERYFSQKIDFLKDTLQSTYVKERRTMKREY EEFKVRINALVAKSLRVPPEGWTLKDETPWPGNNTKDHPSMIQILLGHSEGHEGNELPCLIYISREKRPAFQHHSKAGAM NALLRVSAVLSNAPFVLNLDCNHYVNNSKVVREAMCFFMDIQFGNSIGFVQFPLRFDSLDRNDRYANKNTVLFDINLRCQ DGLQGPAYIGSACIFRRKALNGFDPPKASKRQREVQVHSKQDESGEDGSIKEATDEDKQLLKSHMNVENKFGNSTLFMNS SLTEEGGVDPSSSQEALLKEAIHVLSCRYEDRTLWGYEVGLSYGSIAADVLTSLKLHSRGWRSVYCMPKRAAFRGTAPIN LTERLNQVLRWAVGSLEILFSRHCPIWYGFKEGRLKGLQRIAYINSTVYPFSSIPLLIYCLIPAICLLTDKFITPSVDTF ASMIIISLFISIFGSAILELRWSGVSLEEWWRSQQFWVIGSVSAHLFAVAQALMGGLAKKVNKNFSVVSKAPDDEEFHEL YTIRWTALLVPPTTIIIINLIGVVAGFTDAINSGAHSYGALLGKLFFSLWVIAHLYPFLKGLMGRQNRTPTLIVIWSVLL ASIFSLVWVRLDPFVLKTKGPDVKQCGISC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 988 | 988 | 0.0 | – | |
| Phobius | 1 | 218 | 218 | - | – | |
| PANTHER | 1 | 988 | 988 | 0.0 | – | |
| Gene3D | 20 | 110 | 91 | 1.2E-42 | ||
| SUPERFAMILY | 22 | 105 | 84 | 3.65E-36 | – | |
| Pfam | 27 | 104 | 78 | 2.3E-39 | ||
| CDD | 35 | 85 | 51 | 3.73849E-32 | – | |
| Coils | 104 | 124 | 21 | - | – | |
| MobiDBLite | 179 | 200 | 22 | - | – | |
| Phobius | 219 | 235 | 17 | - | – | |
| Phobius | 236 | 240 | 5 | - | – | |
| Phobius | 241 | 261 | 21 | - | – | |
| Phobius | 262 | 727 | 466 | - | – | |
| Gene3D | 284 | 391 | 108 | 7.8E-6 | ||
| Pfam | 295 | 984 | 690 | 0.0 | ||
| SUPERFAMILY | 307 | 808 | 502 | 4.61E-12 | ||
| Coils | 393 | 413 | 21 | - | – | |
| Gene3D | 436 | 585 | 150 | 7.3E-11 | ||
| MobiDBLite | 585 | 613 | 29 | - | – | |
| Phobius | 728 | 748 | 21 | - | – | |
| Phobius | 749 | 767 | 19 | - | – | |
| TMHMM | 766 | 788 | 23 | - | – | |
| Phobius | 768 | 788 | 21 | - | – | |
| Phobius | 789 | 799 | 11 | - | – | |
| Phobius | 800 | 818 | 19 | - | – | |
| TMHMM | 800 | 822 | 23 | - | – | |
| Phobius | 819 | 837 | 19 | - | – | |
| TMHMM | 835 | 857 | 23 | - | – | |
| Phobius | 838 | 858 | 21 | - | – | |
| Phobius | 859 | 884 | 26 | - | – | |
| TMHMM | 885 | 907 | 23 | - | – | |
| Phobius | 885 | 907 | 23 | - | – | |
| Phobius | 908 | 918 | 11 | - | – | |
| TMHMM | 917 | 939 | 23 | - | – | |
| Phobius | 919 | 939 | 21 | - | – | |
| Phobius | 940 | 950 | 11 | - | – | |
| Phobius | 951 | 971 | 21 | - | – | |
| TMHMM | 952 | 971 | 20 | - | – | |
| Phobius | 972 | 990 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Cellulose synthase (UDP-forming) activity | Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1). | ||
| Biological process | Cellulose biosynthetic process | The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. |
Expression pattern of LotjaGi6g1v0201500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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