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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0201500 |
| Transcript ID | LotjaGi6g1v0201500.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cellulose synthase; TAIR: AT5G17420.1 Cellulose synthase family protein; Swiss-Prot: sp|Q9SWW6|CESA7_ARATH Cellulose synthase A catalytic subunit 7 [UDP]-forming]; TrEMBL-Plants: tr|A0A1J7HDL1|A0A1J7HDL1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0201500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:49883724..49888693) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGGCTAGTACTAGACTATTTGCAGGGTCTCATAACAGCAATGAGCTTGTGGTGATCCAAGGAAATGATGAGGTACA CCATAGAGAAATGAGGAAGATGTGTCTTTCGTATTGAATTTTGAGACATTTTCTATATGCTTGAATGATATATTATTAAA TTTTTGCAGCCTAAGCAAGTGAAAAACTTAGATGGACAGCTTTGTGAGATATGTGGTGATTCTGTGGGACTTACTGTGGA CGGAGACTTGTTTGTAGCTTGTGAAGAGTGTGGCTTCCCGGTATGCAGGCCGTGCTATGAGTATGAAAGAAGGGAAGGGA CTCAAGGTTGCCCTCAGTGCCATACAAGATACAAGCGAATCAAAGGTAATTAGAATTCATTCAATCAATCAATCAAGCAT GAATAAATGAATATTTTTTATTTTTGTAATTTCTGGGTTGAGTGTTATTTCTTGCTGTGCAAAGGAAGCCCAAGAGTGTC TGGAGATGAAGATGAAGATGATGTGGATGATATTGAACAGGAATTTAAAATGGAAGAAGAAAAGTACAAGCTCAAGCAAG AAGAGATGCTGCAAGGGAAGATGAAACATGGAGATGATGATGAGAATGCTAAACCATTACTGGTAGGTTCAGCAAAGGCC AATCTATGCCTTATAGAAGGAAACAAAATTCTGCAAGCATTTAATTATCCAGTTAATTTAATTCATTCGTTTAATCCTTT CTACAATATTATATATTATTTATATGTAACATGCAGGTGAATGGGGAGCTGCCCATATCTTCTTACAGCATTGTAGAACC TGGTAATTTTTTCCTTTAGTTTGTGAAGTTATGAATATATTTATGAGGAAAGTGGAATTTTCTTCTTGCTACAATAACAA AAGAGAAAAGGGAACACGTGCTTATTATAATTATCACTTTTTAATGAAGCAGGTGGTGAAAAATTGGATGACAAGGAGAA AACAGATGACTGGAAGTTGAATCAAGGCAACCTATGGCCTGAAACTGCTGCCCCAGTTGATCCTGAAAAGAACATGTATG CACCATCACACCCTTCCCAACTTAGAAACCTTGTAATACTATTTTAACAACCATGTGTCCTGAACTCAAGAAAAATCCTA AACTAATTGATGCTTTGTATCTTGTCATATTACAATGCTGCAGGAATGATGAAACAAGACAGCCACTCTCAAGGAAAGTA GCAATACCTTCAGGCAGACTCAGTCCCTATAGAATGATGGTGGTGACTCGGCTCCTCCTTCTACTACTCTTCATTCAGTA TAGAATATTCCACCCAGTGCCCGATGCAATTGGACTCTGGTTAATTTCTGTAGTATGTGAAATCTGGCTTACATTGTCAT GGATAGTTGATCAGCTTCCCAAATGGTTTCCCATTGACCGCGAGACATACCTTGATCGCCTTTCAATCAGGTGACCTAAA TTTCTCTACTGAGATCCAAATGGAGCTAACTTTCATTTTTCAAGAGCAAGAGTTGACACCAAGTAAAAAAGTAATAAAAA TAACATAGGCTATTAAAACAATTGAGTCACTGACAACACATTATACAATGTTCATGTCTTAATATTTTTCTTTAATTCAC TTCCACTGATAAATTCTAAGGTCTAAAGTAAATAACAGAATGGTGTTGATATGGTTGATTCTGCATCTGCTTCTGTAAGA TCTGAAGTCTGAATTTGTAAGCTAAATGTCTATAACTTGTATGCAGGTTTGAACCGGAGAACAAGCCGAATATGCTATCT CCTGTTGATATCTTTGTCACAACTGTAGATCCAATAAAGGAACCTCCTCTAGTTACAGCCAATACTGTTCTTTCAATCTT GGCCTTGGATTATCCTGCTCACAAAATCTCATGCTACGTTTCTGATGATGGAGCTTCCATGCTCACCTTTGAAGCTCTTC AGGAAACTGCTGAATTTGCTCGAAAGTGGGTACCTTTTTGCAAAAAATTCTCTGCAGAACCTCGAGCACCAGAGAGGTAC TTCTCACAGAAGATAGATTTTCTGAAGGATACGCTTCAGTCCACTTATGTAAAAGAACGCCGTACTATGAAGGTAAGAAG TAACCCTATTCAATGCCCCAATTTTTTTAAGAATATTATGCTTCAGCAGTTGTGAAGAACCAAGTTTCATTGCTTCATGG TACTTACTTGGCAGAGAGAATATGAAGAATTTAAGGTGAGGATAAATGCACTTGTAGCAAAATCCTTGAGAGTTCCCCCA GAAGGTTGGACTCTGAAAGACGAGACACCATGGCCAGGAAACAATACAAAAGATCATCCAAGCATGATACAAATCCTTCT TGGTCATAGTGAAGGCCATGAAGGTAATGAGCTTCCATGTCTTATCTACATTTCTCGAGAGAAAAGGCCAGCATTTCAGC ATCATAGCAAAGCTGGTGCAATGAACGCCTTGGTAAACATTCCCAAAACCTTCTCGTCCTATCTTTCAGATTATATTTTT CTCATTCTCATGAAGCTGAAGTAAGATTTTCTTCAACCTGAATTTCCAGCTTCGTGTATCAGCAGTGCTAAGCAATGCTC CTTTTGTGCTCAACTTGGATTGCAATCATTATGTGAATAACAGCAAAGTCGTGCGAGAAGCTATGTGTTTCTTTATGGAC ATACAATTTGGGAATAGCATTGGCTTTGTCCAGTTTCCACTAAGATTTGACAGCCTTGATAGGAATGATCGTTATGCCAA CAAAAACACTGTTTTATTTGATGTAAGTGCAACCATTTTAGCACTAAATTTTCTCTTTGATCTTGTTTTTTAAAATTCAT TTGAATGGAAATTTGATAAGGTACCCCCCCCCCTTCTCTGTTCTTTTTTCTGCAGATTAACTTGAGGTGCCAAGATGGAC TTCAGGGACCTGCTTATATTGGCTCAGCATGTATCTTCAGAAGGAAAGCTTTAAATGGCTTTGATCCTCCAAAGGCTTCA AAACGCCAACGAGAAGTACAAGTGCACTCAAAACAGGATGAAAGTGGAGAGGATGGAAGCATAAAAGGTGAGCAAAATCC TCCATGATTTTACATAAATGCAAAAACAAATTTCTTTTCCCTTTCCATGTCTACAACTTCTGTTCTTTTTTCAGAAGCAA CAGATGAAGACAAGCAGCTATTGAAGTCACATATGAATGTTGAAAATAAATTTGGGAACTCTACACTTTTTATGAATTCT TCATTAACAGAAGAAGGTGGTGTTGATCCATCTTCAAGTCAGGAAGCTCTGCTTAAAGAAGCCATTCATGTCTTGAGTTG TAGATATGAAGATAGAACTCTCTGGGGATATGAGGTATGGTAGAAAAGATAAAACTTGATCATTTTTTTTTTGTTCTTTC TATCAAGTTCTTTGATTGAACAATCACATGTGGACACTTTATTCACCATTAGAAAAAACCAGTTTTTCTCCGTGTCCTTC CATATACAACTGAAACATGCTTGATCACATATTCACATTTGCCATTCACAGGTAGGTTTGAGCTATGGATCTATAGCAGC AGATGTTCTTACAAGTTTGAAGCTGCATTCTCGTGGCTGGAGATCTGTATACTGCATGCCAAAGAGAGCAGCATTCAGAG GCACAGCTCCTATCAACCTTACCGAACGACTTAATCAGGTGCTCAGATGGGCAGTGGGATCACTTGAGATCCTATTCAGC CGCCATTGCCCGATATGGTATGGCTTCAAGGAAGGAAGACTCAAGGGGCTCCAGAGGATTGCCTATATTAACAGCACTGT CTACCCCTTCAGCTCAATACCCCTCCTAATATATTGTCTCATTCCTGCCATTTGCTTGCTCACTGATAAATTCATCACAC CATCGGTAAAAAATTCCCTTCTAATAATTTATATTTATCATTGTTAATTTGGGCTTAGATTCTGTTAGGCCTACTGGTAG TTATCTTTTTAATATGGATCAAACACATTTAATATGGATATGGCTTTATCAAAAAGGAAGGTGTTATACCATTAGATAAT CTAATCATAACCTCTAACATGAGTGTCAGATACATTTAAAATGATCATGCTGGATTAAATGAATATTAATGCATGTTGCA AGGGTTGAATATCACGCATGTAAAATGAGTAAACATTAGACTGCATTCCCTAAAGATAATCTAGTTTCTTTGATGGTTTT GCAATGAATTTTTCTTGAGGTCTTTCAAAATGCTTCTCAAGTTCTTGTTATCAGTGATAAAAAAGTGCTAGCTATCAGAT ACGACTTGGCGGAAACATAGGCCTTTTAAGATTACTCTAGACACATGCAAAATTTATTTAAGCCGTTTCCTGAGGTCTTT GTAAATTCTTCTCAAGTTCTTGTTTCACTACTGATGAAGCCATTTCTCATTGTTTCACTGTCCAGGTAGACACTTTTGCA AGTATGATCATCATTTCCCTGTTCATCTCAATCTTTGGATCTGCTATTCTTGAGTTGAGATGGAGTGGAGTTAGCCTAGA GGAGTGGTGGAGAAGTCAGCAATTCTGGGTCATTGGCAGTGTGTCTGCACACCTCTTTGCCGTTGCACAAGCCCTTATGG GAGGCCTGGCTAAAAAAGTCAACAAAAACTTCAGTGTTGTATCCAAGGCCCCGGATGATGAAGAGTTTCATGAACTCTAC ACCATAAGATGGACAGCACTGCTAGTACCTCCAACCACAATCATAATAATCAACCTCATTGGTGTTGTAGCTGGTTTCAC AGATGCCATAAACAGTGGTGCACATTCTTATGGAGCACTGCTTGGGAAGCTCTTCTTTTCTTTATGGGTTATTGCTCATC TCTATCCCTTCCTTAAAGGTTTGATGGGTAGGCAGAACAGGACACCTACTCTTATTGTCATATGGTCTGTGCTTTTGGCT TCTATCTTCTCATTGGTTTGGGTAAGGCTTGACCCTTTTGTGTTGAAAACAAAGGGGCCTGATGTAAAGCAATGTGGAAT CAGTTGCTGA
CDS sequence (LotjaGi6g1v0201500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGCTAGTACTAGACTATTTGCAGGGTCTCATAACAGCAATGAGCTTGTGGTGATCCAAGGAAATGATGAGCCTAA GCAAGTGAAAAACTTAGATGGACAGCTTTGTGAGATATGTGGTGATTCTGTGGGACTTACTGTGGACGGAGACTTGTTTG TAGCTTGTGAAGAGTGTGGCTTCCCGGTATGCAGGCCGTGCTATGAGTATGAAAGAAGGGAAGGGACTCAAGGTTGCCCT CAGTGCCATACAAGATACAAGCGAATCAAAGGAAGCCCAAGAGTGTCTGGAGATGAAGATGAAGATGATGTGGATGATAT TGAACAGGAATTTAAAATGGAAGAAGAAAAGTACAAGCTCAAGCAAGAAGAGATGCTGCAAGGGAAGATGAAACATGGAG ATGATGATGAGAATGCTAAACCATTACTGGTGAATGGGGAGCTGCCCATATCTTCTTACAGCATTGTAGAACCTGCAGGT GGTGAAAAATTGGATGACAAGGAGAAAACAGATGACTGGAAGTTGAATCAAGGCAACCTATGGCCTGAAACTGCTGCCCC AGTTGATCCTGAAAAGAACATGAATGATGAAACAAGACAGCCACTCTCAAGGAAAGTAGCAATACCTTCAGGCAGACTCA GTCCCTATAGAATGATGGTGGTGACTCGGCTCCTCCTTCTACTACTCTTCATTCAGTATAGAATATTCCACCCAGTGCCC GATGCAATTGGACTCTGGTTAATTTCTGTAGTATGTGAAATCTGGCTTACATTGTCATGGATAGTTGATCAGCTTCCCAA ATGGTTTCCCATTGACCGCGAGACATACCTTGATCGCCTTTCAATCAGGTTTGAACCGGAGAACAAGCCGAATATGCTAT CTCCTGTTGATATCTTTGTCACAACTGTAGATCCAATAAAGGAACCTCCTCTAGTTACAGCCAATACTGTTCTTTCAATC TTGGCCTTGGATTATCCTGCTCACAAAATCTCATGCTACGTTTCTGATGATGGAGCTTCCATGCTCACCTTTGAAGCTCT TCAGGAAACTGCTGAATTTGCTCGAAAGTGGGTACCTTTTTGCAAAAAATTCTCTGCAGAACCTCGAGCACCAGAGAGGT ACTTCTCACAGAAGATAGATTTTCTGAAGGATACGCTTCAGTCCACTTATGTAAAAGAACGCCGTACTATGAAGAGAGAA TATGAAGAATTTAAGGTGAGGATAAATGCACTTGTAGCAAAATCCTTGAGAGTTCCCCCAGAAGGTTGGACTCTGAAAGA CGAGACACCATGGCCAGGAAACAATACAAAAGATCATCCAAGCATGATACAAATCCTTCTTGGTCATAGTGAAGGCCATG AAGGTAATGAGCTTCCATGTCTTATCTACATTTCTCGAGAGAAAAGGCCAGCATTTCAGCATCATAGCAAAGCTGGTGCA ATGAACGCCTTGCTTCGTGTATCAGCAGTGCTAAGCAATGCTCCTTTTGTGCTCAACTTGGATTGCAATCATTATGTGAA TAACAGCAAAGTCGTGCGAGAAGCTATGTGTTTCTTTATGGACATACAATTTGGGAATAGCATTGGCTTTGTCCAGTTTC CACTAAGATTTGACAGCCTTGATAGGAATGATCGTTATGCCAACAAAAACACTGTTTTATTTGATATTAACTTGAGGTGC CAAGATGGACTTCAGGGACCTGCTTATATTGGCTCAGCATGTATCTTCAGAAGGAAAGCTTTAAATGGCTTTGATCCTCC AAAGGCTTCAAAACGCCAACGAGAAGTACAAGTGCACTCAAAACAGGATGAAAGTGGAGAGGATGGAAAAGCAACAGATG AAGACAAGCAGCTATTGAAGTCACATATGAATGTTGAAAATAAATTTGGGAACTCTACACTTTTTATGAATTCTTCATTA ACAGAAGAAGGTGGTGTTGATCCATCTTCAAGTCAGGAAGCTCTGCTTAAAGAAGCCATTCATGTCTTGAGTTGTAGATA TGAAGATAGAACTCTCTGGGGATATGAGGTAGGTTTGAGCTATGGATCTATAGCAGCAGATGTTCTTACAAGTTTGAAGC TGCATTCTCGTGGCTGGAGATCTGTATACTGCATGCCAAAGAGAGCAGCATTCAGAGGCACAGCTCCTATCAACCTTACC GAACGACTTAATCAGGTGCTCAGATGGGCAGTGGGATCACTTGAGATCCTATTCAGCCGCCATTGCCCGATATGGTATGG CTTCAAGGAAGGAAGACTCAAGGGGCTCCAGAGGATTGCCTATATTAACAGCACTGTCTACCCCTTCAGCTCAATACCCC TCCTAATATATTGTCTCATTCCTGCCATTTGCTTGCTCACTGATAAATTCATCACACCATCGGTAGACACTTTTGCAAGT ATGATCATCATTTCCCTGTTCATCTCAATCTTTGGATCTGCTATTCTTGAGTTGAGATGGAGTGGAGTTAGCCTAGAGGA GTGGTGGAGAAGTCAGCAATTCTGGGTCATTGGCAGTGTGTCTGCACACCTCTTTGCCGTTGCACAAGCCCTTATGGGAG GCCTGGCTAAAAAAGTCAACAAAAACTTCAGTGTTGTATCCAAGGCCCCGGATGATGAAGAGTTTCATGAACTCTACACC ATAAGATGGACAGCACTGCTAGTACCTCCAACCACAATCATAATAATCAACCTCATTGGTGTTGTAGCTGGTTTCACAGA TGCCATAAACAGTGGTGCACATTCTTATGGAGCACTGCTTGGGAAGCTCTTCTTTTCTTTATGGGTTATTGCTCATCTCT ATCCCTTCCTTAAAGGTTTGATGGGTAGGCAGAACAGGACACCTACTCTTATTGTCATATGGTCTGTGCTTTTGGCTTCT ATCTTCTCATTGGTTTGGGTAAGGCTTGACCCTTTTGTGTTGAAAACAAAGGGGCCTGATGTAAAGCAATGTGGAATCAG TTGCTGA
Protein sequence (LotjaGi6g1v0201500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEASTRLFAGSHNSNELVVIQGNDEPKQVKNLDGQLCEICGDSVGLTVDGDLFVACEECGFPVCRPCYEYERREGTQGCP QCHTRYKRIKGSPRVSGDEDEDDVDDIEQEFKMEEEKYKLKQEEMLQGKMKHGDDDENAKPLLVNGELPISSYSIVEPAG GEKLDDKEKTDDWKLNQGNLWPETAAPVDPEKNMNDETRQPLSRKVAIPSGRLSPYRMMVVTRLLLLLLFIQYRIFHPVP DAIGLWLISVVCEIWLTLSWIVDQLPKWFPIDRETYLDRLSIRFEPENKPNMLSPVDIFVTTVDPIKEPPLVTANTVLSI LALDYPAHKISCYVSDDGASMLTFEALQETAEFARKWVPFCKKFSAEPRAPERYFSQKIDFLKDTLQSTYVKERRTMKRE YEEFKVRINALVAKSLRVPPEGWTLKDETPWPGNNTKDHPSMIQILLGHSEGHEGNELPCLIYISREKRPAFQHHSKAGA MNALLRVSAVLSNAPFVLNLDCNHYVNNSKVVREAMCFFMDIQFGNSIGFVQFPLRFDSLDRNDRYANKNTVLFDINLRC QDGLQGPAYIGSACIFRRKALNGFDPPKASKRQREVQVHSKQDESGEDGKATDEDKQLLKSHMNVENKFGNSTLFMNSSL TEEGGVDPSSSQEALLKEAIHVLSCRYEDRTLWGYEVGLSYGSIAADVLTSLKLHSRGWRSVYCMPKRAAFRGTAPINLT ERLNQVLRWAVGSLEILFSRHCPIWYGFKEGRLKGLQRIAYINSTVYPFSSIPLLIYCLIPAICLLTDKFITPSVDTFAS MIIISLFISIFGSAILELRWSGVSLEEWWRSQQFWVIGSVSAHLFAVAQALMGGLAKKVNKNFSVVSKAPDDEEFHELYT IRWTALLVPPTTIIIINLIGVVAGFTDAINSGAHSYGALLGKLFFSLWVIAHLYPFLKGLMGRQNRTPTLIVIWSVLLAS IFSLVWVRLDPFVLKTKGPDVKQCGISC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 986 | 986 | 0.0 | – | |
| Phobius | 1 | 219 | 219 | - | – | |
| PANTHER | 1 | 986 | 986 | 0.0 | – | |
| Gene3D | 20 | 110 | 91 | 1.2E-42 | ||
| SUPERFAMILY | 22 | 105 | 84 | 3.65E-36 | – | |
| Pfam | 27 | 104 | 78 | 2.3E-39 | ||
| CDD | 35 | 85 | 51 | 3.73097E-32 | – | |
| Coils | 104 | 124 | 21 | - | – | |
| MobiDBLite | 180 | 201 | 22 | - | – | |
| Phobius | 220 | 236 | 17 | - | – | |
| Phobius | 237 | 241 | 5 | - | – | |
| Phobius | 242 | 262 | 21 | - | – | |
| Phobius | 263 | 725 | 463 | - | – | |
| Gene3D | 285 | 392 | 108 | 7.7E-6 | ||
| Pfam | 296 | 982 | 687 | 0.0 | ||
| SUPERFAMILY | 308 | 804 | 497 | 4.28E-12 | ||
| Coils | 394 | 414 | 21 | - | – | |
| Gene3D | 437 | 586 | 150 | 7.3E-11 | ||
| MobiDBLite | 586 | 614 | 29 | - | – | |
| Phobius | 726 | 746 | 21 | - | – | |
| Phobius | 747 | 765 | 19 | - | – | |
| TMHMM | 764 | 786 | 23 | - | – | |
| Phobius | 766 | 786 | 21 | - | – | |
| Phobius | 787 | 797 | 11 | - | – | |
| TMHMM | 798 | 820 | 23 | - | – | |
| Phobius | 798 | 816 | 19 | - | – | |
| Phobius | 817 | 835 | 19 | - | – | |
| TMHMM | 833 | 855 | 23 | - | – | |
| Phobius | 836 | 856 | 21 | - | – | |
| Phobius | 857 | 882 | 26 | - | – | |
| TMHMM | 883 | 905 | 23 | - | – | |
| Phobius | 883 | 905 | 23 | - | – | |
| Phobius | 906 | 916 | 11 | - | – | |
| TMHMM | 915 | 937 | 23 | - | – | |
| Phobius | 917 | 937 | 21 | - | – | |
| Phobius | 938 | 948 | 11 | - | – | |
| Phobius | 949 | 969 | 21 | - | – | |
| TMHMM | 950 | 969 | 20 | - | – | |
| Phobius | 970 | 988 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Cellulose synthase (UDP-forming) activity | Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1). | ||
| Biological process | Cellulose biosynthetic process | The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. |
Expression pattern of LotjaGi6g1v0201500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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