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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0201500 |
| Transcript ID | LotjaGi6g1v0201500.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cellulose synthase; TAIR: AT5G17420.1 Cellulose synthase family protein; Swiss-Prot: sp|Q9SWW6|CESA7_ARATH Cellulose synthase A catalytic subunit 7 [UDP]-forming]; TrEMBL-Plants: tr|G7LFG6|G7LFG6_MEDTR Cellulose synthase; Found in the gene: LotjaGi6g1v0201500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:49883724..49888693) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGGCTAGTACTAGACTATTTGCAGGGTCTCATAACAGCAATGAGCTTGTGGTGATCCAAGGAAATGATGAGGTACA CCATAGAGAAATGAGGAAGATGTGTCTTTCGTATTGAATTTTGAGACATTTTCTATATGCTTGAATGATATATTATTAAA TTTTTGCAGCCTAAGCAAGTGAAAAACTTAGATGGACAGCTTTGTGAGATATGTGGTGATTCTGTGGGACTTACTGTGGA CGGAGACTTGTTTGTAGCTTGTGAAGAGTGTGGCTTCCCGGTATGCAGGCCGTGCTATGAGTATGAAAGAAGGGAAGGGA CTCAAGGTTGCCCTCAGTGCCATACAAGATACAAGCGAATCAAAGGTAATTAGAATTCATTCAATCAATCAATCAAGCAT GAATAAATGAATATTTTTTATTTTTGTAATTTCTGGGTTGAGTGTTATTTCTTGCTGTGCAAAGGAAGCCCAAGAGTGTC TGGAGATGAAGATGAAGATGATGTGGATGATATTGAACAGGAATTTAAAATGGAAGAAGAAAAGTACAAGCTCAAGCAAG AAGAGATGCTGCAAGGGAAGATGAAACATGGAGATGATGATGAGAATGCTAAACCATTACTGGTAGGTTCAGCAAAGGCC AATCTATGCCTTATAGAAGGAAACAAAATTCTGCAAGCATTTAATTATCCAGTTAATTTAATTCATTCGTTTAATCCTTT CTACAATATTATATATTATTTATATGTAACATGCAGGTGAATGGGGAGCTGCCCATATCTTCTTACAGCATTGTAGAACC TGGTAATTTTTTCCTTTAGTTTGTGAAGTTATGAATATATTTATGAGGAAAGTGGAATTTTCTTCTTGCTACAATAACAA AAGAGAAAAGGGAACACGTGCTTATTATAATTATCACTTTTTAATGAAGCAGGTGGTGAAAAATTGGATGACAAGGAGAA AACAGATGACTGGAAGTTGAATCAAGGCAACCTATGGCCTGAAACTGCTGCCCCAGTTGATCCTGAAAAGAACATGTATG CACCATCACACCCTTCCCAACTTAGAAACCTTGTAATACTATTTTAACAACCATGTGTCCTGAACTCAAGAAAAATCCTA AACTAATTGATGCTTTGTATCTTGTCATATTACAATGCTGCAGGAATGATGAAACAAGACAGCCACTCTCAAGGAAAGTA GCAATACCTTCAGGCAGACTCAGTCCCTATAGAATGATGGTGGTGACTCGGCTCCTCCTTCTACTACTCTTCATTCAGTA TAGAATATTCCACCCAGTGCCCGATGCAATTGGACTCTGGTTAATTTCTGTAGTATGTGAAATCTGGCTTACATTGTCAT GGATAGTTGATCAGCTTCCCAAATGGTTTCCCATTGACCGCGAGACATACCTTGATCGCCTTTCAATCAGGTGACCTAAA TTTCTCTACTGAGATCCAAATGGAGCTAACTTTCATTTTTCAAGAGCAAGAGTTGACACCAAGTAAAAAAGTAATAAAAA TAACATAGGCTATTAAAACAATTGAGTCACTGACAACACATTATACAATGTTCATGTCTTAATATTTTTCTTTAATTCAC TTCCACTGATAAATTCTAAGGTCTAAAGTAAATAACAGAATGGTGTTGATATGGTTGATTCTGCATCTGCTTCTGTAAGA TCTGAAGTCTGAATTTGTAAGCTAAATGTCTATAACTTGTATGCAGGTTTGAACCGGAGAACAAGCCGAATATGCTATCT CCTGTTGATATCTTTGTCACAACTGTAGATCCAATAAAGGAACCTCCTCTAGTTACAGCCAATACTGTTCTTTCAATCTT GGCCTTGGATTATCCTGCTCACAAAATCTCATGCTACGTTTCTGATGATGGAGCTTCCATGCTCACCTTTGAAGCTCTTC AGGAAACTGCTGAATTTGCTCGAAAGTGGGTACCTTTTTGCAAAAAATTCTCTGCAGAACCTCGAGCACCAGAGAGGTAC TTCTCACAGAAGATAGATTTTCTGAAGGATACGCTTCAGTCCACTTATGTAAAAGAACGCCGTACTATGAAGGTAAGAAG TAACCCTATTCAATGCCCCAATTTTTTTAAGAATATTATGCTTCAGCAGTTGTGAAGAACCAAGTTTCATTGCTTCATGG TACTTACTTGGCAGAGAGAATATGAAGAATTTAAGGTGAGGATAAATGCACTTGTAGCAAAATCCTTGAGAGTTCCCCCA GAAGGTTGGACTCTGAAAGACGAGACACCATGGCCAGGAAACAATACAAAAGATCATCCAAGCATGATACAAATCCTTCT TGGTCATAGTGAAGGCCATGAAGGTAATGAGCTTCCATGTCTTATCTACATTTCTCGAGAGAAAAGGCCAGCATTTCAGC ATCATAGCAAAGCTGGTGCAATGAACGCCTTGGTAAACATTCCCAAAACCTTCTCGTCCTATCTTTCAGATTATATTTTT CTCATTCTCATGAAGCTGAAGTAAGATTTTCTTCAACCTGAATTTCCAGCTTCGTGTATCAGCAGTGCTAAGCAATGCTC CTTTTGTGCTCAACTTGGATTGCAATCATTATGTGAATAACAGCAAAGTCGTGCGAGAAGCTATGTGTTTCTTTATGGAC ATACAATTTGGGAATAGCATTGGCTTTGTCCAGTTTCCACTAAGATTTGACAGCCTTGATAGGAATGATCGTTATGCCAA CAAAAACACTGTTTTATTTGATGTAAGTGCAACCATTTTAGCACTAAATTTTCTCTTTGATCTTGTTTTTTAAAATTCAT TTGAATGGAAATTTGATAAGGTACCCCCCCCCCTTCTCTGTTCTTTTTTCTGCAGATTAACTTGAGGTGCCAAGATGGAC TTCAGGGACCTGCTTATATTGGCTCAGCATGTATCTTCAGAAGGAAAGCTTTAAATGGCTTTGATCCTCCAAAGGCTTCA AAACGCCAACGAGAAGTACAAGTGCACTCAAAACAGGATGAAAGTGGAGAGGATGGAAGCATAAAAGGTGAGCAAAATCC TCCATGATTTTACATAAATGCAAAAACAAATTTCTTTTCCCTTTCCATGTCTACAACTTCTGTTCTTTTTTCAGAAGCAA CAGATGAAGACAAGCAGCTATTGAAGTCACATATGAATGTTGAAAATAAATTTGGGAACTCTACACTTTTTATGAATTCT TCATTAACAGAAGAAGGTGGTGTTGATCCATCTTCAAGTCAGGAAGCTCTGCTTAAAGAAGCCATTCATGTCTTGAGTTG TAGATATGAAGATAGAACTCTCTGGGGATATGAGGTATGGTAGAAAAGATAAAACTTGATCATTTTTTTTTTGTTCTTTC TATCAAGTTCTTTGATTGAACAATCACATGTGGACACTTTATTCACCATTAGAAAAAACCAGTTTTTCTCCGTGTCCTTC CATATACAACTGAAACATGCTTGATCACATATTCACATTTGCCATTCACAGGTAGGTTTGAGCTATGGATCTATAGCAGC AGATGTTCTTACAAGTTTGAAGCTGCATTCTCGTGGCTGGAGATCTGTATACTGCATGCCAAAGAGAGCAGCATTCAGAG GCACAGCTCCTATCAACCTTACCGAACGACTTAATCAGGTGCTCAGATGGGCAGTGGGATCACTTGAGATCCTATTCAGC CGCCATTGCCCGATATGGTATGGCTTCAAGGAAGGAAGACTCAAGGGGCTCCAGAGGATTGCCTATATTAACAGCACTGT CTACCCCTTCAGCTCAATACCCCTCCTAATATATTGTCTCATTCCTGCCATTTGCTTGCTCACTGATAAATTCATCACAC CATCGGTAAAAAATTCCCTTCTAATAATTTATATTTATCATTGTTAATTTGGGCTTAGATTCTGTTAGGCCTACTGGTAG TTATCTTTTTAATATGGATCAAACACATTTAATATGGATATGGCTTTATCAAAAAGGAAGGTGTTATACCATTAGATAAT CTAATCATAACCTCTAACATGAGTGTCAGATACATTTAAAATGATCATGCTGGATTAAATGAATATTAATGCATGTTGCA AGGGTTGAATATCACGCATGTAAAATGAGTAAACATTAGACTGCATTCCCTAAAGATAATCTAGTTTCTTTGATGGTTTT GCAATGAATTTTTCTTGAGGTCTTTCAAAATGCTTCTCAAGTTCTTGTTATCAGTGATAAAAAAGTGCTAGCTATCAGAT ACGACTTGGCGGAAACATAGGCCTTTTAAGATTACTCTAGACACATGCAAAATTTATTTAAGCCGTTTCCTGAGGTCTTT GTAAATTCTTCTCAAGTTCTTGTTTCACTACTGATGAAGCCATTTCTCATTGTTTCACTGTCCAGGTAGACACTTTTGCA AGTATGATCATCATTTCCCTGTTCATCTCAATCTTTGGATCTGCTATTCTTGAGTTGAGATGGAGTGGAGTTAGCCTAGA GGAGTGGTGGAGAAGTCAGCAATTCTGGGTCATTGGCAGTGTGTCTGCACACCTCTTTGCCGTTGCACAAGCCCTTATGG GAGGCCTGGCTAAAAAAGTCAACAAAAACTTCAGTGTTGTATCCAAGGCCCCGGATGATGAAGAGTTTCATGAACTCTAC ACCATAAGATGGACAGCACTGCTAGTACCTCCAACCACAATCATAATAATCAACCTCATTGGTGTTGTAGCTGGTTTCAC AGATGCCATAAACAGTGGTGCACATTCTTATGGAGCACTGCTTGGGAAGCTCTTCTTTTCTTTATGGGTTATTGCTCATC TCTATCCCTTCCTTAAAGGTTTGATGGGTAGGCAGAACAGGACACCTACTCTTATTGTCATATGGTCTGTGCTTTTGGCT TCTATCTTCTCATTGGTTTGGGTAAGGCTTGACCCTTTTGTGTTGAAAACAAAGGGGCCTGATGTAAAGCAATGTGGAAT CAGTTGCTGA
CDS sequence (LotjaGi6g1v0201500.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGCTAGTACTAGACTATTTGCAGGGTCTCATAACAGCAATGAGCTTGTGGTGATCCAAGGAAATGATGAGCCTAA GCAAGTGAAAAACTTAGATGGACAGCTTTGTGAGATATGTGGTGATTCTGTGGGACTTACTGTGGACGGAGACTTGTTTG TAGCTTGTGAAGAGTGTGGCTTCCCGGTATGCAGGCCGTGCTATGAGTATGAAAGAAGGGAAGGGACTCAAGGTTGCCCT CAGTGCCATACAAGATACAAGCGAATCAAAGGAAGCCCAAGAGTGTCTGGAGATGAAGATGAAGATGATGTGGATGATAT TGAACAGGAATTTAAAATGGAAGAAGAAAAGTACAAGCTCAAGCAAGAAGAGATGCTGCAAGGGAAGATGAAAGTGAATG GGGAGCTGCCCATATCTTCTTACAGCATTGTAGAACCTGCAGGTGGTGAAAAATTGGATGACAAGGAGAAAACAGATGAC TGGAAGTTGAATCAAGGCAACCTATGGCCTGAAACTGCTGCCCCAGTTGATCCTGAAAAGAACATGAATGATGAAACAAG ACAGCCACTCTCAAGGAAAGTAGCAATACCTTCAGGCAGACTCAGTCCCTATAGAATGATGGTGGTGACTCGGCTCCTCC TTCTACTACTCTTCATTCAGTATAGAATATTCCACCCAGTGCCCGATGCAATTGGACTCTGGTTAATTTCTGTAGTATGT GAAATCTGGCTTACATTGTCATGGATAGTTGATCAGCTTCCCAAATGGTTTCCCATTGACCGCGAGACATACCTTGATCG CCTTTCAATCAGGTTTGAACCGGAGAACAAGCCGAATATGCTATCTCCTGTTGATATCTTTGTCACAACTGTAGATCCAA TAAAGGAACCTCCTCTAGTTACAGCCAATACTGTTCTTTCAATCTTGGCCTTGGATTATCCTGCTCACAAAATCTCATGC TACGTTTCTGATGATGGAGCTTCCATGCTCACCTTTGAAGCTCTTCAGGAAACTGCTGAATTTGCTCGAAAGTGGGTACC TTTTTGCAAAAAATTCTCTGCAGAACCTCGAGCACCAGAGAGGTACTTCTCACAGAAGATAGATTTTCTGAAGGATACGC TTCAGTCCACTTATGTAAAAGAACGCCGTACTATGAAGAGAGAATATGAAGAATTTAAGGTGAGGATAAATGCACTTGTA GCAAAATCCTTGAGAGTTCCCCCAGAAGGTTGGACTCTGAAAGACGAGACACCATGGCCAGGAAACAATACAAAAGATCA TCCAAGCATGATACAAATCCTTCTTGGTCATAGTGAAGGCCATGAAGGTAATGAGCTTCCATGTCTTATCTACATTTCTC GAGAGAAAAGGCCAGCATTTCAGCATCATAGCAAAGCTGGTGCAATGAACGCCTTGCTTCGTGTATCAGCAGTGCTAAGC AATGCTCCTTTTGTGCTCAACTTGGATTGCAATCATTATGTGAATAACAGCAAAGTCGTGCGAGAAGCTATGTGTTTCTT TATGGACATACAATTTGGGAATAGCATTGGCTTTGTCCAGTTTCCACTAAGATTTGACAGCCTTGATAGGAATGATCGTT ATGCCAACAAAAACACTGTTTTATTTGATATTAACTTGAGGTGCCAAGATGGACTTCAGGGACCTGCTTATATTGGCTCA GCATGTATCTTCAGAAGGAAAGCTTTAAATGGCTTTGATCCTCCAAAGGCTTCAAAACGCCAACGAGAAGTACAAGTGCA CTCAAAACAGGATGAAAGTGGAGAGGATGGAAGCATAAAAGAAGCAACAGATGAAGACAAGCAGCTATTGAAGTCACATA TGAATGTTGAAAATAAATTTGGGAACTCTACACTTTTTATGAATTCTTCATTAACAGAAGAAGGTGGTGTTGATCCATCT TCAAGTCAGGAAGCTCTGCTTAAAGAAGCCATTCATGTCTTGAGTTGTAGATATGAAGATAGAACTCTCTGGGGATATGA GGTAGGTTTGAGCTATGGATCTATAGCAGCAGATGTTCTTACAAGTTTGAAGCTGCATTCTCGTGGCTGGAGATCTGTAT ACTGCATGCCAAAGAGAGCAGCATTCAGAGGCACAGCTCCTATCAACCTTACCGAACGACTTAATCAGGTGCTCAGATGG GCAGTGGGATCACTTGAGATCCTATTCAGCCGCCATTGCCCGATATGGTATGGCTTCAAGGAAGGAAGACTCAAGGGGCT CCAGAGGATTGCCTATATTAACAGCACTGTCTACCCCTTCAGCTCAATACCCCTCCTAATATATTGTCTCATTCCTGCCA TTTGCTTGCTCACTGATAAATTCATCACACCATCGGTAGACACTTTTGCAAGTATGATCATCATTTCCCTGTTCATCTCA ATCTTTGGATCTGCTATTCTTGAGTTGAGATGGAGTGGAGTTAGCCTAGAGGAGTGGTGGAGAAGTCAGCAATTCTGGGT CATTGGCAGTGTGTCTGCACACCTCTTTGCCGTTGCACAAGCCCTTATGGGAGGCCTGGCTAAAAAAGTCAACAAAAACT TCAGTGTTGTATCCAAGGCCCCGGATGATGAAGAGTTTCATGAACTCTACACCATAAGATGGACAGCACTGCTAGTACCT CCAACCACAATCATAATAATCAACCTCATTGGTGTTGTAGCTGGTTTCACAGATGCCATAAACAGTGGTGCACATTCTTA TGGAGCACTGCTTGGGAAGCTCTTCTTTTCTTTATGGGTTATTGCTCATCTCTATCCCTTCCTTAAAGGTTTGATGGGTA GGCAGAACAGGACACCTACTCTTATTGTCATATGGTCTGTGCTTTTGGCTTCTATCTTCTCATTGGTTTGGGTAAGGCTT GACCCTTTTGTGTTGAAAACAAAGGGGCCTGATGTAAAGCAATGTGGAATCAGTTGCTGA
Protein sequence (LotjaGi6g1v0201500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEASTRLFAGSHNSNELVVIQGNDEPKQVKNLDGQLCEICGDSVGLTVDGDLFVACEECGFPVCRPCYEYERREGTQGCP QCHTRYKRIKGSPRVSGDEDEDDVDDIEQEFKMEEEKYKLKQEEMLQGKMKVNGELPISSYSIVEPAGGEKLDDKEKTDD WKLNQGNLWPETAAPVDPEKNMNDETRQPLSRKVAIPSGRLSPYRMMVVTRLLLLLLFIQYRIFHPVPDAIGLWLISVVC EIWLTLSWIVDQLPKWFPIDRETYLDRLSIRFEPENKPNMLSPVDIFVTTVDPIKEPPLVTANTVLSILALDYPAHKISC YVSDDGASMLTFEALQETAEFARKWVPFCKKFSAEPRAPERYFSQKIDFLKDTLQSTYVKERRTMKREYEEFKVRINALV AKSLRVPPEGWTLKDETPWPGNNTKDHPSMIQILLGHSEGHEGNELPCLIYISREKRPAFQHHSKAGAMNALLRVSAVLS NAPFVLNLDCNHYVNNSKVVREAMCFFMDIQFGNSIGFVQFPLRFDSLDRNDRYANKNTVLFDINLRCQDGLQGPAYIGS ACIFRRKALNGFDPPKASKRQREVQVHSKQDESGEDGSIKEATDEDKQLLKSHMNVENKFGNSTLFMNSSLTEEGGVDPS SSQEALLKEAIHVLSCRYEDRTLWGYEVGLSYGSIAADVLTSLKLHSRGWRSVYCMPKRAAFRGTAPINLTERLNQVLRW AVGSLEILFSRHCPIWYGFKEGRLKGLQRIAYINSTVYPFSSIPLLIYCLIPAICLLTDKFITPSVDTFASMIIISLFIS IFGSAILELRWSGVSLEEWWRSQQFWVIGSVSAHLFAVAQALMGGLAKKVNKNFSVVSKAPDDEEFHELYTIRWTALLVP PTTIIIINLIGVVAGFTDAINSGAHSYGALLGKLFFSLWVIAHLYPFLKGLMGRQNRTPTLIVIWSVLLASIFSLVWVRL DPFVLKTKGPDVKQCGISC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 977 | 977 | 0.0 | – | |
| PANTHER | 1 | 977 | 977 | 0.0 | – | |
| Phobius | 1 | 207 | 207 | - | – | |
| Gene3D | 20 | 110 | 91 | 1.2E-42 | ||
| SUPERFAMILY | 22 | 105 | 84 | 3.65E-36 | – | |
| Pfam | 27 | 104 | 78 | 2.3E-39 | ||
| CDD | 35 | 85 | 51 | 3.88123E-32 | – | |
| Coils | 104 | 124 | 21 | - | – | |
| Phobius | 208 | 224 | 17 | - | – | |
| Phobius | 225 | 229 | 5 | - | – | |
| Phobius | 230 | 250 | 21 | - | – | |
| Phobius | 251 | 716 | 466 | - | – | |
| Gene3D | 273 | 380 | 108 | 7.7E-6 | ||
| Pfam | 284 | 973 | 690 | 0.0 | ||
| SUPERFAMILY | 296 | 797 | 502 | 4.5E-12 | ||
| Coils | 382 | 402 | 21 | - | – | |
| Gene3D | 425 | 574 | 150 | 7.2E-11 | ||
| MobiDBLite | 574 | 602 | 29 | - | – | |
| Phobius | 717 | 737 | 21 | - | – | |
| Phobius | 738 | 756 | 19 | - | – | |
| TMHMM | 755 | 777 | 23 | - | – | |
| Phobius | 757 | 777 | 21 | - | – | |
| Phobius | 778 | 788 | 11 | - | – | |
| Phobius | 789 | 807 | 19 | - | – | |
| TMHMM | 789 | 811 | 23 | - | – | |
| Phobius | 808 | 826 | 19 | - | – | |
| TMHMM | 824 | 846 | 23 | - | – | |
| Phobius | 827 | 847 | 21 | - | – | |
| Phobius | 848 | 873 | 26 | - | – | |
| Phobius | 874 | 896 | 23 | - | – | |
| TMHMM | 874 | 896 | 23 | - | – | |
| Phobius | 897 | 907 | 11 | - | – | |
| TMHMM | 906 | 928 | 23 | - | – | |
| Phobius | 908 | 928 | 21 | - | – | |
| Phobius | 929 | 939 | 11 | - | – | |
| Phobius | 940 | 960 | 21 | - | – | |
| TMHMM | 941 | 960 | 20 | - | – | |
| Phobius | 961 | 979 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Cellulose synthase (UDP-forming) activity | Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1). | ||
| Biological process | Cellulose biosynthetic process | The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. |
Expression pattern of LotjaGi6g1v0201500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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