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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0205500 |
| Transcript ID | LotjaGi6g1v0205500.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vesicle-associated membrane protein; TAIR: AT5G58060.1 SNARE-like superfamily protein; Swiss-Prot: sp|Q9ZRD6|YKT61_ARATH VAMP-like protein YKT61; TrEMBL-Plants: tr|I3T6A4|I3T6A4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0205500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:50277359..50280613) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAGATCACGGCGTTGCTGGTTCTAAAATGCCCCGGCGAGGGTTCCGATCCGGTGATTCTGGCCAACGCGTTGGATGT CAGCCACTTCGGTTACTTCCAACGATCTAGCGTCAAGGAGTTTATCGTCTTCGTTGGTCGCACCGTCGCTAGCCGCACCC CTCAGGGTCAGCGTCAATCCGTTCAGCATGAAGGTATCATCAGCAAATTCCCTCGCCTTAGGGTTTCGTTTTCCCAAATT CTTGTGATCTGGATCGGATTCCTGTTTTCTTGTGATTTTATAACCGTTTTTTAGGTTGCAGCAAAGCGTGATTATGGAAA TTTTGATTGGTTTGATAATTGACATGTAATCAATCGTTTTTTGGTTATGAAATTGTGAAGGTTGGGGAATCTGATTCGGT TTTGTTGATTTTGCAGAGTACAAGGTGCATGCGTATAATAGGAATGGCCTTTGTGCGTTGGGATTTATGGATGATCACTA CCCTGTTCGGAGTGCATTCTCTCTTCTCAACAAGGTGAGAGTTAGAGTTGTGTGTTTCGGTTTATGGGTGTAACATTTAT GATATATACAGCATGTCATGTTTGAAGCAACCTTGTGGTAGCTTGTTTTGTGTTTTGCAGCTTCCTTTATTATTAGCTTA TGGTATAGGACTGGCTTCTTTATGTTATCGCAGTGGCAGTGTTGTCCAATCGCAATCGCGGACCATGGCTCATCCGCTAT TTAGCAGCGAATAACGGGAATAGCGCGCTATAGTGGGCAATAGCGGCGTCGCGATTAGCCAAAAATCCGCTACGCGCCGC TATTTGATAACACTGCGCAGCGGAGATTAATTAGATCATGCTTTCTTACTTTGTAACATAAGGTTATTGACATGCAACAA TCAAGTCTTTTTCTTACTAGGCTGGGTTAGCTACATAAAACAAACAACGCATTAATGTTATCTTTGTGCACCATAATGCT CTTTCATATATTAAGTTTACAAATAGATCCTTTACCTCTATATCTCTCAATAGTTGACTTATAGTTTTCTTGGGGTGTCC GTGTCTCTATCACCGATATCCTTTGTTTGGTCTAGCCTCCTTACTGGAGCTTCCATGAGTCTTAACATAAAAACATTGAC ATCTGAAAAAAATATTTTGCTGTTTCAATTTTTGGTTACTTGCATTGTCAGTTGTGTGATGATGGATGGAACTACTCGTT AGAGGTGTATTATATTTCACTGTTTGAGGCTCTCTGGACTCTGAGTAATTTGCCCATTTTATCTTTCCATGAAAAATTAG GAAGGTTTTGTCCACGATGGTATTTGATAAATATGCCTTTGGTATTTCTGATGATAATATAATTATGAAGGGATCTTATG TTTTAGTTATTTGATTTATGGAGATCCTCTTGACAGAGGCTGACCCTTTTTTTCCAGTTTATCTCTGTTTACTGACATGG TATCATACTGATCGTGGTTATGTTTCACTCCCTTGTGGTGAACATGCCCACTATGGTAACCGTCAAATCAATTCTGACTG CTTAGTTTCTAAATTTTGGGGTCTAGGTCTCATGTTTTAATTCTAGCTACCAGCAATATGAATGCTTTGTATTGATTCCA AATCCGCTGAAATCATGAATATAGTTGGTTTGTCAAGAATGATGTAATTTTTCTTTGTATCGCCCAATTAGCATGTCGTT TTTTCCTTTGCGCATTGGCTCTCGTATGTGACATTCCTTGCTGGACATTACACTGCTCAGTTTTGATGGAGTTACCGGAT CTCGTGTCTAAGCCTCTTTTGCCCTTTGCTTGTCTCTCAGTGTCTTTGTGCCTGACTGCCTATGCTCCATACCAGTCTGC ACCATAACAAAATGATTAATACTCCCCCCCCCCCCTCCCCCCAAAAAAAGCATGCAAGCCACTTAGAAGTATTTGCCTTT TGGTGTTAAGGAAGTTGAAATAATTGATGCATTGCCTTTTACAATTTGTGATGCATGTCATTTCTTGATTTATGAGATGG TGAAAACATATATCTTGCTTTTGCTTGCAGGTACTAGATGAATATCAAAAAAGTTTTGGCGAGTCATGGAGAAATACTCA GGCAGACAGTACTCAACCATGGCCCTATTTGAATGACGCTCTGACAAAATTCCAGGCATGTAAATACCTCTTCTTCATTA TATTAGCTTCAGCTAGTGGAGAACTTGTTTGTATTTTATTATAAAAGTTGTGTACTGTTCAAGTTTGTGTTAAAGAAGTT TTTTTTTTCTGTATAGTAACCTTTTCAAATGATTACTTTTGATTCAAACCCCTGTTTACTTGTTTATGTCAAATCTTCAG GACCCTGCAGAGGCTGACAAGTTGATGAAAATCCAGAAGGAGTTGGATGAAACAAAAATCATCCTTGTAAGTATTAAGTT AAACATGCATTACTTTATATTTGCAAAACAGGATGGGTTCCCTGCATATTTTTCCTTCTAAATCTACTTCTTATCAGTTA GTCATGTAGTATTGTAGTTATTAAGTTTTAAACTGTGGTATGCTTGGTAATTTTCTAAATGAAATATTTGTTTGTTTGAG AATTTGGCATCGGTTTCGAAATACCGCTTTAGATGACAATGCCAGCGTCATGCCAATGCAAGTCAAGCATTACTCTAATG GAGACAAATATAATGCACTAATGCCAATTTATCATATCTCAGCATCTTTGTGCGATGTCCTAGATTTTATATAAGGCCGT TATATAATGTCTGTCTGCAGTTCAACAATCACTATGTTCCTATTTTATTTTATTTTTTTCAATTATGCTGGTGTTTCAGT TTTTCTTATTAGTATACAATTACTTGGTCATGTGAAGTTTACTTGGTAGACACAGTTTTACCATTTTATGTGTGTTTTTG ATGACAACCAAAAATAGAAAATTCTAATGTTCTTGGACTTCTTGATCTTCAAGTGTCCCCCTTTGGTTGTCATCTTCAAG TGTCCCCCTTTGGTTGTCATCACATTTCCTCCTACACTATGTGTAGGCTCTCTTTGTGTTATTTGGCATGTAGATTTTTG AGAACCACATCACTCACTCGGTGAATTGTTTATTTGCTTTTCCCTGACCATATAAAACTTTCAATTTATTAACAGCATAA GACTATTGATAGCGTGCTTGCACGAGGAGAGAAGCTGGACAGTTTAGTTGAGAAGAGTTCTGATCTGAGTGCAGCATCAC AGGTACACTAAGACAGCCCCTGCTCTACAGCTATGTATTTGTTAGTGGCATGTGA
CDS sequence (LotjaGi6g1v0205500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGATCACGGCGTTGCTGGTTCTAAAATGCCCCGGCGAGGGTTCCGATCCGGTGATTCTGGCCAACGCGTTGGATGT CAGCCACTTCGGTTACTTCCAACGATCTAGCGTCAAGGAGTTTATCGTCTTCGTTGGTCGCACCGTCGCTAGCCGCACCC CTCAGGGTCAGCGTCAATCCGTTCAGCATGAAGAGTACAAGGTGCATGCGTATAATAGGAATGGCCTTTGTGCGTTGGGA TTTATGGATGATCACTACCCTGTTCGGAGTGCATTCTCTCTTCTCAACAAGGTACTAGATGAATATCAAAAAAGTTTTGG CGAGTCATGGAGAAATACTCAGGCAGACAGTACTCAACCATGGCCCTATTTGAATGACGCTCTGACAAAATTCCAGGACC CTGCAGAGGCTGACAAGTTGATGAAAATCCAGAAGGAGTTGGATGAAACAAAAATCATCCTTCATAAGACTATTGATAGC GTGCTTGCACGAGGAGAGAAGCTGGACAGTTTAGTTGAGAAGAGTTCTGATCTGAGTGCAGCATCACAGGTACACTAA
Protein sequence (LotjaGi6g1v0205500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKITALLVLKCPGEGSDPVILANALDVSHFGYFQRSSVKEFIVFVGRTVASRTPQGQRQSVQHEEYKVHAYNRNGLCALG FMDDHYPVRSAFSLLNKVLDEYQKSFGESWRNTQADSTQPWPYLNDALTKFQDPAEADKLMKIQKELDETKIILHKTIDS VLARGEKLDSLVEKSSDLSAASQVH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 138 | 138 | 1.8E-51 | – | |
| PANTHER | 1 | 184 | 184 | 4.2E-100 | – | |
| SUPERFAMILY | 1 | 139 | 139 | 3.2E-43 | ||
| Phobius | 1 | 2 | 2 | - | – | |
| Phobius | 1 | 15 | 15 | - | – | |
| Phobius | 3 | 11 | 9 | - | – | |
| CDD | 5 | 131 | 127 | 5.93074E-35 | – | |
| ProSiteProfiles | 7 | 123 | 117 | 22.18 | ||
| Phobius | 12 | 15 | 4 | - | – | |
| Phobius | 16 | 185 | 170 | - | – | |
| SMART | 45 | 127 | 83 | 1.7E-24 | ||
| Pfam | 48 | 114 | 67 | 9.0E-12 | ||
| SUPERFAMILY | 132 | 183 | 52 | 2.88E-14 | – | |
| Pfam | 137 | 183 | 47 | 3.1E-11 | ||
| ProSiteProfiles | 139 | 185 | 47 | 13.364 | ||
| Gene3D | 142 | 185 | 44 | 4.1E-21 | – | |
| PRINTS | 144 | 163 | 20 | 6.6E-5 | ||
| ProSitePatterns | 157 | 176 | 20 | - | ||
| PRINTS | 164 | 183 | 20 | 6.6E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi6g1v0205500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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