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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0207800 |
| Transcript ID | LotjaGi6g1v0207800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Homeobox protein knotted-1, putative; TAIR: AT5G25220.1 homeobox protein knotted-1-like 3; Swiss-Prot: sp|P48000|KNAT3_ARATH Homeobox protein knotted-1-like 3; TrEMBL-Plants: tr|A0A0H3WB94|A0A0H3WB94_PEA Class II knotted-1-like 10 homeobox transcription factor; Found in the gene: LotjaGi6g1v0207800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:50547983..50553353) extracted from Lotus japonicus Gifu genome v1.2.
TTGGCACCATATCTTAATATAATTAATGGAATAGACTAACAGGAAATCGACACAAAACATTGTTTACAGTTGCAACTAGC AGTATAGACAATTAATTAATTAAACAAACAAATATTATATTATTAATTAAAATGATTAGCTGCTAGCTGCCTCCAACAAA ACAATGTCATTGATGGATGAATCTTTGTCTTATTACACACCAAAATCAAATCAACCTCCAATAAGGTCGCACCACAAAAC CCCCTCCACGTACGTTATCACCAATCCCACCCTCCCCTCGATCTTCGTGTCCACATTTCAAAAAAGTCTTCAAAAGTGCT TTTCTAAACCCCTTCCTCCTTCCTTCTACTCCCTTCCACCGCCGCTCACTCCTTCTCTCTAAATTCTCCAAACCTCGCCG TGTTTCCGCCGCTTTTCTTTCTTCTTCCAATCTCAGTGTATCGTAACAGCAAATTGAATGTAAAAAAAAAGAGAGAGAAA AACAGAAGAATTGTGAACCAAATTAGCAAGTTCATCAAATGGCTTATCACGACCATCTATCACACGAGATCAGTTTTCAG CAATTCACGGACGACCAGCAGATGAGTCATCAAGGAAGAGACATGCAGCAGAGGATGATGCCGCTCTCAGCCCCCGGCGG AGGAGCGGCGCCGACGTGGCTCAACAACGCGGCGGCGCTCCGGCAGCAGAATTTCCTGCATCTCCAGCCGGACTCCGCGG CGCAGAACGACGACGTGGTTCGGGGCCTGATGGAGAAGAGCGGCGGCGATCGAGACCACAACCACAACGGCGAGTCGGAG GACTTGGCGGAGTATAAGGCGGACATTCTGGGACATCCGCTGTACGACCAGCTGCTGTCGGCGCATGTTTCGTGTTTGAG GATCGCGACGCCGGTGGACCAGCTTCCTCGGATCGACGCGCAGCTGCAGCAGGCGCAGCGCGTGGTGGACAAGTACTCTC GCCTTGGGAATGGTGTGGTGGATGAGAAGGAGCTAGATCAATTCATGGTATTGACCTTCTTCTATCACATTAGTATTATC CAGAAAAACTATTCTATTCTAATCATAATTATTGTCCCACTACTTTAATCTTAATCTGCTTTACTAGGAATTGAATGATT GATTTAATGCTGTGTTTGTTTGTTTGTATATGGTTATCCAGTTTAACCTAATTGTGTGTGTGCTCCTTTGTGTATAGTAT AGTACTAGTATTAACTATTAAACTCTTTTTGAGTGTGTCAATTTGCTGTTATTAAACAGTTGTTGTTTATTTACTCTTGC TTAGTAGCTTTGGGTGCTTTCAGTAAATTTTTAGCCCTTTATACTGTAATCTGATCTTCGTTTCCTGATTTTTCGGAGTT TGTTGTTTAAAGTTTACAAAATAGTAAAAGGTTGTACACTGTGGACTAGGGTAGATACAGCGATATGATTGTAGCTGCTT CTTGCAGAGTTTAGGACAGACGGGAGATTTTAAAAGAGCAAAAAAATAGAAAAGAGGATTATGGGGATTGGGGAATGAAA CAAATTTTTTTTTCAAAAATGATTGGTATGCACCTCTTAAGTGTGGACATTTTGAGTGAGATATGAAAAGAAAAGAGATA AATGATTAATGTGATATATGATTGATATATGTTCTCAAGTCTCAAGAGAATTTTGAGTGTCAATTCTAATTCTAATGTTG TGTTTATCTCTCTTTATAAATATTTAAAAAATTTATCTGTGAAAAGAGAGATACACAAAATTGCAACTTAAAGAAAGTTA AAAGAGTTTACACTTGAGATGATTATAATCCTATGATATATAATGGGGTGTGATAAAATGAGAGTGGTGAGAGAAAAATA AGAAGGTGGTGTGTTGTCATAGTTTTTTTTTACCACAAAAGATATTTTATTTGGTAAAAAAGGTGCCACCAACCAAAAAA TTATAGGGATTCCATATAGCTGAGTGGTGATTAGTGGTAATTGTTCATAAATCGAGTTTTTTTAATGTTGTAATGTAGTA TGACTTTAGAACAGTTAACTATGAGATGTTAACTATGAGATGATCAGATTCTCTTTAGTAATTTAACAATGTTAATTGAA ATATTGTGCGTATCTTTCTTCATAAACAATTAAAGACTCAATTTATTTATAAAAAAAAAACTTGTAAGAGAGAACAAACA AAATTTCAATTTAAAAAAACTTGAGATATCTTTATCCACTGCAAAGTTTTTAATAATTGTCTTGCAGTGGACGGCAGTTG TTGGATCAAATAATTGTCTTGCAGTGGACGGCAGTTGTTGGATGAATTTATTAAAACATAATTAAATTGATTCATTTTCA ACGATCATTGCCAGTTTAATTATTTTATGGCAAGGTCCTTAATTAATAAATGCTGCTTTAATCTTTGTTGTGTAGACGCA TTATGTTCTGCTGCTGTGTGCTTTTAAAGAACAATTGCAACAGCATGTCCGTGTTCATGCCATGGAAGCTGTTATGGCTT GCTGGGAGCTCGAGCAGTCTCTACAAAGCTTGACCGGTAAGTTTCAAGTTCATTTCAACAATCACTACATTAAAATCTCT ATTTGAACCCTTTTGAAGCTGTTATAAATAATCTGTGTATGGTGCATGAACTGAACAGGTGTATCTCCGGGTGAGGGAAC GGGTGCAACAATGTCTGATGATGAAGAAGACCAAGCAGAGAGCAATGCTGCCAACTTATACGAAGGAAGCATGGATGGTG CTGATAGTCTCAGCTTTGGGCCTCTTGTTCCCACTGAAAGTGAAAGGTCTTTGATGGAGCGTGTGAGGCAGGAGTTGAAG CATGAGCTCAAGCAGGTATATATATCACATAGTATATATGCATGCATGTGACATGTATCTTTTCATTGCAATGCATTAGT ATATAGGAATATTAGTTTACATGATTGATTTCATTTGTCTATTGTTGGATGGATCTGCAGGGTTACAAGGACAAGATTGT GGACATAAGAGAAGAAATTCTACGAAAGAGAAGAGCTGGGAAGCTCCCTGGCGACACCACCTCCCTTTTGAAACAATGGT GGCAGTCACATTCTAAATGGCCTTATCCAACTGTAAGTTCATTTTCACATCAATATAGTAAGGCAAAAGTTAGGTTCACA CCACTTGGTCTCACTTTCATCAAGGGATAAAAGAAGAACTAAGAAATAAAAGATGTTATATGCGATGTGATATAAAAAAT ATATATAAACAGATCGAGCTAAGAATAAGAAGTAGGTGAAATGAGATGAAAGAAAAACGTAAAAGAATGAAAACCATATA ATAATGACTTAATATTTAGCCATGTTCATTGTCTAATAACATTTGGTAGGTGTAGAATGCGATATTAATACATTAACCGT AAAATATGTTTTTATTTTGATGATCATACAAAATAAATTTAATTAATTCAATTATTTAAATGTACATATTTAAGTAATAA ATGCTACAAGGAGTATGTTTTTTTGTGAATTCATATTCTAATAAATGTATTATATATTTTAAATAATGTACTTATAGGAT AATATATACTTTTAATCCTTGTTTAGTTTATGCGTTAATGTCATGATATGACGGTCACCGTGATAGTCGATGTATAGACC ATTATTTTCATCTTTATATCTAGAGATAGTGTGGAAGAGACAACTATGACTGATCATGAATATTGAATTGAGTAGCACAC AGTAAAAGATGAATTGCCCTAAATAATGTACCTAACTAATTAAGAATTGATCTACGTATGTTGATTGTTGTTGGTGGGTA CTTGTCTTTTCCATGATTAATATTGATTGCTGAATGCTAATCCTTTTAACTAAGTAGTAGTTGCACTTGCACTCACTGCA CTGGTGAATGTGAATGTTGTTTAGGAAGAAGACAAGGCAAGGCTGGTGCAGGAAACAGGGTTGCAATTAAAGCAGATAAA CAACTGGTTCATTAATCAAAGAAAAAGGAATTGGCATACCAATCCTTCCTCTTCTACTGGTGCCGGAACCAAAACCAAGC GCAAGAGGTTGGTTTCTACTAGTTGATTATCTTTGCTCCAAATCACATATTAATTTTAATGTGTTGAATCTAAAAAAATT ATTGTTACTTTTTGACAGTAGTGGTGCAGGTGAAACAAGTAACCAGAGCTTCATGTAAATGATTGATACCTGGTTTGAAC AGAGGAAAAGGACTATCTCTATATTAATCTCCATTTTGTGCATGTAACAATGGTGGGGTTCAAAGTGGAATTTAATTTAT ATATGATATCATCAGTCACTGTTTAGAAATAGTATTGTTGTACTTGTATATGACGCTGCAGCTTGATAGTCCTACCTGGT ATTGTTGCAGCGTTTAAAGGGTATCTAAGAATGCATGCATGGTGATTCCTATTTATATATTTGTAACGCATTACACTGAA ACAATTTTTGAAAGAAAGGGGAAAATCCATGAATGTGCATGCTGCAAGTTTCGTGATCATTTTTTTAAGTAATTTTATAT GTACAAAGTACAAACAATGCCGCTCCTAATTCGAAAGAAAATATATAATCTTTAGGAATATTATTTTGTTCACAACTCTT ATTGAGATGAAAGAGGTGAAGGAATGAGAGAGATTGATAAGGAAGAAAAGAGAAAGATAGGATCGTGATTTGATTGAAAA AGAGATAAATAAATAAAAAATTAAGTAACAAATAAGTAGATGTATGAATGAACCATAACTCTAATTTCTACGGGTCATAC ATATACCACCCTCTTTCTCTTCTTTTTCTATAATTGTTGAAAATATGGTTTGATAAAATCTGAGACAGGTTTATTTTCAA GTAATATATGTGTGCTGTTTTTACAATTCGTTCAACATACATACACCTTTTTAGCGGTATTTAGCCGCTGCAAGCAATAG CGGTGGTTAAAAACCACCATCAAGCTGTATGTTCAAAGATGTCCGTGAAAACATCCTAAATTGTATTAGGACCCCACCCC CACAAACCACTTCTCGCCTTAGGACTTGGGCATGCCCACCTCCATTCTCCAATAGCACCCCTTGGAAGCTCTGCAGTTGG ATAGAGTGGTGATGCCTTAGATATGGTGGAAGCTATGACGGTGGAGGTGAAGCATATGGTGGTAGCTTGGATAGTGGTTA TCATCGTGGATCTCGTTACTCTAGTGGTGAAAGTTGGAGAGACTAGGGTTAAGGGAGCGTTGGAGAAAGAAGGAGGTGGT GAATAATTAGTTGAACTAAAAGGGAGGAGTTTGCTTCAGTTGAACTAAACTAGTTATGATTAGTCAATATGCTAGTTTTG GGCTAAATGTTTAATTTATCTAAAGAGGTGAGCAACATTGTGTTGAATTTTGGGCTTTGGCCTATTTCCTTGTGGGCTTG GTCCTATAATA
CDS sequence (LotjaGi6g1v0207800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTATCACGACCATCTATCACACGAGATCAGTTTTCAGCAATTCACGGACGACCAGCAGATGAGTCATCAAGGAAG AGACATGCAGCAGAGGATGATGCCGCTCTCAGCCCCCGGCGGAGGAGCGGCGCCGACGTGGCTCAACAACGCGGCGGCGC TCCGGCAGCAGAATTTCCTGCATCTCCAGCCGGACTCCGCGGCGCAGAACGACGACGTGGTTCGGGGCCTGATGGAGAAG AGCGGCGGCGATCGAGACCACAACCACAACGGCGAGTCGGAGGACTTGGCGGAGTATAAGGCGGACATTCTGGGACATCC GCTGTACGACCAGCTGCTGTCGGCGCATGTTTCGTGTTTGAGGATCGCGACGCCGGTGGACCAGCTTCCTCGGATCGACG CGCAGCTGCAGCAGGCGCAGCGCGTGGTGGACAAGTACTCTCGCCTTGGGAATGGTGTGGTGGATGAGAAGGAGCTAGAT CAATTCATGACGCATTATGTTCTGCTGCTGTGTGCTTTTAAAGAACAATTGCAACAGCATGTCCGTGTTCATGCCATGGA AGCTGTTATGGCTTGCTGGGAGCTCGAGCAGTCTCTACAAAGCTTGACCGGTGTATCTCCGGGTGAGGGAACGGGTGCAA CAATGTCTGATGATGAAGAAGACCAAGCAGAGAGCAATGCTGCCAACTTATACGAAGGAAGCATGGATGGTGCTGATAGT CTCAGCTTTGGGCCTCTTGTTCCCACTGAAAGTGAAAGGTCTTTGATGGAGCGTGTGAGGCAGGAGTTGAAGCATGAGCT CAAGCAGGGTTACAAGGACAAGATTGTGGACATAAGAGAAGAAATTCTACGAAAGAGAAGAGCTGGGAAGCTCCCTGGCG ACACCACCTCCCTTTTGAAACAATGGTGGCAGTCACATTCTAAATGGCCTTATCCAACTGAAGAAGACAAGGCAAGGCTG GTGCAGGAAACAGGGTTGCAATTAAAGCAGATAAACAACTGGTTCATTAATCAAAGAAAAAGGAATTGGCATACCAATCC TTCCTCTTCTACTGGTGCCGGAACCAAAACCAAGCGCAAGAGTAGTGGTGCAGGTGAAACAAGTAACCAGAGCTTCATGT AA
Protein sequence (LotjaGi6g1v0207800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAYHDHLSHEISFQQFTDDQQMSHQGRDMQQRMMPLSAPGGGAAPTWLNNAAALRQQNFLHLQPDSAAQNDDVVRGLMEK SGGDRDHNHNGESEDLAEYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQAQRVVDKYSRLGNGVVDEKELD QFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSDDEEDQAESNAANLYEGSMDGADS LSFGPLVPTESERSLMERVRQELKHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSLLKQWWQSHSKWPYPTEEDKARL VQETGLQLKQINNWFINQRKRNWHTNPSSSTGAGTKTKRKSSGAGETSNQSFM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| PANTHER | 1 | 373 | 373 | 6.5E-160 | – | |
| PANTHER | 1 | 373 | 373 | 6.5E-160 | – | |
| MobiDBLite | 13 | 29 | 17 | - | – | |
| SMART | 97 | 141 | 45 | 8.3E-18 | ||
| Pfam | 99 | 139 | 41 | 4.6E-17 | ||
| SMART | 148 | 204 | 57 | 4.6E-26 | ||
| Pfam | 154 | 203 | 50 | 1.7E-19 | ||
| MobiDBLite | 203 | 225 | 23 | - | – | |
| Pfam | 262 | 283 | 22 | 2.9E-5 | ||
| ProSiteProfiles | 262 | 282 | 21 | 9.969 | ||
| SMART | 262 | 283 | 22 | 5.1E-4 | ||
| Gene3D | 281 | 355 | 75 | 8.9E-23 | – | |
| ProSiteProfiles | 282 | 345 | 64 | 11.742 | ||
| SUPERFAMILY | 284 | 349 | 66 | 3.72E-16 | ||
| SMART | 284 | 349 | 66 | 2.2E-10 | ||
| CDD | 285 | 346 | 62 | 7.99575E-12 | ||
| Pfam | 302 | 341 | 40 | 1.0E-17 | ||
| MobiDBLite | 339 | 373 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi6g1v0207800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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