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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0209700 |
| Transcript ID | LotjaGi6g1v0209700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NEDD8 ultimate buster 1; TAIR: AT2G12550.1 ubiquitin-associated (UBA)/TS-N domain-containing protein; Swiss-Prot: sp|P54729|NUB1_MOUSE NEDD8 ultimate buster 1; TrEMBL-Plants: tr|I3T8K0|I3T8K0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0209700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:50733222..50739360) extracted from Lotus japonicus Gifu genome v1.2.
GGAAAATCTAAGTTAAATAATTTTTGTGCATATTAGATGCCTCCTTTTCCAAGTTATATCTTTTATTTTAATATATCATC TTATTCTTCTCCTATAAAACCTTTTTAGTAAACCTCTTTCTTAATTCCAAACCTGCATTACAATCGTTTTCACTCTCATT CTTTCCTGTTTCGATCATCACACTTCTCTCTGAAACTCTGCGCGATCATCATCAACCATGGCGAAATTGAAGATTGCAGG AACATGGTCAGGGATTCTCGAAGACGTAGAGTTGGAGGCTTGGACAATCGAAACGCTGCGTGAAGAGGTTGCAAAGCGAT CAAACTGTGCCGCTAACTCCATCAATCTCATCTGCGCCGGGAAGATTCTCAAGGACGCCGCCGATGGAACCCAAAACCTC GCCCAATTGGGTCTCAAGAACAACTCTAAGATCCTCGCTTCTCGCCTCGCCGATCAAACATTCATCGCTGAAGAAGAACG CTCTCGGAGGCTTGCCCGTATCAGGTGCGTTATGTTGTTGATGCAGTTCTCTTCAAATTTTGAAACTTTTCTTAGTTTTG GACTGACCCTTTTGTTATTGGAGTATTTCATTGTTTGTTGATTATGAAACATGATCATCAGAGAACGCCAAATTAGTCCT AACGTTAACTTTTGTCATAAAGTTAGTCTTTTTATGTGTTTGAATGATGAATCATTTAAATGTTGATCATGTTAGTCCTG CTAACTTCACAGTTCACATACAGGGGTGAAAATTTGATCACTTCAACAAGTATTGTTTTGGTCTATGGGTCAATGATAAT GTTACTTAATTTGCTGCTTAAAATTATGAAAACTACATCTCAAACCCTTGAAGTGGCGAAGGCTGATGATATAGTTGGAA AGAAAGTAGGTTAAGGTTACGAAGTAAGGTCAGCTGGTTAAGGAAAGCTCAGGTTATGAAATCGCTTAGCCATTAATTAA GTAGTAGTGAGGCGTCGGTATGGAGCCTTCCACTGTGGACCGAGACTACGCAAAGGTAGAAGACCATAGAAACTTCGCTG GGTTTATAATAAACCTTGATTTCGCTACGCTCAATAAGAGCCCGGAATAGTGGAGTTATTTGAATTTGGATGCTTTGATT ACTTAAAAAAGGTGTTGCTTTTTGTCGGGATCAATAATAATGTTATTTGATTTGTTCCTTAAAATTTTGAAAACTACATC TGAAACCCTTGAATTTGCATTTAATCATCAAAATCTTACAAGTTCCTGAATGTGTATCTTGTGAGTATAGTTATTCTCTG CTATTTGTCACATGATGACTAATTTAACTGAAAAAATGCATATGAACCTTAAGCATAATGATAAGTTCCTTCTTTTGGTG ACTAATTTGAGTATTTATTTTTCATTCTACTTTATAAGTATTTTCCCAATCATTATTTTCTTGCGAGTTACACTGGTACA CTGGTACTTTGAGGCAGTGGGTGTTGTCAAATAACGGTTATTGCAGCGCTATAGCATAGCACTATGAGGGCTCACTGGTA TTAGTCGCTATTTATCGCTATGAGGGTTTGAAATAGCGGATTTTTGGCTTTCTGCTATTTTCCGCGATCCACGATTAACA CTGGAGGCAGTTTAGATAAACTTCGCCATAAGCACTTATAGGAAAAGAAAAGTTTAAATAGGAAAAGAAAAGTAGAATTA ATCTTGTAATAATTATGTATTGTTTAAATAGTAGTTTCTCTTATAAGTTGAAATTAAATACTACACCTCCACTTTTTCAG AAGATTGCTCATCTAACTTGTTCATAAACACTTACAACTTATTAAGGCTTTTTTTCTTTAGTTAGGAAACAAATACCGAT ATCAATTGAAAAGCTTCCATAAGCGAGAAGTTAATCCAAAAGGGGCCTATGTGTGCATCACTACTTTCTATTAAGCTTAG TTGTATTTGGTGCAAACAGGACTGCTGTGTCTTCAATGGCTGAAAGGCATGCAGATGGTTCACTACCTCTTGAGGACTTC AACATAGAAGTTGAAGATCAAAGTGGGAAGAAAGTACGTTTGGGATCTGAGACTGATCAGAGGTATGTATAATATACCCA TGTGGCAATTCTATACATCTATAAGGTGAAAGTTTGTTTGAGTTTGTGGGTTTTAAGATCCAATATCCTGTTTTTACTAT TTAAGTGAGGTTCAATCTGTCATTTGGCAGGGCAGTAATGATGGGATTGATGCTTCATGCAAAGGGGAAGCGTCTTATCA GACAGGGAAATTACAAAGATGCACTTGAAGTGCTTATCATGGGAGAGGTTAGTTCCTACAAATATTCCCTAATTTTGATA AGATATATATATATATATATATATATATATATATATATATATATATATTTGCATATATGTTTTGCAAGTTGGTATAGGCC TGAAGCAGAATAATATGATCACCACTGGGCTCAATGTAATATGATGAATAGGCACTTTAACTTGTGACTTGTGAGCATTG TCCAATCTATGTAAAAGGCCTTCGTAACAGTATTTGCCAAGGAGTTTTCCGACATTATTTCTCTACTTTCTTTGATGTCT TTACCTCTTTCTTTAGACATTTAGATTAGGATTTTTCCTAAATTTATTGTTTTTATGTTACTGTGGCTGACTTCTTGAAT CTGCACTCATGGTCTTCCAAAATTTCACCAAATTTAGACTTCTCTTTTTCCTAATTTTTTGGTAAGTATTGTACTATTTC ATACAATTACTTTTAGAACTCAAGACCTATTTCATTTTGCAGGAGTCATTCTCTCTTTGTGATCCAAAAGTCATTGAGGT GAGTGATCCAATCTATACAATTCACGTTTAGGCAGCATATATGACAGAATTTACTTGGCAATTATATATTTGAGTAAGCC ATGGTGTAGTGCAATTGTATACTTATTTCAATAAAACTGATTATTCCTTTGTTTCCCCCGAATCTAATTGTCATTAGAAA TAGCCTTTTTCCTTCTAACTTTGCCCCAAGCATTTGCTTAAAGTTGTAGAATCACATAGGAAAAATAGTGTTGTTTAAAA AGACGGAGAAAAGTGTAGGATAGCAAGCAGTACAAGTAATGAAAAATTATGTTCTCCACCCCTGTCCCCCCTCCCAAAAA ACAAGAAATCCAAAAAATTTGCAGGGACAAAACTTGTGGCAAAGGTCTAATAATGTGTTTACTTAGCAACATGGTTCGTT CGTCTTGGTTTCTTTCAATATAATATCCTATAGGATTTGGCTCATCCAAAATGAAGGGTACACTTTAGACCGGAAAGTGT GAAGTTATAACCCTCAATAAAAAAATCAAGGGAGTGTTTTTAAGGATATCATAATTTGTTACAGATGTGAATGTATTTAT CACAAATTTAGTTTTTGTGGTTATAATAACGCTATTTCTTTTCTCTAAAGTGCAATCCTTACTTTAAAGGATCCTAATTC ACTCCTATATATGTTTTCATATCTGTTTAATTTACTTTGTGTCTTTTTGTCCATTCAGCTGATTGACAATGTTCCAATAC TGCAAATAGACATGGTGTGGTGCTACTTTATGATACGAGACATCCGATGTCTCTCAGATGCAGGAAAGCGTCTTGAAATG GCCAGGGCAGGAATTGAACGTGCTCATGGGAAGGATTCTCTCCGCCTCAGAATCTTACAAGGAGGTTGCTATCCAGAACT TGCATTGTGAGTTTTTCTGTTTATTGATTAGCTTTTTGCTTTAGGAATTCTCAAATAACTAGGATGCAAATACTCAATTC AAAGTAGATTAGTTCAGTACATATTTTCTCCAATCTGCGAGTAGATTAATTTTTAGGATTTCACGCGTAGGCATTTGAGG ATGGAGCTGCTTGAAGGGGTGGTGGCATATCATACTGGCCAATTGGAGAAGTCAAGAAATGTATTAGCTTCTGCAAGAGC AAAGTTTGCCCAGGTAGACTATGCTGATATAACGTGTTGATAAATTAAGTGAAAAAAGTCACATTTTACACATATTCTAT TTCCTGGTCTCTTTATTTAATCGTGTTGTTCGTTGGTAGCTGCCACATATATCATAATCTTTAATATGCAAGTTGAATGA TATTAAGATAACATCTTCTGAAGCTCCATCTTTTGTAGCATTAAGAAATCAGAGTTATGAATTTTGAAATTTCAAGGTAT CTTTTTAGATTTTGAGCATCCTTCTAGCTTCAGATGCTCTGAAATTGATTGATATATACAGTTTTGTTTGCTTCTCTATA CTACCCTGCCCCTGTTTTTCTCTTTCAAAGAAGATGGAATAAATACATAACGTCTAGCTGAATAGCTTGGTGTCACTTAC ATTACTTTCTACTCTCGTTAAAAACACTGCTCTATGTTTTTTGACAGCTGCAAGTGCCAGATGAAGCCTTATCACTTGTT ATGAGCATGGGCTTCAAAGAACGTGGTGCAAAGAGAGCATTGCGAATGAACAATCAAGATGTTGGGAGTGCCATTGATTT CCTTGTTGCAGAGAAGGCAAAGAAAATGCAAAAACGGGAGGAAGATATTCGGAGAAGAAATGAAATTAGGTTGGTGTACC TGTATATTGATTTTTTTAATTTTTGCATCTCTATTGGTTTCTAAATAGCTTTCTTCCAGGGAACAAAAGAGTTATGGAAT GACACCCTCAAAGAAAGCTGTGGATATAGATAGATTGAAGGAATTGGTCTCTATTGGGTGAGTGTTATTTTGGTATGGTA CTGTTGGTATTTGGTAATGTGTTAAGAGGCTACTTTATGATTTAAAATAACATTGTTGACAGGGAACACTAAGAACTTTT TCAGCTTTTACATGCCATTACATATAATTTATTCATGTTGCAGCATCTATCATTGCATACTTGCATTTCTAACATGGTCA AGTTCTTATATTTCTTGCCAGTCTCTGCTAGCTAATCATAGTAGACTAGTATTATAAAGCTGCTTCGCAGAACTCTTATA CTCTAGTAAAACTTGTTAATGCTATTCTGGCAGGTTTGAAAAGGAACTAGCTGCTGAAGCCCTGAGAAGAAATGAAAATG ATACTCAGCAGGCATTAGATGATTTGACAAATCCAGAAACAAATTCAGCTTTGCAGGATAATATCGAGTCAAGGAAAAGG AAGAGACAAAAACAAGAAACAGATTCTGCAATTGAAAATGTTGTGCAAATGGGTTTTGAAAGATCTAGAGGTAAAGAAGT TATTTAGGTTTAGGACACAACAATGTGTTAATGTGAAATCTAGTTATAGACACATATGTTCTGCCTTGTTCTGATACTTG CTTCTTTTTTGCAGTTGTTGCTGCTTTTGAGGCGGGTGGCAATTTAGAACAAGTTCTGCAAAGACTGACGGCACTACCTG AGGCGGGTAGCACTTCTGAAAATATCCAGCCTCAAGTTAACTCTAGTGTTGCTCCCAATGGCAGTGCAAGTTCATCTGCT CCTCTACCAGATGATGTTATTTCTGATGTTCTAGACCAAATGAATGAGGTTGAAGATCCATCCGTCGCAGAAGAACGAGA TGTGGAGATGGAAGATGAGCTCTCTGCAGATATAGCAAAATCTGATGCATTGGATGATTATGACATTGAAGTTGACATAG AAGGGCAAGCCATAACTGAGTACCTGACTCTGCTTGAGTCTTCAAGCAGCAGTGGGAAAGTGGTTCCTTCCCAATAAGAA GAGAATGATTTTGAAGTGATTCAGGCTCAGTTTATGTAAATAGCAGGATGACATAGATATTAAATAATGGACGTGCTTTT TCTCTTCGTTGCTAGGAGTACATAGCTTGATGAGTACATGTGCTCATTCCCAGGAGTTCTATAGTAGTTTTATTTTTAGT TTATTTTCTTTAGCATTAAATACTTAATTTGCGTACTTGCAAAAGATAATTATGGAAAGTTCTCAAAATTTATGCTAATC TAAAGTTAGAATAGGTAGTGTTTGTTTTTCAGTTTGAGCTTCCAAAAGTAAATTTGGGTCCTTGTGTAACTTTGTGTTAT AATGTAAGGAGTAAGGACTTACTTAAAAACTTGGTAAATTTAAACTTTTTTGAAAGAAATTAATATAATTGATAATTTAA AAACTTGTGTTATTTTATATAGATTACTCTTGGACCATGGTGGTTAGCGGATTATTGTG
CDS sequence (LotjaGi6g1v0209700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAAATTGAAGATTGCAGGAACATGGTCAGGGATTCTCGAAGACGTAGAGTTGGAGGCTTGGACAATCGAAACGCT GCGTGAAGAGGTTGCAAAGCGATCAAACTGTGCCGCTAACTCCATCAATCTCATCTGCGCCGGGAAGATTCTCAAGGACG CCGCCGATGGAACCCAAAACCTCGCCCAATTGGGTCTCAAGAACAACTCTAAGATCCTCGCTTCTCGCCTCGCCGATCAA ACATTCATCGCTGAAGAAGAACGCTCTCGGAGGCTTGCCCGTATCAGGACTGCTGTGTCTTCAATGGCTGAAAGGCATGC AGATGGTTCACTACCTCTTGAGGACTTCAACATAGAAGTTGAAGATCAAAGTGGGAAGAAAGTACGTTTGGGATCTGAGA CTGATCAGAGGGCAGTAATGATGGGATTGATGCTTCATGCAAAGGGGAAGCGTCTTATCAGACAGGGAAATTACAAAGAT GCACTTGAAGTGCTTATCATGGGAGAGGAGTCATTCTCTCTTTGTGATCCAAAAGTCATTGAGCTGATTGACAATGTTCC AATACTGCAAATAGACATGGTGTGGTGCTACTTTATGATACGAGACATCCGATGTCTCTCAGATGCAGGAAAGCGTCTTG AAATGGCCAGGGCAGGAATTGAACGTGCTCATGGGAAGGATTCTCTCCGCCTCAGAATCTTACAAGGAGGTTGCTATCCA GAACTTGCATTGCATTTGAGGATGGAGCTGCTTGAAGGGGTGGTGGCATATCATACTGGCCAATTGGAGAAGTCAAGAAA TGTATTAGCTTCTGCAAGAGCAAAGTTTGCCCAGCTGCAAGTGCCAGATGAAGCCTTATCACTTGTTATGAGCATGGGCT TCAAAGAACGTGGTGCAAAGAGAGCATTGCGAATGAACAATCAAGATGTTGGGAGTGCCATTGATTTCCTTGTTGCAGAG AAGGCAAAGAAAATGCAAAAACGGGAGGAAGATATTCGGAGAAGAAATGAAATTAGGGAACAAAAGAGTTATGGAATGAC ACCCTCAAAGAAAGCTGTGGATATAGATAGATTGAAGGAATTGGTCTCTATTGGGTTTGAAAAGGAACTAGCTGCTGAAG CCCTGAGAAGAAATGAAAATGATACTCAGCAGGCATTAGATGATTTGACAAATCCAGAAACAAATTCAGCTTTGCAGGAT AATATCGAGTCAAGGAAAAGGAAGAGACAAAAACAAGAAACAGATTCTGCAATTGAAAATGTTGTGCAAATGGGTTTTGA AAGATCTAGAGTTGTTGCTGCTTTTGAGGCGGGTGGCAATTTAGAACAAGTTCTGCAAAGACTGACGGCACTACCTGAGG CGGGTAGCACTTCTGAAAATATCCAGCCTCAAGTTAACTCTAGTGTTGCTCCCAATGGCAGTGCAAGTTCATCTGCTCCT CTACCAGATGATGTTATTTCTGATGTTCTAGACCAAATGAATGAGGTTGAAGATCCATCCGTCGCAGAAGAACGAGATGT GGAGATGGAAGATGAGCTCTCTGCAGATATAGCAAAATCTGATGCATTGGATGATTATGACATTGAAGTTGACATAGAAG GGCAAGCCATAACTGAGTACCTGACTCTGCTTGAGTCTTCAAGCAGCAGTGGGAAAGTGGTTCCTTCCCAATAA
Protein sequence (LotjaGi6g1v0209700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKLKIAGTWSGILEDVELEAWTIETLREEVAKRSNCAANSINLICAGKILKDAADGTQNLAQLGLKNNSKILASRLADQ TFIAEEERSRRLARIRTAVSSMAERHADGSLPLEDFNIEVEDQSGKKVRLGSETDQRAVMMGLMLHAKGKRLIRQGNYKD ALEVLIMGEESFSLCDPKVIELIDNVPILQIDMVWCYFMIRDIRCLSDAGKRLEMARAGIERAHGKDSLRLRILQGGCYP ELALHLRMELLEGVVAYHTGQLEKSRNVLASARAKFAQLQVPDEALSLVMSMGFKERGAKRALRMNNQDVGSAIDFLVAE KAKKMQKREEDIRRRNEIREQKSYGMTPSKKAVDIDRLKELVSIGFEKELAAEALRRNENDTQQALDDLTNPETNSALQD NIESRKRKRQKQETDSAIENVVQMGFERSRVVAAFEAGGNLEQVLQRLTALPEAGSTSENIQPQVNSSVAPNGSASSSAP LPDDVISDVLDQMNEVEDPSVAEERDVEMEDELSADIAKSDALDDYDIEVDIEGQAITEYLTLLESSSSSGKVVPSQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 546 | 544 | 2.8E-185 | ||
| CDD | 3 | 74 | 72 | 2.43811E-11 | – | |
| Gene3D | 14 | 82 | 69 | 1.1E-8 | – | |
| SUPERFAMILY | 21 | 73 | 53 | 1.91E-6 | ||
| ProSiteProfiles | 23 | 72 | 50 | 9.918 | ||
| Gene3D | 259 | 332 | 74 | 7.4E-9 | – | |
| SUPERFAMILY | 274 | 320 | 47 | 2.36E-9 | ||
| ProSiteProfiles | 280 | 320 | 41 | 11.848 | ||
| SMART | 282 | 319 | 38 | 0.0015 | ||
| ProSiteProfiles | 352 | 392 | 41 | 11.438 | ||
| SUPERFAMILY | 352 | 392 | 41 | 2.44E-7 | ||
| SMART | 354 | 391 | 38 | 0.15 | ||
| Gene3D | 356 | 392 | 37 | 1.8E-6 | – | |
| CDD | 358 | 387 | 30 | 9.18959E-5 | – | |
| MobiDBLite | 384 | 416 | 33 | - | – | |
| MobiDBLite | 384 | 399 | 16 | - | – | |
| Coils | 395 | 415 | 21 | - | – | |
| SUPERFAMILY | 397 | 449 | 53 | 6.6E-5 | ||
| MobiDBLite | 400 | 415 | 16 | - | – | |
| ProSiteProfiles | 410 | 437 | 28 | 8.571 | ||
| SMART | 414 | 450 | 37 | 0.22 | ||
| MobiDBLite | 455 | 481 | 27 | - | – | |
| MobiDBLite | 455 | 484 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0209700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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