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LotjaGi6g1v0210600.1

Overview

Field Value
Gene ID LotjaGi6g1v0210600
Transcript ID LotjaGi6g1v0210600.1
Lotus japonicus genome version Gifu v1.2
Description Pentatricopeptide repeat-containing protein, putative; TAIR: AT1G19290.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9LN69|PPR50_ARATH Putative pentatricopeptide repeat-containing protein At1g19290; TrEMBL-Plants: tr|G7IIX7|G7IIX7_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi6g1v0210600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:50807177..50812131) extracted from Lotus japonicus Gifu genome v1.2.

CTAACTCCTTTTATTGGTCGTCCACAAAACCATCATCGATTGTTGACCAACAACTTGCCTGAGCAACCCTAAAACACTAC TCCCCCGACAGTCGTTATAAAAACACATGATAAAATTGTCATGTTTAGTAATTATTTTCATCCGTGAAGCAAATGCAGCA CTAGACTTAAGCTGATTAATGGCGCCTTTCTATTAGAATTTGCAACGGTTGTCCTTGGTGTAGTGTGTGTTCTTCACTTG TTCAGAAACCAAACCATTCATTGTATTGAACACTCCACAAGTGATGCTGTTCCAAAATGCTGTCATGTTCCCTCCACAAA CCCACCACCACCCCTCTTCTTCTTCTCCTCCGTAAATCCTTCCATCTCTCTCCTCCCCTCCTCCGAGAAGAAACCACCAA CCCACCGGAGCCTCAACTCCTCGACCGTATCTCCCGCCTCCTCATCCTCGACCGCCCCCACGCCCTCCGCCGCCTCACCT TTCATTTCTCCGACCACCTCACCGACGCCCTCCTCCTCCGTCTCCGCCTCCACCCCTCCGCCGCACTCTCCTTCTTCCGC CTCGCCTCTGACCACCCCCACTACCGCCCCAACCCCCGCTCATACTCCCTCCTTCTCCACATCCTCGCCCGCGCCAAAAT GTTCCCTCAAACCACCTCCCTCCTCCGTGACCTCCTCTCCCTCCACTGCACCAACAACTTCCGCGCCTACGCGGTCCTTA ACGATGTCTTCTCCGCCTACAATGAACTCGGTTTTGCCCCGGTTGTATTGGACATGCTACTCAAGGCCTTTGCGGAGAAA GGGCTGACCAAGCATGCACTCCGCGTGTTCGATGAAATGGGAAAGTTGGGTCGAGCCCCGAGCTTGAGGTCCTGCAATTG CTTGTTGGCTAAGTTGGTTGGCAAGGGTGAAGCGAGGACCGCTGTCATGGTTTATGAGCAGATTTTGAGGATTGGGATTG AGCCTGATGTTTATATGTTTAGCATTGTTGTGAACGCGCATTGTCGGGTTGGGAGGGTGGATACTGCTGAGGGGGTTTTG GAGGAGATGGTGAAGATGGGGTTGGAGCCTAATGTTGTGACTTACAATGCGCTGATCAATGGGTATGTTTGCAAAGGGGA TGTGGAGGGAGCTCAGAGGGTGTTGGGTTTGATGTCTGAAAGAGGGGTTTCGAGGAATGTGGTTACTTGCACCTTGTTGA TGAGGGGTTACTGCAAGCAGGGCAGGGTGGATGAGGCTGAGAGGTTGCTTCTTGGCGTGGTGGGAGATGGGTCGCTGGTT ATGGATGACCATGTTTATGGTGTGCTGGTGGATGGCTATTGTAAGATAGGGAGAATGGATGATGCTGTTAGGATTCAAGA TGACATGTTGAGGGCGGGATTGAAGATGAATATGGTTATTTGTAACTCGTTGGTTAATGGGTATTGTAAGAATGGTCAGG TTTCCAAAGCTGAGCAAGTCTTTAGGGGAATGAGGGATTGGAATTTAAGGCCAGATTGTTATGGCTATAACACACTGTTG GATGGATACTGCAGAGAAGGGCAAATGAGCAAGGCTTTTATACTTTGTGAGGAGATGATAAGGGAAGGAATTCAACCATC GGTTGTGACCTATAATACTGTTCTCAAGGGGTTAGTTCAGGCCGGCTCGTATGGTGATGCTTTGCGCATTTGGCATTTAA TGGTGGATGGAGGCGTGGCTCCAAATGAGGTCAGCTATTGTACTCTACTTGATTGCCTTTTCAAGATGGGAGATTCTGAA AGGGCAGGGATGCTCTGGAAAGAAATTTTAGGCAAGGGATTTACTAAGAGCACAATTGCATACAATACGATGATCAGTGG GTTGTGTAAGGTGGGGAAAGTGGTGGAAGCAGAGGCTGTTTTTGAAAGGATGAGAGAACTTGGATGCTCATCCAACGAAA TAACGTATAGGACTTTGAGTGATGGATATTGTAAAATTGGCAATCTTCATGAAGCTTTTAGAATTAAAGATGTGATGGAA AGACAAGCGATTTCTCCTTCCATTGAAATGTACAATTCCCTTATTAATGGACTTTTTAAGTTTAGGAAGTCAAAAGATGT CCCTGATCTCCTTGTTGAGATGAAAACTAGAGGATTATCTCCAAATGTTGTTACCTATGGAACCCTTATTTCTGGTTGGT GTGATGAAGAGAAGCTAGACAAAGCTTGTAATTTATATTTTGAGATGATTGGAAAAGGGTTCACTCCCAATTCGGTGGTC TGTAGCAAAATTGTTAGCCGCCTTTATAAGGATGCTAGAATCAATGAAGCAACTGTCATCCTAGACAAGATGGTGGATTT TGATCTTCTTACAGTTCATAAATGTTCTGATAAGCTTGTGAAAAATGATATTATAAGTCTAGAAGCTCAGAAGATTGCTG ATTCTCTTGATAAAAGTGCTATGTGTAATTCTCTTCCCAGTAATATTCTGTACAACATAGCTATAGCTGGACTTTGCAAG TCTGGGAAGGTTGACGAAGCTAGAAGTTTTCTGTCAGTTTTGTTGTCTAGAGGATTTCTTCCTGATAATTTCACATATTG TACCTTAATTCATGCCTGCTCAGTTGCTGGCAACATAGATGGTTCTTTCAACTTAAGGGATGAGATGGTGGAGAGAGGTC TTATTCCGAATATTACTACATATAATGCATTAATAAATGGTTTGTGCAAATTAGGAAATATGGATCGAGCACAGAGACTT TTCGACAAACTTCATCAAAAGGGCTTGGTTCCTAATGTTGTTACCTATAATATACTAATCAGTGGTTTCTGTAGAATTGG TGATCTTGATAAAGCCTCTGAATTGAGAGACAAGATGAAAGCAGAAGGGATTTCTTCAAATCACAAACTGCCTTGATCAG TGGTCATTTGGGAAGACACTTTGAGGTTTTGGATTAAGTTACTATGGCAGATTTTAACTAAATTCTGCATGATACATGCC GAGTGCAAAGTTGAACAGTTGGCTCAAGACTCAATTACAGCACAACTGCATCCATGTTCTGATGCATCAATCATTTCTTC ATGTGAATGATTTGTAGGTAGGTAATGGCCACATGCTCCTGCTGTTCATCCACAAGCACCATATTGAAAGTTCTAGGGTT CACTCTCTTTGTTAATGAAACTGGATGTGCTTCATAATTGTTTTTGTTCAAGTGATCAAGGAAAGTGCATGGAGTTTTTC TCCTGATGGAATGAGGGGAACTGTGAAGTGTTCATTACAGATTTCAACGGTTTGGAGGCATGTATGGATAGGTTTACTGA TGATGTTGTCTGATGTCCACTTAAAATGTTGGAAGTTTTGAGCACTGGGAAACAAAACAAGTTATAAGGTACCCCAAATC TTCGTGCTCATAATACAGCTAAATGAGTTGCCTTACATAACTGTAAAGGTGATATTATCAATCTCATTACTTTGTTTGTA AACTGACTCATGTAATCTATGTTACCCACCTCAGGCAGGATGTTGAAGAAACTAGACGGCGTCTGTCAAGCTATGGTAGG AGGCCGAGATGATTTCGTTCATCTGAAAGGTAATAAGACATTGTTTCTAGATGTAGCACTGTATGGGTATATACATTTCC CACCATGTTGGGAGAGAGAATTGCTATGTCATGACCAGCGTAACTGTGGTTTATATAGTACCCTTCAGGCCTTTGCAATA TCTGGATGCTGAAGACTTTCTGCATTGAGAATTCTACCTTGAATTACTTCATGGAGAAGTGCTGCATATGCATAAAAGAA ATAGGTAAAGTTTTGTCAGAATTCAGCTAAATTTATGGGTGGGGTTTTTATAAGATGAAATAATAGGGACTACTCATCCA TCAAAGAGTCAATAAGCAATTTCAATTCATTTTGTCAAAAGCCTGACCAAGAATTCTGGCTACAGAGCTTTTTAATTATA TTCATTGTTATTTCCATCACCAGGGGTTAGCTGACCTAGGCCCTACCCTTCCGGTCATGAATTTTTTTTACATGACTTGG ATTGACATTGTAAATTATCATTGCAGTTAGTGGTTTTCCCTGACCTTAGAGTGGGAGAGCTTCCCTCACCTAAATAATCT TTTTCTATTGCCAAAAAATATTCCTTGTCATAGTTTTGATGCACATAGTTTGGCCTGCAACTATTAGAATTTGAGGCTAA ACTATTTATATATAATAGATTTGCCTATGGAATGATTTTTTTTCTTCAATGAAATGAAGTTTCATTTTTACAGGCCTCTT GCCCCAAAATCGTTGTTCTTGTTTTCAGTATTTGTTTACTTCTTTGATAAGGTGCTGAATTTATAGAGCTCTGAGTAACT AACAGAAAATATTGACATCAACAAATTAAACTTTTATTGCTTTTGGTGACAGTAAGGCACAAGAGCTTATACAGGAACTT TGAAAATTGGTATGGACAGTTTTGAAGAGAATCACTATTGTGTTGTGCTGCCTACTACCCCTGAGTTTTGTTTGGTTTTG GTCATTTAGCTGCTATACCTTGTTAGATACAGTTGAAATTTCATCTTTCTAGTTTCTATAACTGAACATGTATAATTGTT TGTGATTTTTTAACTCTGTTATACTTGTTATTAACTGGTGTGTTAGCTTTAATTCTGATAGTGTACAGCTGAGTTGTTGG AGCTGATTGTCACCACATGATATCGTGTGTTTGTGTACGCGACACCAAATATCCCAGTCTAAGAGTCCGTTTGGATATGG ATCAAAGTGTACTTATTGGAGTTTCTCTACTAAAAATGCACTACATAAGCCCTTATATACTGTATTCTTTGATCCGCATT CAAATAACCTCTTACTCACCGGTCACTATATTGCTCATTTATTTTCTTCACTTTTCGCTCAATCGTATCACCAGAAAAGA ATAAATGGTTAAGAATGAGAATGAATGTATGGTGCATTAGAAAACAAGCTTTTTCCTGCTTTTGCTTTTCTGTAG 

CDS sequence (LotjaGi6g1v0210600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTGTCATGTTCCCTCCACAAACCCACCACCACCCCTCTTCTTCTTCTCCTCCGTAAATCCTTCCATCTCTCTCCTCC CCTCCTCCGAGAAGAAACCACCAACCCACCGGAGCCTCAACTCCTCGACCGTATCTCCCGCCTCCTCATCCTCGACCGCC CCCACGCCCTCCGCCGCCTCACCTTTCATTTCTCCGACCACCTCACCGACGCCCTCCTCCTCCGTCTCCGCCTCCACCCC TCCGCCGCACTCTCCTTCTTCCGCCTCGCCTCTGACCACCCCCACTACCGCCCCAACCCCCGCTCATACTCCCTCCTTCT CCACATCCTCGCCCGCGCCAAAATGTTCCCTCAAACCACCTCCCTCCTCCGTGACCTCCTCTCCCTCCACTGCACCAACA ACTTCCGCGCCTACGCGGTCCTTAACGATGTCTTCTCCGCCTACAATGAACTCGGTTTTGCCCCGGTTGTATTGGACATG CTACTCAAGGCCTTTGCGGAGAAAGGGCTGACCAAGCATGCACTCCGCGTGTTCGATGAAATGGGAAAGTTGGGTCGAGC CCCGAGCTTGAGGTCCTGCAATTGCTTGTTGGCTAAGTTGGTTGGCAAGGGTGAAGCGAGGACCGCTGTCATGGTTTATG AGCAGATTTTGAGGATTGGGATTGAGCCTGATGTTTATATGTTTAGCATTGTTGTGAACGCGCATTGTCGGGTTGGGAGG GTGGATACTGCTGAGGGGGTTTTGGAGGAGATGGTGAAGATGGGGTTGGAGCCTAATGTTGTGACTTACAATGCGCTGAT CAATGGGTATGTTTGCAAAGGGGATGTGGAGGGAGCTCAGAGGGTGTTGGGTTTGATGTCTGAAAGAGGGGTTTCGAGGA ATGTGGTTACTTGCACCTTGTTGATGAGGGGTTACTGCAAGCAGGGCAGGGTGGATGAGGCTGAGAGGTTGCTTCTTGGC GTGGTGGGAGATGGGTCGCTGGTTATGGATGACCATGTTTATGGTGTGCTGGTGGATGGCTATTGTAAGATAGGGAGAAT GGATGATGCTGTTAGGATTCAAGATGACATGTTGAGGGCGGGATTGAAGATGAATATGGTTATTTGTAACTCGTTGGTTA ATGGGTATTGTAAGAATGGTCAGGTTTCCAAAGCTGAGCAAGTCTTTAGGGGAATGAGGGATTGGAATTTAAGGCCAGAT TGTTATGGCTATAACACACTGTTGGATGGATACTGCAGAGAAGGGCAAATGAGCAAGGCTTTTATACTTTGTGAGGAGAT GATAAGGGAAGGAATTCAACCATCGGTTGTGACCTATAATACTGTTCTCAAGGGGTTAGTTCAGGCCGGCTCGTATGGTG ATGCTTTGCGCATTTGGCATTTAATGGTGGATGGAGGCGTGGCTCCAAATGAGGTCAGCTATTGTACTCTACTTGATTGC CTTTTCAAGATGGGAGATTCTGAAAGGGCAGGGATGCTCTGGAAAGAAATTTTAGGCAAGGGATTTACTAAGAGCACAAT TGCATACAATACGATGATCAGTGGGTTGTGTAAGGTGGGGAAAGTGGTGGAAGCAGAGGCTGTTTTTGAAAGGATGAGAG AACTTGGATGCTCATCCAACGAAATAACGTATAGGACTTTGAGTGATGGATATTGTAAAATTGGCAATCTTCATGAAGCT TTTAGAATTAAAGATGTGATGGAAAGACAAGCGATTTCTCCTTCCATTGAAATGTACAATTCCCTTATTAATGGACTTTT TAAGTTTAGGAAGTCAAAAGATGTCCCTGATCTCCTTGTTGAGATGAAAACTAGAGGATTATCTCCAAATGTTGTTACCT ATGGAACCCTTATTTCTGGTTGGTGTGATGAAGAGAAGCTAGACAAAGCTTGTAATTTATATTTTGAGATGATTGGAAAA GGGTTCACTCCCAATTCGGTGGTCTGTAGCAAAATTGTTAGCCGCCTTTATAAGGATGCTAGAATCAATGAAGCAACTGT CATCCTAGACAAGATGGTGGATTTTGATCTTCTTACAGTTCATAAATGTTCTGATAAGCTTGTGAAAAATGATATTATAA GTCTAGAAGCTCAGAAGATTGCTGATTCTCTTGATAAAAGTGCTATGTGTAATTCTCTTCCCAGTAATATTCTGTACAAC ATAGCTATAGCTGGACTTTGCAAGTCTGGGAAGGTTGACGAAGCTAGAAGTTTTCTGTCAGTTTTGTTGTCTAGAGGATT TCTTCCTGATAATTTCACATATTGTACCTTAATTCATGCCTGCTCAGTTGCTGGCAACATAGATGGTTCTTTCAACTTAA GGGATGAGATGGTGGAGAGAGGTCTTATTCCGAATATTACTACATATAATGCATTAATAAATGGTTTGTGCAAATTAGGA AATATGGATCGAGCACAGAGACTTTTCGACAAACTTCATCAAAAGGGCTTGGTTCCTAATGTTGTTACCTATAATATACT AATCAGTGGTTTCTGTAGAATTGGTGATCTTGATAAAGCCTCTGAATTGAGAGACAAGATGAAAGCAGAAGGGATTTCTT CAAATCACAAACTGCCTTGA 

Protein sequence (LotjaGi6g1v0210600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLSCSLHKPTTTPLLLLLRKSFHLSPPLLREETTNPPEPQLLDRISRLLILDRPHALRRLTFHFSDHLTDALLLRLRLHP SAALSFFRLASDHPHYRPNPRSYSLLLHILARAKMFPQTTSLLRDLLSLHCTNNFRAYAVLNDVFSAYNELGFAPVVLDM LLKAFAEKGLTKHALRVFDEMGKLGRAPSLRSCNCLLAKLVGKGEARTAVMVYEQILRIGIEPDVYMFSIVVNAHCRVGR VDTAEGVLEEMVKMGLEPNVVTYNALINGYVCKGDVEGAQRVLGLMSERGVSRNVVTCTLLMRGYCKQGRVDEAERLLLG VVGDGSLVMDDHVYGVLVDGYCKIGRMDDAVRIQDDMLRAGLKMNMVICNSLVNGYCKNGQVSKAEQVFRGMRDWNLRPD CYGYNTLLDGYCREGQMSKAFILCEEMIREGIQPSVVTYNTVLKGLVQAGSYGDALRIWHLMVDGGVAPNEVSYCTLLDC LFKMGDSERAGMLWKEILGKGFTKSTIAYNTMISGLCKVGKVVEAEAVFERMRELGCSSNEITYRTLSDGYCKIGNLHEA FRIKDVMERQAISPSIEMYNSLINGLFKFRKSKDVPDLLVEMKTRGLSPNVVTYGTLISGWCDEEKLDKACNLYFEMIGK GFTPNSVVCSKIVSRLYKDARINEATVILDKMVDFDLLTVHKCSDKLVKNDIISLEAQKIADSLDKSAMCNSLPSNILYN IAIAGLCKSGKVDEARSFLSVLLSRGFLPDNFTYCTLIHACSVAGNIDGSFNLRDEMVERGLIPNITTYNALINGLCKLG NMDRAQRLFDKLHQKGLVPNVVTYNILISGFCRIGDLDKASELRDKMKAEGISSNHKLP 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D 74 253 180 4.8E-25
ProSiteProfiles 99 133 35 6.939
ProSiteProfiles 154 188 35 9.361
PANTHER 159 316 158 7.4E-203
PANTHER 159 316 158 7.4E-203
Pfam 160 185 26 0.035
SUPERFAMILY 171 564 394 7.96E-8
ProSiteProfiles 189 223 35 8.385
Pfam 220 252 33 4.9E-10
ProSiteProfiles 224 258 35 12.518
TIGRFAM 226 260 35 3.3E-8
Gene3D 254 322 69 4.1E-21
Pfam 258 307 50 5.1E-14
ProSiteProfiles 259 293 35 11.29
TIGRFAM 261 294 34 4.7E-7
PANTHER 294 404 111 7.4E-203
ProSiteProfiles 294 328 35 10.238
PANTHER 294 404 111 7.4E-203
TIGRFAM 296 318 23 1.5E-5
Gene3D 323 462 140 6.6E-40
ProSiteProfiles 330 364 35 11.707
Pfam 330 357 28 1.3E-5
TIGRFAM 333 365 33 1.4E-6
Pfam 361 393 33 3.3E-10
ProSiteProfiles 365 399 35 12.923
PANTHER 366 503 138 7.4E-203
PANTHER 366 503 138 7.4E-203
TIGRFAM 367 401 35 3.3E-10
Pfam 399 447 49 1.5E-16
ProSiteProfiles 400 434 35 13.044
PANTHER 404 575 172 7.4E-203
PANTHER 404 575 172 7.4E-203
TIGRFAM 404 436 33 5.4E-8
ProSiteProfiles 435 469 35 11.816
TIGRFAM 437 471 35 7.9E-9
Gene3D 463 537 75 4.6E-17
ProSiteProfiles 470 504 35 9.251
TIGRFAM 472 502 31 4.0E-4
Pfam 472 502 31 0.0037
Pfam 504 553 50 2.6E-15
ProSiteProfiles 505 539 35 13.0
TIGRFAM 508 540 33 8.2E-11
PANTHER 509 798 290 7.4E-203
PANTHER 509 798 290 7.4E-203
ProSiteProfiles 540 574 35 11.192
Gene3D 554 694 141 9.5E-26
Pfam 574 622 49 4.6E-12
ProSiteProfiles 575 609 35 10.161
TIGRFAM 578 611 34 6.2E-6
ProSiteProfiles 610 644 35 11.937
TIGRFAM 612 645 34 8.8E-7
ProSiteProfiles 645 679 35 6.675
Gene3D 695 777 83 1.1E-13
Pfam 714 761 48 7.8E-11
ProSiteProfiles 715 749 35 11.093
TIGRFAM 718 750 33 2.9E-6
ProSiteProfiles 750 784 35 11.4
TIGRFAM 752 786 35 1.4E-6
Gene3D 778 852 75 2.2E-26
Pfam 784 833 50 2.9E-18
ProSiteProfiles 785 819 35 13.91
TIGRFAM 788 821 34 7.1E-9
PANTHER 800 856 57 7.4E-203
PANTHER 800 856 57 7.4E-203
ProSiteProfiles 820 854 35 13.165
TIGRFAM 822 855 34 4.3E-9

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0210600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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