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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0227300 |
| Transcript ID | LotjaGi6g1v0227300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nuclear transcription factor Y subunit; TAIR: AT1G54160.1 nuclear factor Y, subunit A5; Swiss-Prot: sp|Q9SYH4|NFYA5_ARATH Nuclear transcription factor Y subunit A-5; TrEMBL-Plants: tr|A0A0B2PSG7|A0A0B2PSG7_GLYSO Nuclear transcription factor Y subunit A-3; Found in the gene: LotjaGi6g1v0227300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:53316894..53321423) extracted from Lotus japonicus Gifu genome v1.2.
CAGAAAGATCTGTGACTTGTCAATGAATCTTAATCTTAATTTAATGGTGGAGCCTGTGCTGTTGTTGTTACTTCCTTCTT AGTTACACTTACTGTGTGCACTGTGCAGTGTATTCAATTATCATCATCGGTAAGTAACTAAGACGTGTTTGTTTCTTTGA AAGCAAAGTAAAATACGTGTTCGTTTCAGCTTAGCCAAAAGACCAATAACCAAACACAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGTAAAGGAGAGAGCATTCTAGAGAGGTTCAGTGAGATTATTAGTGGATGTGTATGTGTTCAACAGAGGGAGACA TGTTCAACTTCAACCCAACACTTGAACTACTTGCTTCTCCACACCTTACCAGATCCCAAAGGTACCCTCTCTCTCTCTCT CTTGTTTTATTCTGCTTTATCCACTCCACTATTTTGGTTTTCTTTTTTAGCTTTGCATCACCATTCATGCCATTTTTTTT TTTTTAATTCTTTTTTTGTTGTTTGGTGCTTTTCTTTACCATGGTTTTTGATTTATTTTATGTGTGTGGGATCCAAATAG TGAGTGTTTTCCATTTGCATGTGGAGCTGGTCATGTTATTAAGGTCACTCACTGCTTGTCTTAAGATTTGGAAAGTAGTT TTAGGGGTTCTGTTCTGCTCATTGTGGATGGGAAAAAAAGTTTATTATTTTTGATTTAGCATATGCCTTTTTAAGTCCTG TGGGTAATGTTTGTGATTTGTATAATTTCGATAAGATCAAAGACAAGTGATGAAGTGAAAAGGGAATTGCAAATTTCTAT ATTTGGGGCTTGGTTGATGTCATGAATGGACTTGAAGATTCAGACATAAAACCTTGAATTCAAGTTATGATTCTGATTAG AGATTTAGGTTTGCTGGTGTTGTAGTCAGTTTATATAATTCGTTTGAAGATTTTGAGAATTTAAGGCTCCAATGCAAGAT ACAGTGTACTCAAGGATTGAGGGACTTAAATGTTTTCAAAGGACTAATATGAACATGGAATGAGAACTTGGAGTTTGCAA ACTTTATTAAGTGAAATCAAAACTAGCCAAGCATGCATGGCTTTTTTTCCTAGTTTGCAGTTATGGTTGCCTTCTATTGC TCTTGTGAGAAGAAGAGGATGAACACATCTATTTTGTTTTCCTGCCTAATTCTAGATTCCGTTCAAATTTCAGTATGTCC TTCTGATTTTAAGCCAAGTATAAAATTTGAATTTAAGGGATTGTATTAGTGACTGGTGTTTGAGGCTTTCTCGCCTTTCT CTATTCTAGGTATGTTACACTATACATTAGTGTTACTCTACATTTATTGTGGTTTTCCATGGCTCGATACATGTTTTGCA AGAACTTCTAAATGAAGAAAGTAGAATGTCTTCTTTGATGAGAGCAGATATGCGAATTGTCATACGGCTTATAGTTTCCA TGTTTTATAACTTCTATTGTTTAATTTCTGGTTGAATTTTATTCGAGGAAATGCTGCCCTTTGGTTTTGTTGGAGCAGAG TGCTCTGTTTTTGGTTCGAAATATGCTATTTTTGGGTGTAGTTTTTATGTGTTTATTTCCTCCGGAACAAATATGAAGGG CAACTGGACAGTTTCATTTTATAAACGAGCTTGATTTGATTCTGTGTAATGTTATGTAGGATTTATTTACCTTTGCTTTC CTTACGCCTGATCTTTCCCCCCCTTTGTAATGAAGTATCTTTATTGATCCCTCCCAAAAAAGAGTTAAAAAACAATGAAT TTATAACTATACAAATTTTATCACCTACTTTTTCTTGTATTCAGGCAGGATGAGTTTCAGTGAATGGTTTCATTTTGATT CCTCGGTATTAATAAGCTGTGAAATTGGTTGAAGGATAACTCCGCTCTTCTGTGTCTATTCCTATGGGTGGCTTGCTGAT TTGAGTATGAATGTGTTCTTCATTTGATGACTATATTTGATCTTTTCTGAACACATTTTGTTAGATTATGTCCTTATTTT CCCTATGCAAGGATATTATGGCATCATTTGATTCGTATAGGCCAAGACCTAGTGGAAAAAGGAAAAGATGTTGTTTGTTG TATTTCCTCCCCTTTATCCATAAGGAATACATGATGTATTGTAGTTTCTAAGGCGTGTAAATACGTTTCGTTCCCGTCCT TTGTGTTCCTCTTATATATCATGTTTTGCATAACTTCTTTTTATTCCTTACCACATTTTTACCTCTGGGCCTGTTTAATA TGGAATCATTCTCTCAGGTCAAGATCTACATTTTAAGTAATGGTTGCGTTGAAGGTTGCATGAAGTCATTTCTCTTTATG AATCATTCTGAAACTGAGCCCAGTTATTCACAAGTTGATTGTAATAACTCAATGGTATGTGAAAATGCTGTGTTTTAGAT TAATAGCTTGCATTTTTAATGACTAACAAGTTGTTGTCCATCCAATTTCAGGCTCATGCTCCTTATCCATATGGTGAACC AATTTTTGCTGGTCCATTTGTTGCTTATGGACCACAGGATGTTGTAAGTGTGATCTCTAGTACATCTTTTTATAAATGCC ATTGCTGTTTAGATGTATTTCTTTATGCTTGCTTTTGGCAAATTAAAAATTTTGTAGCTTCTTTTATTGAAGGGATTTTT GGTTCCATTTTAACTTTGTTGTATAATACTTGATAATAATGTTCCTTTCTTTTGATATATTTAGAATCAACCCCAAATGT TGTTGCCTCATATGCTGGGATTGGCATCCACTAGAGTTGCATTACCACTTGATCTTGCACAAGATGGACCCATTTATGTC AATGCGAAGCAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAGCTTGAGGCACAGAACAAACTCATCAAAAG TCGTAAGGTATGCTCCATAGGATGTTGATGCTTTGAACTCTCTGCTTGTGTCATTCAAGAGTTGATATAGCACATGAATA TGCATCAACAACTTTTTTCATGTTCGGAGCAGAAAAATATCCCTACACGCATCCTACCTTTTACAGCATGGCATGAATAA TCCTTTTTTTATTTATTTTTCCTGGGGGCGGGGGTGTTACGACATCTTAAGGGTTAATTTTAAAATTTACATAAGTTTAA CTAAAATGGACCCTCCGAGGGTGAATGGTTCCATCCTAGGTGAAAAGGGTAGAATTTGAAAAAGCATGTGCAACAGAAAA GAATTGCATGTTAGGCACAAGGTAAAATTGTTGTTTGCAAGGGTATGTATCTCTTTTTAACATTTAGAAATGAAACTGCA ATTAGTGCAATACCATAGAATTACATGATGCATTTGAATTATATACCAAGGAGTTGCCTGCTTTTATGAATCTGGTTTGG ACCAAAAGAAATGGTGCTAATCCAACTTAGTTTACTCCTTGAATTGAATGCAGCCATATCTTCACGAGTCTCGGCACCGC CATGCTTTGAATAGGGTTAGGGGGTCTGGGGGGAGGTTCCTCAGCACGAAACAGCTTTCGCAGTCTAATGCAGAATTTGT CACTGGTGGGCATTCTGGCTCTGTCAATTTCAGCAGATATCAAGAGGATCCTTCAGAGCTGGAAAGACATTCCTCAAAAA CTGGAGACAATGCATCTTCCATCACAACCTGCTCTGATCGGACATTTTTATCTGGTAATAGTGTCAATTTTAGGCAGCAA GAGCACATCTTTCTGGGGACCTCTGCAAACATGGGTGGAGCACCACAATGCAGTGCGGGACTCACCTTCGGTGGAACAAA GCAACACGCTTCGGTTGTCCGGTGAAAGATTTAACCTACCAAAATCTATTTCATCGGTTCGGCAAATCATCCTTGGCTTA ATCGGTTTGGTTTCTGTGTTTTCATGCTTCAGTCACTTCAGTATGTTTTCTCATGTGTTCTTAGTTCTTACAGACATGTC TTTTTGAGAGACTTTACAGTCTGCATTAGCACTCGGACCTTTCTTGTTCCGTTCCTATGTGATCTGAAGTTGCTATTGAT CATTTTGAACTAGATTGGAATTGTTTCTGCATGGAACTTCAGTTTGTGACCCATATATAACTAACTTCTATGGAATGTGA AGACTTTGAGGTATAATAGGCATGTTTTTACTGGTTTGGTTCATGTTTGGGAACTGTTGACATGTCTGAAGTGTAAGCGC ACCAGTTTTATTCAAACTAAGCTTCTAGTTAGTGGTTACTCGCTCACATTTTATAGGGGGTTCTAAATGAACCATGAGGG TCAGTGAGATTATTTATAAATAAATGGCTTAAATATTTTGGAGGTCCATGAAATTGTATGACGTATGAAAATAAGTCCCT GAAAAATGTTTTTCCGATTCGGGAACCCTGAATTTTTTTTTTAATCTAAATAAGTTCCTACCCGTCTTATGTGCTTATCT CTTATTTTGCACAATCATCAATTCTACGTGGTTTTTTTATTTTTCTTTTATTACAGATGTATTAATCAATTATAATTAAC AAATTAATCTTGATCAAAAAACAACATTACAAAATAAAACTTAATATGAT
CDS sequence (LotjaGi6g1v0227300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTCATTTCTCTTTATGAATCATTCTGAAACTGAGCCCAGTTATTCACAAGTTGATTGTAATAACTCAATGGCTCA TGCTCCTTATCCATATGGTGAACCAATTTTTGCTGGTCCATTTGTTGCTTATGGACCACAGGATGTTAATCAACCCCAAA TGTTGTTGCCTCATATGCTGGGATTGGCATCCACTAGAGTTGCATTACCACTTGATCTTGCACAAGATGGACCCATTTAT GTCAATGCGAAGCAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAGCTTGAGGCACAGAACAAACTCATCAA AAGTCGTAAGCCATATCTTCACGAGTCTCGGCACCGCCATGCTTTGAATAGGGTTAGGGGGTCTGGGGGGAGGTTCCTCA GCACGAAACAGCTTTCGCAGTCTAATGCAGAATTTGTCACTGGTGGGCATTCTGGCTCTGTCAATTTCAGCAGATATCAA GAGGATCCTTCAGAGCTGGAAAGACATTCCTCAAAAACTGGAGACAATGCATCTTCCATCACAACCTGCTCTGATCGGAC ATTTTTATCTGGTAATAGTGTCAATTTTAGGCAGCAAGAGCACATCTTTCTGGGGACCTCTGCAAACATGGGTGGAGCAC CACAATGCAGTGCGGGACTCACCTTCGGTGGAACAAAGCAACACGCTTCGGTTGTCCGGTGA
Protein sequence (LotjaGi6g1v0227300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKSFLFMNHSETEPSYSQVDCNNSMAHAPYPYGEPIFAGPFVAYGPQDVNQPQMLLPHMLGLASTRVALPLDLAQDGPIY VNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALNRVRGSGGRFLSTKQLSQSNAEFVTGGHSGSVNFSRYQ EDPSELERHSSKTGDNASSITTCSDRTFLSGNSVNFRQQEHIFLGTSANMGGAPQCSAGLTFGGTKQHASVVR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 226 | 226 | 3.4E-81 | – | |
| PANTHER | 1 | 226 | 226 | 3.4E-81 | ||
| SMART | 74 | 135 | 62 | 1.5E-36 | ||
| ProSiteProfiles | 75 | 135 | 61 | 37.186 | ||
| Pfam | 78 | 132 | 55 | 3.6E-27 | ||
| PRINTS | 78 | 100 | 23 | 1.0E-24 | ||
| ProSitePatterns | 80 | 100 | 21 | - | ||
| PRINTS | 109 | 132 | 24 | 1.0E-24 | ||
| MobiDBLite | 159 | 182 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Cellular component | CCAAT-binding factor complex | A heteromeric transcription factor complex that binds to the CCAAT-box upstream of promoters; functions as both an activator and a repressor, depending on its interacting cofactors. Typically trimeric consisting of NFYA, NFYB and NFYC subunits. In Saccharomyces, it activates the transcription of genes in response to growth in a nonfermentable carbon source and consists of four known subunits: HAP2, HAP3, HAP4 and HAP5. |
Expression pattern of LotjaGi6g1v0227300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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