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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0231200 |
| Transcript ID | LotjaGi6g1v0231200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cytokinin oxidase/dehydrogenase-like protein; TAIR: AT5G56970.1 cytokinin oxidase 3; Swiss-Prot: sp|Q9LTS3|CKX3_ARATH Cytokinin dehydrogenase 3; TrEMBL-Plants: tr|A0A0U2V8L5|A0A0U2V8L5_LOTJA Cytokinin oxidase/dehydrogenase 3; Found in the gene: LotjaGi6g1v0231200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:53987588..53992563) extracted from Lotus japonicus Gifu genome v1.2.
ATCGATTGATCCACGTGCAAGTGTCGTGCACATGGAACTTTTCCCATCCTTGGCCTTCAAAGTCTCATCATTTGAATATT TATACTACCACCCAGAAATGCACCAAAGAACGCTATGCATGTTTTGCAGTGATTGCTGCGCCCTTCTACTCATCGAGGTT TGGATCTTGCCCCGAGGGGTGGGTATAGGTTGTGCGCTTTAGCTCCATCCATTTTCGGTGCTAGTTGATTCATCAACTAC TAGACCGCTTGATTAGTCTTTTACCCCTATACCCAAGTCAGTCGAACGATTTGCATGTCAATGTCACTACAGGCCTCAAC TAGAGTTTTCTTTGACTTCACCCCACTCAGACATAGTTCACCATCTTTCGGATAATGTATGGGAAGAATTTGCACTAAAC ACTTAGTGGTGCTTGCATTGATCTGTAAAACAGTTTGGTGACATTATTTAGCAAGTTATAAAGCTCAACTTTATCCCATT TATATAAAATTAATTAATGACCCAAAATGTTTAATCACTTGAGTTCAACTTTTGAGAAATTGAATAGAACAACAACTGTC ACAAAATCTTTTATCCCTTGTTATAATAATGAAGTCTCCCCCTTTTCAATTCTTTAACTCAAAAGACAAAAGATTCTTCC TCCCCTCTCTCTCTCCCTACAGTGTGTGTATCCATCTTTTTATCATGCAAAGTCCTCTTCTGTGCTATTTATAGCCCCTA CCTCCTCCACCTCCTTCCACACACTTCACAACACATTAATCACCAAGCAAAATTCCCCTAAACACTTTCTTCAATCACTC TCTTTCTTCATAGCAAAAAATGGGGGAAAATTTCCTTTCTCCAACATACTTGATTCTCCTGCTAATAACCATCACACGGT TGATATCCACAGTGGGGAAAACCGAGCAATGGAAATCCCTGCTACTACCAGAGATATCCAACAAGCTCCGTGAGGACCCT GAAGCCATTCAAGGAGCTTCAAGGGACTACGGCAACCTCATCCACGATGTCCCAGCAGGGGTGTTTGTTCCATCCTCGGT GCAGGACATAGCTACTCTGATAAAGCTTTCATACAACAACAACAAAGTTGGTGATTCTGTCCCTTTCAGCATCGCGGCGA GGGGTCAGGGGCACTCAACGAAGGGACAGGCGATGGCGCGCGACGGGGTGGTGGTGGACATGGCAAGGTTCAGAGAAGGA GGGAATGGTGTTGGAATCACTGTTGGAGGAGGAGGGGGAAAGCAGTACTATGCTGATGTTGGTGGAGAGCAACTTTGGAT TGATGTGCTGCGTGCCGCCATGGAGCATGGACTTACACCTGTTTCTTGGACTGATTACTTGTATTTGACTGTGGGAGGGA CTCTTTCCAATGCTGGCATAAGTGGCCAGACATTCAAATATGGTCCTCAAATCACAAGTGTTCTTGAAATGGATGTCATC ACCGGTACGAAATTTAATTGAAATATAGCACATTTTTGGATTCACGTTTAATCTTACAGAATCAAGTTAATATAAAAGTA GCTTTTTTCAGAATCAATTCTTTTTCTAACGTGTTGTATATACAAACACATGTTTTAAATTGTGTGACAACGCTCTGATT CGAATTCAGAGTTTTTATCTATGCTTTTTTGATAAAAAGCTGAATTTAAATATAGATAAAATGAATCTGTATATTACACA TACTTTATGCGAAAAAAAACTATTTTATAATCATATATTTATCTAAATCTAAATTTCACTGTTTAATTCGTTTATGAATG ATTTGGTTCCTGACATATCATGGATTTAATTGATATCTATTTTTTGGTTAGAAATTTCACATTGTGAATTTGATTTTTAT TTTTTGTATGTAATACCAAATTTGTGGCTGTTAAAACCTGACAGAGAGTCTTGGTCTACGATTTTGGTGATAAGCAAGCG TTTTCCACTGGGTCTCCTGTTTGAAAATTTCTTAAAGTCTAAAACCTGTTCACACTGGCATTGCCTCCTTTTTTCTTCAT TAATTTATATTATCATTAATCTAAGACCATGTTAAGCTTATTTTAGTACATCGGAAATGATAAATTATACTAATATAAGT CTAGTATGGTCAATTCTTATGTAAAAATAGGATAATGTTGATTTTCCGTTAATTGTTTGTTAAAGAATGTATGCATGCAT GCATGCAAGGACATAATTTTTTAATATTTAATCAAGATTTGGTTCTGTGTTAATTCAGGAAAAGGAGAATCTGTAACCTG CTCCAAGCAGACAAATTCAGAGTTATTCTACGCGGTTCTTGGAGGTTTAGGACAATTTGGAATTATAACAAGGGCCAGAA TTGCTCTGGAGCCAGCACCCAAGAGGGTATACGTTCTTATGAATTGACTGCGAATTTGTCTTGTAGCTTCTTCTTCCAAC AATTTCAGAGTAACACACCAATGTTTGAGCACTAAATGTCCTTGTCCAAAAGCACTACATAACTCTAACTTTTCTTGGTA GTTGCCACCCATATATTAATAGGTTTCACATTTTATGAGTGCATGATAGTCATCCATGAAAGACACATACACTAATGGAT GAAAATGAAACTATTACCAACACATATTTAACTATTCATATTTTTTAGTTTTAGAAATCTCACTAGTATTTTCTCTCATT TTTTCTTCATCTATCTGTTTCTATTGTATCGCTTTATCTTCTTATCATATTCATTACTTTTTTTTTATTATTTTCATTTG GGTGAACCATTTTTCAAATGCTTCTAATGAGTGAAGTTTGTGGTGTAATATCATTTGACGTTTAGATGACAAGGATTTCA GAACCAAGAATTCTAGTTCCAGTACCATGTTTGACTTTATCCTTCTAACTTGGATGTGACACGTTGAAAAAACCATATTA ATGTTTCCTTTCATTGGTGGAATAATGAGATGATATATTACATCAAATAATGGTGAATTTTTTTGTTGGCAGGTTAAATG GGTCAGATTTCTTTATGATGACTTTTCTGCTTTCACCAAAGACCAGGAACGATTAATCTCAATCAATGGAAGCAAACAAA AAAATAGATTGGATTATTTGGAAGGGATGCTGCTAATGCACCAAGGACCCATAAATAATTGGAGATCTTCTTTCTTCCCT TTAGCCGACCATCCAAGAATAATTTCCCTAGTAACTCAACATAGAGTCCTCTATTGCCTTGAAGTGGCCAAATATTATGA TGACCAATCCGAAGTCAATGTGGACAAGGTACTATATAACTTGAAAAGCTATTTCCTAGAACATGATGTGTTTTTTAAAA TCAACTTATTTGTAATCAAAACCATTCTAACACGGATAAGATACTCACAGAAGCTACACCTCACAATAAAAGATTTCCAA ATATTTTAATTTTAATTTTGACGTTTGTTACAAAATTGTGATCTATATATTAAGTAATATTCTTTTTTTCATTTTTGTGC AGGAACTGCAAGTTTTGTTTCAGGGACTGAGCTATATCCCTGGATTTTACTATGAAAAAAATGTCTCATTTGTTGAGTTC TTGAATAGAGTCAGAAGTGGAGAACTGAAGCTTCAGTCACAAGGACTATGGGATGTTCCTCATCCATGGCTTAATTTGTT TATACCAAAATCTCAAATCTTGGATTTTGATTCAGGTGTATTCAAGAATATCATTCATAAAAGAAACATCACTACAGGAC CTGCCTTGGTTTACCCCATGAACAGAAACAAGTAAGCCCTGAATTAATAACCATATATACTTTTTTTGTTATTATTATTA ATAGGATGTTCGGATCAACTTCTATTTGTTCATTATTAATTCTGACAACCAGATGCTACTCAAACAAGTTTTCCACAAAA TTAATTCAGACTTTCGAATCCATTCTAGAAGAATTTTCAAACATGCACTAATTAACATCAGACTACTCATAAATCACTTT GTTATCCATTGAAGATGTAAAAAATAAAAGGTAAAAAGAACTAATTGATTTAATTAATTTTCAGGTGGGACAATAAGATG TCAGCATCTATACCAGATGAGGATGTGTTCTATGCAGTTGGATTTTTGCACTCAAGTGGGTTTGATAATTGGAAGGCTTA TGATGCTCAGAACAGAGAGATCTTGCAATTTTGTAATGATGCAGGGATTAAGTATAAGCAATACCTTCCCCACTACCGCA CACAGGAAGGTTGGACAAACCATTTTGGTCCTAAATGGGGGACTTTTTCGGAAAGAAAACACCAGTTTGATCCAAGAATG ATTCTTTCACCAGGACAAAGAATCTTCAACAACAATTAACCCAGCTTTTTGATTAGTTTTTAATGAGAAAAAATGAAAAA GAGACATATGTGTATATATGATAGCTGGTTCAGAGTTCAGATCCATAGCTTTTGTACTTTTTTTGTTAGAGGTGGGGTTA AGAGGTGCATTGCTTTGGCATTTATATAAATCAGGTTATACATACCTTAGATACGTTTGGTTCACAAAATCTTATGTGAG AGGTGCACACAGCTAGCTGTATCTTTCTTTTTCTGTGTGTCCCTCACTTTGTCTAGTAACACTAATTAAAAGGAATAGTA GCTTCAAAACTAGCTAGTGTAGCTAGTGTAGAGAAAACGTTTATGTTAAGGATTTTTATCTTAATGGGCAATGAGTGTGT TTGGTGACTTAATGATTCTTTCTCTTAGTTTTTTAATGTTTGTTTCCTTCCTAATTTTGTACCCTTAGCTAGCAATAATT GAGATCCTAGGTTAATTACAAGGGACATTATTATTGTGTAAGTCCTAGCTGTATGCTATATAACCAATCATCTTAGAGCA TCTCAAATGGTGAGATCTTATTTGGGGACTTAACTCACTTTTTGTGGGCCCAGATTGCCACATAGGATTTAAGACACTCA TAAAGTCTCTATGCACATTTCACTCTAGTGGTTGAGATCTTATTTTACTTTTGACTGGACCCACAATACTCAATATATTT ATATTATTTATTTCCC
CDS sequence (LotjaGi6g1v0231200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGAAAATTTCCTTTCTCCAACATACTTGATTCTCCTGCTAATAACCATCACACGGTTGATATCCACAGTGGGGAA AACCGAGCAATGGAAATCCCTGCTACTACCAGAGATATCCAACAAGCTCCGTGAGGACCCTGAAGCCATTCAAGGAGCTT CAAGGGACTACGGCAACCTCATCCACGATGTCCCAGCAGGGGTGTTTGTTCCATCCTCGGTGCAGGACATAGCTACTCTG ATAAAGCTTTCATACAACAACAACAAAGTTGGTGATTCTGTCCCTTTCAGCATCGCGGCGAGGGGTCAGGGGCACTCAAC GAAGGGACAGGCGATGGCGCGCGACGGGGTGGTGGTGGACATGGCAAGGTTCAGAGAAGGAGGGAATGGTGTTGGAATCA CTGTTGGAGGAGGAGGGGGAAAGCAGTACTATGCTGATGTTGGTGGAGAGCAACTTTGGATTGATGTGCTGCGTGCCGCC ATGGAGCATGGACTTACACCTGTTTCTTGGACTGATTACTTGTATTTGACTGTGGGAGGGACTCTTTCCAATGCTGGCAT AAGTGGCCAGACATTCAAATATGGTCCTCAAATCACAAGTGTTCTTGAAATGGATGTCATCACCGGAAAAGGAGAATCTG TAACCTGCTCCAAGCAGACAAATTCAGAGTTATTCTACGCGGTTCTTGGAGGTTTAGGACAATTTGGAATTATAACAAGG GCCAGAATTGCTCTGGAGCCAGCACCCAAGAGGGTTAAATGGGTCAGATTTCTTTATGATGACTTTTCTGCTTTCACCAA AGACCAGGAACGATTAATCTCAATCAATGGAAGCAAACAAAAAAATAGATTGGATTATTTGGAAGGGATGCTGCTAATGC ACCAAGGACCCATAAATAATTGGAGATCTTCTTTCTTCCCTTTAGCCGACCATCCAAGAATAATTTCCCTAGTAACTCAA CATAGAGTCCTCTATTGCCTTGAAGTGGCCAAATATTATGATGACCAATCCGAAGTCAATGTGGACAAGGAACTGCAAGT TTTGTTTCAGGGACTGAGCTATATCCCTGGATTTTACTATGAAAAAAATGTCTCATTTGTTGAGTTCTTGAATAGAGTCA GAAGTGGAGAACTGAAGCTTCAGTCACAAGGACTATGGGATGTTCCTCATCCATGGCTTAATTTGTTTATACCAAAATCT CAAATCTTGGATTTTGATTCAGGTGTATTCAAGAATATCATTCATAAAAGAAACATCACTACAGGACCTGCCTTGGTTTA CCCCATGAACAGAAACAAGTGGGACAATAAGATGTCAGCATCTATACCAGATGAGGATGTGTTCTATGCAGTTGGATTTT TGCACTCAAGTGGGTTTGATAATTGGAAGGCTTATGATGCTCAGAACAGAGAGATCTTGCAATTTTGTAATGATGCAGGG ATTAAGTATAAGCAATACCTTCCCCACTACCGCACACAGGAAGGTTGGACAAACCATTTTGGTCCTAAATGGGGGACTTT TTCGGAAAGAAAACACCAGTTTGATCCAAGAATGATTCTTTCACCAGGACAAAGAATCTTCAACAACAATTAA
Protein sequence (LotjaGi6g1v0231200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGENFLSPTYLILLLITITRLISTVGKTEQWKSLLLPEISNKLREDPEAIQGASRDYGNLIHDVPAGVFVPSSVQDIATL IKLSYNNNKVGDSVPFSIAARGQGHSTKGQAMARDGVVVDMARFREGGNGVGITVGGGGGKQYYADVGGEQLWIDVLRAA MEHGLTPVSWTDYLYLTVGGTLSNAGISGQTFKYGPQITSVLEMDVITGKGESVTCSKQTNSELFYAVLGGLGQFGIITR ARIALEPAPKRVKWVRFLYDDFSAFTKDQERLISINGSKQKNRLDYLEGMLLMHQGPINNWRSSFFPLADHPRIISLVTQ HRVLYCLEVAKYYDDQSEVNVDKELQVLFQGLSYIPGFYYEKNVSFVEFLNRVRSGELKLQSQGLWDVPHPWLNLFIPKS QILDFDSGVFKNIIHKRNITTGPALVYPMNRNKWDNKMSASIPDEDVFYAVGFLHSSGFDNWKAYDAQNREILQFCNDAG IKYKQYLPHYRTQEGWTNHFGPKWGTFSERKHQFDPRMILSPGQRIFNNN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 4 | 4 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| PANTHER | 2 | 529 | 528 | 0.0 | – | |
| PANTHER | 2 | 529 | 528 | 0.0 | – | |
| Phobius | 5 | 16 | 12 | - | – | |
| Phobius | 17 | 21 | 5 | - | – | |
| Phobius | 22 | 530 | 509 | - | – | |
| SUPERFAMILY | 43 | 247 | 205 | 9.81E-40 | ||
| Gene3D | 53 | 528 | 476 | 1.3E-203 | ||
| ProSiteProfiles | 61 | 248 | 188 | 14.19 | ||
| Pfam | 65 | 217 | 153 | 2.2E-16 | ||
| Gene3D | 121 | 250 | 130 | 1.3E-203 | ||
| Pfam | 249 | 527 | 279 | 2.8E-120 | ||
| SUPERFAMILY | 249 | 528 | 280 | 8.5E-90 | ||
| Gene3D | 252 | 487 | 236 | 1.3E-203 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Cytokinin metabolic process | The chemical reactions and pathways involving cytokinins, a class of adenine-derived compounds that can function in plants as growth regulators. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Molecular function | Cytokinin dehydrogenase activity | Catalysis of the reaction: N6-dimethylallyladenine + acceptor + H2O = adenine + 3-methylbut-2-enal + reduced electron acceptor. | ||
| Molecular function | Flavin adenine dinucleotide binding | Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. | ||
| Molecular function | FAD binding | Interacting selectively and non-covalently with the oxidized form, FAD, of flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes. |
Expression pattern of LotjaGi6g1v0231200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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