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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0231300 |
| Transcript ID | LotjaGi6g1v0231300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cytokinin oxidase/dehydrogenase-like protein; TAIR: AT5G56970.1 cytokinin oxidase 3; Swiss-Prot: sp|Q5Z620|CKX10_ORYSJ Cytokinin dehydrogenase 10; TrEMBL-Plants: tr|A0A0U2UQP8|A0A0U2UQP8_LOTJA Cytokinin oxidase/dehydrogenase 4; Found in the gene: LotjaGi6g1v0231300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:54003397..54007681) extracted from Lotus japonicus Gifu genome v1.2.
GAGAGAAGCTATATATAATAGACACCAATTCTAAGCAAAAACACATTACCAACTTTACGCCTCTCTATCGTTCCCACAAA CAATGGCAAGGAGGAATGCCATGCTCTTGGCCCTGCTATTTCTATCATGCGCAGTGCTCACACAGGGCCAACAAATACGC CCCTTAACATCATTCCAATCAGACCCTAAAACCCTTTCAGAAGCCTCAACTGATTTCGGTCACATAGTTCACAAAACCCC TACACTAGTTTTGGAGCCGTCTTCGGTCAGCGACATCTCTGACCTCATAAAGCAATCAAACTCTCGTGCCACCCCCTTCA CCATCGCCGCGAGGGGGCATGCCCACTCGTATCTCGGGCAAGCCATGGCTGAGGGTGGGGTCGTGGTAAACATGACCGAG CTCAACCGGTTCAGAAACGGGTCAGGGATTGTTATAACATGTGGTGGTGGTGGTGGTGGCGGTAGTGGAGGTAATTGTTA TGCGGATGTTGGGGGTGAGCAGTTATGGATTGATGTGTTGCATGCATGCCTTCAACGTGGTCTCTCGCCGCTCGCTTGGA CTGATTACTTGTATTTGACAGTTGGTGGTACGCTGTCTAACGCTGGGATCAGTGGCCAAGCCTTTCGATTTGGACCTCAG ATCTCTAATGTCCTTGAAATGGACGTTGTTACCGGTACGTAACTTCAATTCATTCCTTTTTTCTTCGCCCTGACGCAAGC CACGCACATATCAATTGTTTAGTATTTTAATTTTCCCCAGCGCAATTGTATTTTTTTTTTGGTTTTGCAATTGTATTTTT GATTGAAGATAGTTTTTATTCCTTTTCTGTTATATATGAACAAAAATTTTGTGAGAAAGAAGTCCGACAAAAGTTATATA TACTGAGAATTTTGTGTTTGCAATGGAAATATTGCCAAATTTACAGAATCAAACATAACCTTAATTTTTGTAAATATTAA ATCATTTTAGATTTGGTGGAGGGAAATAAATTAAAATCTTTTTTCAATTTTAATATATTCGAATGTAATATTTTTGAAGT CAATTATGACACTAAAGGTTAAATGGGTATAAAATACACAAAAATATTTTCTATTCAAGAACAATTATAAGTAACATTTA ATGATGCATTATAGGTTTCAATATTTTTTAATGATATATTGTAGAGTTAGCTCATAATTAATTTTAAATTTAATAATACT TAAAATAGAAAATGGAAGGATGTGATTGAATTAATGACGGTAAAACTTTTTACATCATCAGAGCATTGGAATTAATCTCT TAATAATATGAACTGATAATGTCATTTTTTACATGAACAACGAATTAAATAAAATTTACTATTGTACCACATCATAGATA AATGTAAATAGAAAATACAAAAAGAAAAGAAACACGACAATAATATATACGTAATCAGATATTTGTGTATTTTTTTACAC TATTAGTGCATATGAAGATATATTCCTTCTTTAAAAAAAAAACTGATATATTTCTAAAAAAATTCCCCTAACTCTCTCAA CCAAGATTTAGGGTTTGACTGGGTAGCTGCAGTGTCGCCTCCTTGCACGCGGCAACATCCTCTCGTTTCTCTATCCACTT TCCTTGTGCTTTTTCAAGGGTGTGGCAACAAGGGGATCATCAACTTTGCTTTCTGGTCTGTCTCTCCTCAAATACATTTC TGAGGTTTTAAAAAACTCTGAAGTTTCACACATCACAAACAATATTCTACCAACAAGAATGTTTATAATTTATTTGATTC ACATTAGTGTCAATCTCTCTATTTTTTTTCATCTAAATGAGTAAATACAATTTAAATGTGGCTTTTTACAGGGAAAGGAG ACCTTGTTACTTGTTCTGCCAACATGAACTCAGAGACATATTATGCCGTTCTTGGGGGATTAGGTCAATTTGGGGTGATA ACAAGAGCAAGAATACTTCTAGGACCTGCACACACCAGGGTTAAGTTAAATTTCATTGAATTTTATTTTTTTGTGTACAC ATTCTTGTAAAGTGAACCCCTGCAAATTCATCACCAACATTTAAGAGGTCAACAAAATTGTCATAAATTTAACACAATAG TAATAGGAGTTTCAATTAAAACAATCTCATATTTTAGCTAAATTAGCTAGCTCACTTAAGCTGTACGTGAGTCAAAATGA GTTCAAGCAAGACACTACGACGTGAAGGCTAAATAACTTGTAAACACAAGTTTGATATCAATTGATCTTTGTTTAATTGC TTGCAGGCAAAATGGCTCCGTTTGATTTACACCGATTTTTCCGCTTTTTCTGGAGATCAAGAACATTTGATCTCATTCAG TGGAAGTAGTGACACTAATGCATTTGATTATGTAGAAGGCATGCTTCTCCTGAATCAGCAGCCACTTGACCTTTCCTTTT TTCCAACACCAGATCAGCCTAGGATAACTTCCTTGGTATCTCAATACGGCATCACCTACGTCCTTGAACTAGTCAAATAT TATGACAACAATTCTGAAGCACACATTAATGAGGTAATTAACTTCAAACATATATTGTTTAACTTATCTATGAAACAATG TTAATCTTAATTAGTTAATCATATGCTTGTATAATTTCTTAAATAGGAAGTTGCAAATCTGGTCAAAGGTTTGAAGTTTG TTCCTAATTTTATGTTCAAAAAAGATGTGTCGTACGAGGAGTTTCTCAACAGAGTTCATGAAGATGAGCTAGCTCTTAGG TCAAAAGGACTTTGGGATCTTCCTCATCCTTGGTTGAACATGTTCATTCCAAGGTCCAGAATTTCAGATTTCAATGAAGG TGTGTTCAAGGGCATTATTCTAAAGCAAAATCTTACCGCCGGAATCGTACTAGTCTACCCGATGAACCGAAATAAGTAAG TTTACTTTATGTTATGTATTTGAAAAGTATCAATTAATACACAAAAATAAAATATATTTTTGATCAACATTATGCTTAAT TTGATATGATTCACAGGTGGGATGATAGGATGTCAGTAGTTACACCTGATGAAGATGTCTTCTACACTGTAGGTCTTTTG CAAACTGCTGCAAATGGGGGTGATGAGGTGCAGAAATATCAGGCTCAAAACCAAGAGATACTGCAGTTTTGTAAAGGTGC AGGCATTAAGATCAAGGAATATCTCACTGGTAACAAAACACATGAAGAATGGGTGGAACACTTTGGCCCCAAATGGAAAC TTTGGGAAGATAGAAAAGCTGAATTTGATCCCAAAAGAATCTTGTCACCTGGACAAGGGATTTTCTAATAAATAGCTAGC ATCTAGATAGGAACGAATTGGATTAGGAGGGATTTTCTAATAAATAGCTAGCATCTTGCTAGGAATAAATTGGATTAGGA GTTACCGTTTGAACCAACTTTTTTATGTCTTAAAAGTTACTTTAAAGTTTAATATAAAAGTTTTAAGAAAATAGTAAATG TTGTTTGTCAATTTTTATTTTTTATAGCTTGACGACTACTTTTAATTTAATAGAGCTTTGTCGCTATTTAAATCCATGAC TTTGGGTGGTTGCCATGACACGATGGTGGACAGGTCAAGTAATAGTGATGGTGGAGGTCGGTGGTACCTAGTGATGCTGG CAGCGGTGGAGGTGGTTGTTACTGGTGGCGGGGTGGTGATGGTGGAGGTTGGAAGCAGTGGTGGTGGTCCTTGTAGCGGC CGTGTTGGAGGTAGTGAAAGTGGAAGTGGAGGTGGGTGGCAGCGACAACAGTAATGGTGGCGATGGAGCTAGTGGTGTTG GCATAGGTGTGTTACCTGATGGTGACAATGGTCGAGCTAGTGGTAGCAACAGTGTGGGAGAGGGTGGTGGTGGTAGTGGT AGTGGTGATGGTAGATGTGGTGGTGGCAGCGGCAGTGGTACTGGTGGAGGGTGGAGGTGGCGGTAGAGAAAATGACATCG GTGAGGGTGGTGGTGACAATGGCCGTGGTGGCGGGTTGCGCAATGGTGGAGGGTGGTGGTGACAACGCTATGGTCGTGGT GGTGATGGAAGGCGGTGGTGGCGATGATGGTGGAGATGGTGGTAATGGTACGTGGAAGCAGTGTTTTAAAACTCGGCTCG GTCGATGTACTGAGTTAACGAGTCATTGGTCGAACCAGTGAGTCACTGGTCGGATTGCTTGACTCGGTGCATATTAAATT TTTTAAAATTTAAAATACTAATTAACATTAATTAATTAATTTATACTCCAAAAAACATATATTCATATTATATCAAAAAT ACATTCCAAAATATCAGTTTTTTTTAACAACTACTATCTAAAAAC
CDS sequence (LotjaGi6g1v0231300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAGGAGGAATGCCATGCTCTTGGCCCTGCTATTTCTATCATGCGCAGTGCTCACACAGGGCCAACAAATACGCCC CTTAACATCATTCCAATCAGACCCTAAAACCCTTTCAGAAGCCTCAACTGATTTCGGTCACATAGTTCACAAAACCCCTA CACTAGTTTTGGAGCCGTCTTCGGTCAGCGACATCTCTGACCTCATAAAGCAATCAAACTCTCGTGCCACCCCCTTCACC ATCGCCGCGAGGGGGCATGCCCACTCGTATCTCGGGCAAGCCATGGCTGAGGGTGGGGTCGTGGTAAACATGACCGAGCT CAACCGGTTCAGAAACGGGTCAGGGATTGTTATAACATGTGGTGGTGGTGGTGGTGGCGGTAGTGGAGGTAATTGTTATG CGGATGTTGGGGGTGAGCAGTTATGGATTGATGTGTTGCATGCATGCCTTCAACGTGGTCTCTCGCCGCTCGCTTGGACT GATTACTTGTATTTGACAGTTGGTGGTACGCTGTCTAACGCTGGGATCAGTGGCCAAGCCTTTCGATTTGGACCTCAGAT CTCTAATGTCCTTGAAATGGACGTTGTTACCGGGAAAGGAGACCTTGTTACTTGTTCTGCCAACATGAACTCAGAGACAT ATTATGCCGTTCTTGGGGGATTAGGTCAATTTGGGGTGATAACAAGAGCAAGAATACTTCTAGGACCTGCACACACCAGG GTTAAGTTAAATTTCATTGAATTTTATTTTTTTGTGTACACATTCTTGTAA
Protein sequence (LotjaGi6g1v0231300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARRNAMLLALLFLSCAVLTQGQQIRPLTSFQSDPKTLSEASTDFGHIVHKTPTLVLEPSSVSDISDLIKQSNSRATPFT IAARGHAHSYLGQAMAEGGVVVNMTELNRFRNGSGIVITCGGGGGGGSGGNCYADVGGEQLWIDVLHACLQRGLSPLAWT DYLYLTVGGTLSNAGISGQAFRFGPQISNVLEMDVVTGKGDLVTCSANMNSETYYAVLGGLGQFGVITRARILLGPAHTR VKLNFIEFYFFVYTFL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 243 | 243 | 2.2E-106 | – | |
| SignalP_GRAM_POSITIVE | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 20 | 20 | - | – | |
| ProSiteProfiles | 1 | 16 | 16 | 6.0 | – | |
| PANTHER | 1 | 243 | 243 | 2.2E-106 | – | |
| Phobius | 8 | 18 | 11 | - | – | |
| Phobius | 19 | 22 | 4 | - | – | |
| Phobius | 23 | 256 | 234 | - | – | |
| SUPERFAMILY | 33 | 236 | 204 | 4.02E-38 | ||
| Gene3D | 37 | 103 | 67 | 5.6E-91 | ||
| ProSiteProfiles | 49 | 237 | 189 | 14.589 | ||
| Pfam | 53 | 206 | 154 | 5.5E-17 | ||
| Gene3D | 104 | 239 | 136 | 5.6E-91 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Molecular function | Flavin adenine dinucleotide binding | Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. | ||
| Molecular function | FAD binding | Interacting selectively and non-covalently with the oxidized form, FAD, of flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes. |
Expression pattern of LotjaGi6g1v0231300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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