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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0235300 |
| Transcript ID | LotjaGi6g1v0235300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Poly(RC)-binding-like protein; TAIR: AT4G26000.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9SZH4|PEP_ARATH RNA-binding KH domain-containing protein PEPPER; TrEMBL-Plants: tr|K7MBU6|K7MBU6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0235300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:54520960..54528790) extracted from Lotus japonicus Gifu genome v1.2.
GATCATGTCCCATATCAGCCCGATACTAGTTAGACCTGAATATCTTTGAATTATTTCGGGTTTGTGAACGGGTTAGGGTT CACAAAATTATCCCGGTTAATCTTTCGGTCGGGTGAGGAACAAGCTTAACCCGTCACGCGTACGTGCCTACGAGATAATC ACTATACTACTATACTCTTCTTCTCAACTATACACTAACCAAGACCTCACCTTGACCTTCCCTCCTTCTTTCTCCTCACA ACCTCGCTCATGGCCACCGCCGAACCTACCCCGAACGGCACCCCCGCCACCGCCACCGCCTCGAATCCACTTCCATCTGA CAATTCCTCCGACGTCCAACCACCCACCGCCGACGCTGCCGCAGCCACCGCCCCATCCACTCAAGAGCCCGAGACAGAAG CTGAAGACGCCCCTGACACCACCGCGGACACTACTCCACCGGAAAAGAAATGGCCAGGCTGGCCAGGGGACTGCGTTTAC CGTCTTGTCGTCCCTGTGGGCAAGGTGGGCAGCATCATCGGCCGCAAGGGAGAGCTCATCAAGAAGATCTGCGAAGAGAC TCGAGCTCGCGTTCGCGTCCTCGAGGCTTCCGTTGGCACGCCTGATCGAATCGTAAGCCTCGAATCATCGAATCGCTCCC AATCTGTATCTCTAGGGTTTTGTTCTTATTTTTCCTAAATTTTTCTTCTGAAAAATAACATTTGTTTATTGCCATTTTCA GTTTCAGCTCTAATTATGCGCTTTTTTCTCATTAAATGCGTGTGTTATAGGCTTATAGTTGGAATTTAATGCTTGTTTTA GTTAGCTTTTATTGTTGAACTTCAATGTTATCATAATTTGATTTCTACGTGTGGCATGTGTTTGGTTTATGATTCTAATA GGTACTCATATCAGGGAAGGAAGAGCTAGATGCAGCTCTTTCGCCTGCAATGGATGCGGTTATAAGGGTATTCAAGCGCG TCTCTGGGCTATCGGAAGCTGATGGTGAGATTAAAGGGTCTGCTGCTGCTGCTACATTCTGTTCTATCCGTTTATTGACG GCGGCAACACAGGCTATCAATTTGATAGGAAAGCAAGGTTCAACAATTAGAGCCATACATGAGAATACCGGCGCTTCTAT TAAAGTACTGTCAGGAGGTATGCTTCCTATCTTGTTATCGAACTAGAAGCCTATAGGCTATAATGCTCCATCTAAAGCTT TGCAGATCTTTTGTGTATTTGCCTATATCGATTAATATTATGTACGTAAAGCATGGGAATCAAGCTGACCACATAATTGT AGTGAGTCTAACTCAACCTAACATAGGATCCACCAGAACCTACCTATGAATTTTTAGAACTTTAGTGAGTCTGACTCTAC CTAACATGTCGATGCGAGACTTCTTTGCTCTTCTAACAAGTGGTTCATATCTAAAGGAAAATTTAAATAACAAAATAAAG GCAGAACATAATCCATAGTACAAAATAGGGAAAAGAAACTAAACCTCCTGGAACTCCCATATGGTTAAAAACGATCTTCT ATCTCCAAGGAAGAATCTCATTTGCAATCACCTCACTTCTTCTCGGGAAGCCTCTGCAATAGCTCAAAGAGTGTGCTTAA ATGCTTTTATGAGCATTAGAGTTGGATAGAAATAGAATTCACAAAGTATGAAAAATATTTATTGGAATCCTTCAAGGAGG GCTTTTGTGTGAAGTGGTTACCCAATAAGTCCAAAATGTGCAACAATAATGACATGGCCATGACCCAACTTGAAACAATT ATATACACATTGATGTGGTTCTGTTGCACAGTGACAGGGTCATCCAACAAAGCAACACGGCTGTGCTAGAAAGCGACAAG ATATTACGTGCTATCAATGAATTTGTATGATTAAAGAGTGATTTTAGTGATGTTTCTATGCTAACTAAGAAATAGCTGTT AATGTTAGCTATTTTAATTTGTTTATTGTAGTTATGCCAACATGTTCATCTTGTCTGGAAAGACAGTTTTTCTTTTATTG AAGCTGGATTGATCCTCAAAGATTTTGTTAATATAATCAGTCTATTGATAAATTTGAATGAATTAATGCGTTCTTTTGGT GATACCATCGACTTCCCTTCATAGGTTTTGGCTCTTTGAAATATCACTTGTGTATGTTAAGGCTTAAGAGTCATAGGTTT AGGGCAACGAAGGAGGAGGAAGCAAATGAGAGAATGATAGCTTAAGTTATAATTGAATGTAATGGGTTAAGATACCATAA CCTAATACTCTTATTTATACTATTAGTTAGGTGAAGCAATAAGATCCATAGCTTAGTCAAATAAGAAAACAAATCAAGAC AAATATTCTAATATAATCTAAATGTATCCTGAATGGATTCTAACTGTGTACTTTTCTGGCCAAGAAAGAAATGTCTAGTC ACTATTAAAGTTAAATTGCTTGTTTCATATAACAGGAAATACTTAGTGTAATTTGAAATTACAATTCTTCTATCACTCAT ATTGTATAAATGCTATCTTGTACAGTGTAGTAATCATAAAATGAATCTCTCAAATCTCTCGCACTCTGTTTTTCTTCACT GATCCCAAGTAAATTTCCATGTAATGTTGTTTCATTGGAGCTGCGAACCCATAGTTAGGCATCAACCTTATAGTCTTAAA CATTGATTTCTTTGCACATCAACGCATGCATAGATGTATATTATGAATTGATGTATTTTATTAGTAAATTTAATTATGCC TACAGAGCATTCTTATATGTTTTCATTGTAATTTGTAAATAAAGGAGCTTTTTGCTGCTAGAAATCTTCTTGTGGCTCTA TCCTTTTTACTTTTGGGTATAGTATTACAGTTCCCAGATTAAAATATGATCTATTCCAGAATTTCTGTTACGGATACTTG GTAGAACCCTATAGGTTAACTTATGATCTCTTAAAGGACTATTCTATTTCTAAAACTCGATGCTAATGTTTATGAATGTA TCTTTTCCCTTCTTCCATTAGAGCATGCCACTCCATTTGGCATGCAGTGATTTCATGTTTAGTATTTTTTTAATGCCAAA TTATTTTTATGAAGATGAGGTGCAATCTTTTGCTACTGCGGATGAGAGGATCATAGAATTGCAGGGAGAAGCCTTGAAGG TCCTTAATGCGCTGGAAGCTGTGGTTGGCCATCTGAGGAAATTTTTGGTTGACCACAGTGTTCTTCCCTTATTTGAGAAA ACTGTAAGCTCGTTATTTGCTTAATTTGAAATTAGCCGAAAAATAAAAGTTTTAGCCCTTTAGGTGTCTGTCTGCTCCTC AATTTTCTATGCTATAGGATTGTTTGTGTTGCCTTTTTGTTTTGTCAATAGCTACTTCACCGGAGTTGCCATTAACACAT GTGAGATTGAGTAGTTTTGCTGCACTTGTAATTTTTCTAGTTCTAGATGTCTAGGGTATGTTTTGTCTTTTCTGTTTTGA AGGATTTCTTGTTCTTCTAAAAATTGCAATTGTGAGACATTTTTGTCCTCTCCTTCCATCATTTTGGCTGACATTGGATT GTCTGTTATCAATCTCAGAACTATATGAAAAGTCAACTTTTTTGTTTCTTGGTGTGAAGGACGTTAGTTGTAGTGGTTGC AACAACTGCAACACAAATGTTCCAGCTTCCGTAGTAATTGGAGGCCACTCCACACAGCACTGACACTCTGCAATCATCAC CCTCACCAAACTATAATTCAAAGTCGTTTACTAATCGAATTAGAAGAACACTAAACAACATTAGATGTACCTTAGCAAAC TAAGCAGCACAATTTTTTTAATGCATTCCTTATAATAAAACATCCAAGATCGCAAAATGTTATATTCATCCAACTCCAAG CATCATGAACTGCAAGAACATTAATTCACCATTTTTTCTGACAAACTTTTCAAGAAACGATGAGGGAGAACTGTTATTAC AATTTTTTTTTTGCATTCCCCTAAGTCTCCCTTTTCTGCCTTTGCTTCCCTAGAACAAAAACCACCACCATGCTTATGAT GATGGTGATGGTGCTGACGCAGCTTCCCCTTCAGTTTCTTCCTCATGTCTTAAGCATCCTCTCTTGAAGGGCTTCCATGG TGTTCCGTGCAGCAGTTATGAGTTTAGTGATAAGCTGAGCTTGTTGTGGATGGAGGATGGTGAGCGAGGTGATGCAATTG TGACTCTTGTTGGCCAGAAGATGTGATATTAGTTGGTAGTAATTCATCTGGTAGTTCTCCAGCAGATGGAATAAGTTGCA TGCTTGCATCAATAGGTGTTGGTCACGATCAACTCTTCTTATGCTTACCCATGGCTGCATCAATTCAATTCGATTTTTCA GGGCTAGAATAACATCCATGTTGGCGATGTTGCTTTCAACTAAGCAACTAATTGTGTGAAGTGTGCACATATAGTAAGTG TAACTTAGCCAAGATGATGGAAGGATGAACATCTCTCAAAGTTGTAATTTTTAGGCACCCAATAATCTGTTTTTTCAAGG GACTAATGTGTCAATCCATGTTTTTGTCTGGGATAATATTGGGGTTTTATTATCCTATTTTATTATAGGATACTTTAGTT GAAAAGTTCATATTTGTGTGTTCAGCTATTACTTTATTTTGGCAATGTAATAAATAATTGAACATGATATAAGAAAATGG GTTTCTGATTTTTTTGCTGCATATTTGATTTATTTATGTGTTTCCTCTTGCTGTTCAAGTACAATACGCCCATCGCACAA GACCGTCAAGCAGAGACCTGGTCTAACAAGTCATCGCTGCACACTACTTCACACAATAGCATATTTTCTGATATGCCGCC TTCAGCAAAAAGGGATTCTGTCTTTGTGGACCGTGAAAGTCAATTGGACTCTTTACTTCCTTCCTCCACTATGTCTCTCT ATGGCCAAGATGCTTCACATTCTAATATTCGTTCTTCAGCTCTTAGTCGTGTTGGTGCTCCCATTGTTACTACGGTTAGT TATTTCAACTATTTGCATGTTTCTCAGTGTTGCTTTACTTGAAATTTCCTTGAGAATGTGACTGATATTTTGTCGGATTT TACCAACTGTGCCTAAAGAATCTATAAATTATTGTTAGATATAAAACCATTCATGAGTCTTAACATAGCGCCTTAAGCTT TTGCCATGGTTTTAGATAGGATATTGGAGACATCATGACCAAGGGGTCAAGAGTGGAATTCTTGCTGCTCCATTCTTTTC AATAAAAGTTCAATTTAGGCACTGACAGATGTGCTGAAAAGATGCTTGCTGGGGAGGGTGTGTTAGATGTAAAATTATGT GGGAGTTTTCACTTATTAGCTTAAACTTTTGAGATAATTGGTTCTCGACAATTATTATATTTTACAGGATTTTATGTAGG ATTTTTTACGAACATTTTACTGGTCTAATGAGATGGGAATGTAGTGAAATCATAAGAGAGAAAGTTGTTATAGTTCAATT TTTATAAAAGATGATAGAGTCTTGTTTTAGGTGGTATGTGTGTGGAGAAGTTCTGGAAAATCACAGGTATGGAGAGGAGA CTCGATTGAGGATAGTCTATTAGAGTTAGTCGGTAAAGGGAGCCTAAGGAAAACTAAAGGTCAACCATCTTAGAATTTGG AATAGGCCTAGCTTTACCCATAAAGCTTTGGGGGATGAGGATTGCTCTATCCTATATAAGGGCTTTTTTTGTCATATATC TAGTCAATGTGAGGCCTTAAAGCACTCCCTCAAACCCAGATTTGGACATCTGGAAAGCGGGATTTGCAAGATTGGACATT TGCGGGTGGCCTATAGCCTTATATATGGGTGGTCTCAAATAAATGGATCTAGGACAGACTCTGATACCATCTTAGAACTG CCCCAAAAGCTAACGTAGGGGTGAGGATTGCTCTACCCTATATAAGGACTGTTTTGGTCATATCTCTAGTCAATGTGAGA CTTTAACAAACCTTTAAGAAAGAGTTAGATTTAAAATTATGTATGATCTATAATTGGATTTCAGATATGATATGATATTA TGGTTCCGTTGATGTATGTAGCCGACTCCATCCAGTGGGAGAACGTGTTGATTTTTTTGATTGGTCTAAATTTCAGGTTC CAGATGACATTTATTATTGGCTATTCTTACCTGCACTTTTGCACCTCTTAAATCACATGATGATCTGCTCTAGGCCAAGT TACTATCTGTGCATTTAAAAATTTGTCATAGCCTATAATATTACATGTATTTGAACTTACGCAGTAAGCATAAAGTATTT AAATATGTTCTCTCATAGTCTTCCTTATGCTTTGTTTCCACATGTCAGGTAATACAAACAATGCAAATTCCACTATCCTA TGCAGAGGATATCATTGGTATTCAAGGGAAAAATATTGATTACATTCGCCGCGCTAGTGGAGCCATATTGATTGTGCAGG AGAGCAGGGTGCCTGATGAAATCATTGTGGAAATAAAAGGCACCTCGTCTCAGGTTCAACTGGCACAAGAACTGATTCAG GTACGTGAGAAAGATTTTTTGATGTGGGGATTGAAAAAAAGTGGAAAGGAGAATGATAGTGAGACAAAATAATTCAATCC AGTTGATAGGCATGTATGAAATGAATGATATCCTACTGCGTGACTATTTTGTTTTGAAGTTAGTAGTTGGGTTTTCCCTT ACTTTGGCCAATCCTTTTGGAGTTAGTTTTCGCTTTATCTATTGAAAGATAATAGATATTCATGTAGGGAATATGGTGTT GCATCGAACAAATTGAGCATAAGGTGTGAAATTTTTACCTTATATTGATTAGGCTGCTTCCCATCAGGGTATATTTGTAT TGGAGCAATTGATTAATTTTTGCTTTTGCTCACAAAATTCCTTCGTTTATGTTGCAGGATATTATAAACAGTCACAGAGA ACCTGTTGCTAGCAGTTATGGCAGGTTAGATGCAGATCTGAGGTCTTCATATTCTCAGATGAGCACTGCGCCCCGCTTCT CATCTTCGATGTCCTCACAACCATACAACACAGGTTATGGAGCATCCGGTTTAGGGGACTACAGTACTTTCAGACTTTAA ATCGCTCTCTGTTCAAGGGCACTCCATTTGGCGGACTAGTTTCTAATTGGGTCTAATTGGAGAGAGTTAACGGTTGAATG GACTATGAAGCCTTTCAAAATCCAGTTTAGATTTTGTGTTATCTGATATCATCTATTATCATGGGTAGTTTTTGAGGTGG CTACTCGTTGAGAGTTGCCAAAAATGTAATGAAATATTAGGCATTTTAATGATGTTAGTTTTCTTGTGTAAATGCGCCTG TGAACTGCTTGGTGGTTGTTATTTTCGGTTTGCCATACCAAATATTGATACTTACAACGAACTTCATTGTTTGTATTTGG TCTCTGCAGTGTTATTGAACTAGCAGTGGACACACAGGTGTAACTAGATCTTCTAAAGCAACTTGTGGAACAATAAAAAG ATCTTCTAACATTTTCATGAGGCCATAAATACAGTCCTCCCATAGTTAATTTAAGAAAACTTTTGCGCCTTCTCGTATAC ATAGATAACCATCGGGATGATATATTGATATGTCCACCATAAATTCGTTGATCCCTTCATCACAAGCAAGGAGCTTCATA ACTCTTCCCACATATGCGTCCCACACATTGGCATGTGTTCGCAATGGCAGGAACGTGACACCCTGAGCCTTCCTCGCATG TTATGCAGGAGGCAATTCTGGTTCCAAACCTTGACCCAAAGGTTTCACCATTTCATACTGGATCCATCTGAATGAGACTC TTTTTTGCCATTTCCTTAGCCAACCACCACATTCATGTTAGTACACTGCCATGTATGTGGTCATAGAATGT
CDS sequence (LotjaGi6g1v0235300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCACCGCCGAACCTACCCCGAACGGCACCCCCGCCACCGCCACCGCCTCGAATCCACTTCCATCTGACAATTCCTC CGACGTCCAACCACCCACCGCCGACGCTGCCGCAGCCACCGCCCCATCCACTCAAGAGCCCGAGACAGAAGCTGAAGACG CCCCTGACACCACCGCGGACACTACTCCACCGGAAAAGAAATGGCCAGGCTGGCCAGGGGACTGCGTTTACCGTCTTGTC GTCCCTGTGGGCAAGGTGGGCAGCATCATCGGCCGCAAGGGAGAGCTCATCAAGAAGATCTGCGAAGAGACTCGAGCTCG CGTTCGCGTCCTCGAGGCTTCCGTTGGCACGCCTGATCGAATCGTACTCATATCAGGGAAGGAAGAGCTAGATGCAGCTC TTTCGCCTGCAATGGATGCGGTTATAAGGGTATTCAAGCGCGTCTCTGGGCTATCGGAAGCTGATGGTGAGATTAAAGGG TCTGCTGCTGCTGCTACATTCTGTTCTATCCGTTTATTGACGGCGGCAACACAGGCTATCAATTTGATAGGAAAGCAAGG TTCAACAATTAGAGCCATACATGAGAATACCGGCGCTTCTATTAAAGTACTGTCAGGAGATGAGGTGCAATCTTTTGCTA CTGCGGATGAGAGGATCATAGAATTGCAGGGAGAAGCCTTGAAGGTCCTTAATGCGCTGGAAGCTGTGGTTGGCCATCTG AGGAAATTTTTGGTTGACCACAGTGTTCTTCCCTTATTTGAGAAAACTTACAATACGCCCATCGCACAAGACCGTCAAGC AGAGACCTGGTCTAACAAGTCATCGCTGCACACTACTTCACACAATAGCATATTTTCTGATATGCCGCCTTCAGCAAAAA GGGATTCTGTCTTTGTGGACCGTGAAAGTCAATTGGACTCTTTACTTCCTTCCTCCACTATGTCTCTCTATGGCCAAGAT GCTTCACATTCTAATATTCGTTCTTCAGCTCTTAGTCGTGTTGGTGCTCCCATTGTTACTACGGTAATACAAACAATGCA AATTCCACTATCCTATGCAGAGGATATCATTGGTATTCAAGGGAAAAATATTGATTACATTCGCCGCGCTAGTGGAGCCA TATTGATTGTGCAGGAGAGCAGGGTGCCTGATGAAATCATTGTGGAAATAAAAGGCACCTCGTCTCAGGTTCAACTGGCA CAAGAACTGATTCAGGATATTATAAACAGTCACAGAGAACCTGTTGCTAGCAGTTATGGCAGGTTAGATGCAGATCTGAG GTCTTCATATTCTCAGATGAGCACTGCGCCCCGCTTCTCATCTTCGATGTCCTCACAACCATACAACACAGGTTATGGAG CATCCGGTTTAGGGGACTACAGTACTTTCAGACTTTAA
Protein sequence (LotjaGi6g1v0235300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATAEPTPNGTPATATASNPLPSDNSSDVQPPTADAAAATAPSTQEPETEAEDAPDTTADTTPPEKKWPGWPGDCVYRLV VPVGKVGSIIGRKGELIKKICEETRARVRVLEASVGTPDRIVLISGKEELDAALSPAMDAVIRVFKRVSGLSEADGEIKG SAAAATFCSIRLLTAATQAINLIGKQGSTIRAIHENTGASIKVLSGDEVQSFATADERIIELQGEALKVLNALEAVVGHL RKFLVDHSVLPLFEKTYNTPIAQDRQAETWSNKSSLHTTSHNSIFSDMPPSAKRDSVFVDRESQLDSLLPSSTMSLYGQD ASHSNIRSSALSRVGAPIVTTVIQTMQIPLSYAEDIIGIQGKNIDYIRRASGAILIVQESRVPDEIIVEIKGTSSQVQLA QELIQDIINSHREPVASSYGRLDADLRSSYSQMSTAPRFSSSMSSQPYNTGYGASGLGDYSTFRL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 71 | 71 | - | – | |
| MobiDBLite | 1 | 47 | 47 | - | – | |
| PANTHER | 28 | 460 | 433 | 4.8E-182 | – | |
| PANTHER | 28 | 460 | 433 | 4.8E-182 | – | |
| SUPERFAMILY | 68 | 129 | 62 | 1.05E-13 | ||
| SMART | 73 | 146 | 74 | 8.0E-11 | ||
| Gene3D | 74 | 145 | 72 | 1.7E-14 | ||
| ProSiteProfiles | 74 | 141 | 68 | 14.99 | – | |
| CDD | 76 | 145 | 70 | 9.57678E-19 | – | |
| Pfam | 77 | 133 | 57 | 9.3E-13 | ||
| SUPERFAMILY | 166 | 248 | 83 | 1.25E-10 | ||
| SMART | 166 | 241 | 76 | 2.5E-9 | ||
| ProSiteProfiles | 167 | 236 | 70 | 12.747 | – | |
| Gene3D | 167 | 244 | 78 | 5.4E-13 | ||
| CDD | 169 | 237 | 69 | 1.15599E-15 | – | |
| Pfam | 181 | 236 | 56 | 1.7E-9 | ||
| SUPERFAMILY | 337 | 410 | 74 | 2.48E-13 | ||
| Gene3D | 337 | 416 | 80 | 8.6E-12 | ||
| SMART | 340 | 409 | 70 | 3.9E-10 | ||
| ProSiteProfiles | 341 | 404 | 64 | 12.873 | – | |
| CDD | 343 | 405 | 63 | 2.67077E-10 | – | |
| Pfam | 344 | 406 | 63 | 5.3E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi6g1v0235300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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