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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0245100 |
| Transcript ID | LotjaGi6g1v0245100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT3G57430.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic; TrEMBL-Plants: tr|G7IND6|G7IND6_MEDTR PPR containing plant protein; Found in the gene: LotjaGi6g1v0245100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:55754835..55757701) extracted from Lotus japonicus Gifu genome v1.2.
AGTGGTGTAGAGGGTCGTTGAAATGTCATCCTATCTCACTCTCACTCTCACGCCTCCCACTCCTAAACACTCCTCTCCAC CCTCCGCCACCGTCTCCGCCACTCCCACCGCCGCAGAGCCCCGTTCTCCTTCCGCATGGATCGACCATCTTCGCCTCCAA GCTCAATCCTCCTCCTTCCTCCAAGCCATCTCCACCTACGCCAACATGGTCGCCGCCGGCGTCCCCCCCGACAACTTCGC CTTCCCCGCCGTCCTCAAAGCCGCCGCCGGTGTCAATGACCTGAACCTCGGGAAGCAGATTCACGGCCACGTCTTCAAAT TCGGCTACGCTTCCACCTCCGTCGCCGTCGCCAACTCCCTCGTCAACATGTACGGCAAGTGCGGTGACCTCGCCGGTGCC CACCACGTGTTCGACAGAATCTCCGACCGCGACCATGTTTCGTGGAACTCCATGATCGCCGCCGCGTGTCGGTTCGAGGA GTGGGAGCTGTCCCTGCAGTTGCTCCGGCTGATGCTGTCGGAGAATGTCGACCCCACGTCCTTCACTTTGGTCAGCATTG CTCATGCGTGTTCCAACCTGCGTGATGGGTTGAGCTTAGGGAAGCAAGTGCACGCTTACACTTTCAGGAATGGTGATTGG AGGACGTTCACTAACAATGCTTTGGTTACCATGTATGCAAAGTTAGGGAGAATTGATGAAGCTAAGGCTTTGTTTGGTCT GTTTGATGATAAAGACTTGGTGTCTTGGAACACTGTTATAAGCTCACTCTCTCAAAATGATAGATTTGAAGAAGCATTGT TGTTTCTGTATCATATGCTTCAAAGTGGAGTTAGGCCTGATGGGGTTACCTTGGCAAGTGCTCTGCCTGCTTGTTCTCAT TTGGAGATGTTGAGGACTGGAAAGGAAATACATGGTTATGCCTTGAGGAACACAGATTTGATTGATAACTCTTTTGTTGG AAGTGCTTTGGTGGACATGTATTGCAATTGCAAGAAAGCTGATAAGGGCCGATGGGTTTTTGATGGGATATTGAGGAGGA CGGTGGCGGTTTGGAATGCCATGATTGCTGGTTATGCACGCAATGAGTTTGATGATGAAGCTATAAAACTCTTCATTGAG ATGGTTTATGAGTCAGATTTTACTCCGAATTCCACGACTTTATCGAGTCTTTTGCCTGCTTGTGTTCGTTGTAAAGCATT TTTGGACAAGGAAGGCATCCATGGTTATGTAGTGAAAAGGGGGTTTGAGAAGGATAAGTATGTGCAAAATGCACTAATGG ACATGTATTCCAGAATGGGAAGGATTGAGATTTCAAAGAGCATATTTGGCAGCATGGATAGGAGGGATATAGTTTCTTGG AACACGATGATCACTGGTTATGTTGTTTGCGGGCGCCATGATGATGCACTTAATCTCCTGCATGACATGCAGAGAGGTCA AGACGATGAATATGAGGATGATGAAAGCATTCCCCTGAAGCCAAATTCAGTGACTCTGATGACAGTGCTTCCTGGTTGTG CTGCCTTGGCAGCGCTTGGTAAAGGGAAAGAGATTCATGCTTATGCTCTCAAACAAAAGCTGGCAACAGATATTGCTGTG GGGAGCGCACTAATTGACATGTATGCAAAATGTGGTTGCTTGAACCTATCTAGGATAGTCTTTGATCAAATGCCTACAAG AAATGTCATCACTTGGAATGTTCTTATAATGGCTTATGGGATGCATGGTAAAGGAGAAGAAGCTCTGGAGCTTTTTAGGA GAATGGTAGCAGAAAAAGATAGCAATAAGGAAATAAGGCCCAATGAAGTTACCTACATTGCCATTTTTGCAGCTTGCAGT CACTCTGGGATGGTGGATGAAGGCCTTAACTTATTCCACACAATGAAAGCTAACCATGGGATTGAACCGTCATCTGACCA TTATGCTTGCCTTGTGGACTTGCTTGGGCGATCTGGTCGGGTTGAAGAGGCGTATAAACTGATCAAAACAATGCCATCCA ATATGAAAAAGGTAGATGCATGGAGTAGCTTGCTTGGTGCCTGTAAGATCCACCAGAACTTAGAAGTCGGTGAAATTGCA GCGAAGCAACTATTGGTCTTGGAGCCAAATGTGGCTAGCCATTATGTTCTGTTGTCAAACATATACTCTTCAGCTGGACT TTGGGACCAGGCAATGGATATTAGGAAGAAAATGAAGGAAATGGGAGTGAGAAAAGAACCTGGGTGTAGTTGGATTGAGC ACCGTGACGAGGTTCATAAGTTTTTGGCTGGGGATGCTTCACACCCACAAAGTAAAGAACTCCATGAATATCTTGAAAAT CTGTTACAAAGAATGAGAAAGGAGGGGTATGTACCTGATACTTCTTGTGTGCTTCACGATGTGGATGATGAAGAGAAAGA AACAATGCTCTGTGGGCATAGTGAGAGATTGGCAATAGCTTTTGGCCTTTTGAATACCCCTCCTGGAACTACCATTAGAG TTACCAAAAACCTTCGGGTTTGCAATGACTGCCATGTTGCCACTAAATTCATATCAAAGATTGTGGACAGGGAAATCATT CTTAGAGATGTTAGAAGGTTCCATCATTTCAGAAATGGAACTTGCTCTTGTGGGGATTATTGGTAAAAAAAAATGATTAT GATTCTTTCTACTTCATTTACCTCAACCTCCTCTTGCTCCCAGCTTAAATCTTGTATCATTGAACCTGTGTAGTTAATCT GGATAAGTAACAATCTGTACAGAATTCCATACTATATTCTGTTGATCTCTAATATTATTTTCATAAACGCCTATGCAGCA GTTTCTCCCGGTTCTTTACCACAATTACCGAACACTCCGGTTGTATTCCTACAATCCTACTAGTTAT
CDS sequence (LotjaGi6g1v0245100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCATCCTATCTCACTCTCACTCTCACGCCTCCCACTCCTAAACACTCCTCTCCACCCTCCGCCACCGTCTCCGCCAC TCCCACCGCCGCAGAGCCCCGTTCTCCTTCCGCATGGATCGACCATCTTCGCCTCCAAGCTCAATCCTCCTCCTTCCTCC AAGCCATCTCCACCTACGCCAACATGGTCGCCGCCGGCGTCCCCCCCGACAACTTCGCCTTCCCCGCCGTCCTCAAAGCC GCCGCCGGTGTCAATGACCTGAACCTCGGGAAGCAGATTCACGGCCACGTCTTCAAATTCGGCTACGCTTCCACCTCCGT CGCCGTCGCCAACTCCCTCGTCAACATGTACGGCAAGTGCGGTGACCTCGCCGGTGCCCACCACGTGTTCGACAGAATCT CCGACCGCGACCATGTTTCGTGGAACTCCATGATCGCCGCCGCGTGTCGGTTCGAGGAGTGGGAGCTGTCCCTGCAGTTG CTCCGGCTGATGCTGTCGGAGAATGTCGACCCCACGTCCTTCACTTTGGTCAGCATTGCTCATGCGTGTTCCAACCTGCG TGATGGGTTGAGCTTAGGGAAGCAAGTGCACGCTTACACTTTCAGGAATGGTGATTGGAGGACGTTCACTAACAATGCTT TGGTTACCATGTATGCAAAGTTAGGGAGAATTGATGAAGCTAAGGCTTTGTTTGGTCTGTTTGATGATAAAGACTTGGTG TCTTGGAACACTGTTATAAGCTCACTCTCTCAAAATGATAGATTTGAAGAAGCATTGTTGTTTCTGTATCATATGCTTCA AAGTGGAGTTAGGCCTGATGGGGTTACCTTGGCAAGTGCTCTGCCTGCTTGTTCTCATTTGGAGATGTTGAGGACTGGAA AGGAAATACATGGTTATGCCTTGAGGAACACAGATTTGATTGATAACTCTTTTGTTGGAAGTGCTTTGGTGGACATGTAT TGCAATTGCAAGAAAGCTGATAAGGGCCGATGGGTTTTTGATGGGATATTGAGGAGGACGGTGGCGGTTTGGAATGCCAT GATTGCTGGTTATGCACGCAATGAGTTTGATGATGAAGCTATAAAACTCTTCATTGAGATGGTTTATGAGTCAGATTTTA CTCCGAATTCCACGACTTTATCGAGTCTTTTGCCTGCTTGTGTTCGTTGTAAAGCATTTTTGGACAAGGAAGGCATCCAT GGTTATGTAGTGAAAAGGGGGTTTGAGAAGGATAAGTATGTGCAAAATGCACTAATGGACATGTATTCCAGAATGGGAAG GATTGAGATTTCAAAGAGCATATTTGGCAGCATGGATAGGAGGGATATAGTTTCTTGGAACACGATGATCACTGGTTATG TTGTTTGCGGGCGCCATGATGATGCACTTAATCTCCTGCATGACATGCAGAGAGGTCAAGACGATGAATATGAGGATGAT GAAAGCATTCCCCTGAAGCCAAATTCAGTGACTCTGATGACAGTGCTTCCTGGTTGTGCTGCCTTGGCAGCGCTTGGTAA AGGGAAAGAGATTCATGCTTATGCTCTCAAACAAAAGCTGGCAACAGATATTGCTGTGGGGAGCGCACTAATTGACATGT ATGCAAAATGTGGTTGCTTGAACCTATCTAGGATAGTCTTTGATCAAATGCCTACAAGAAATGTCATCACTTGGAATGTT CTTATAATGGCTTATGGGATGCATGGTAAAGGAGAAGAAGCTCTGGAGCTTTTTAGGAGAATGGTAGCAGAAAAAGATAG CAATAAGGAAATAAGGCCCAATGAAGTTACCTACATTGCCATTTTTGCAGCTTGCAGTCACTCTGGGATGGTGGATGAAG GCCTTAACTTATTCCACACAATGAAAGCTAACCATGGGATTGAACCGTCATCTGACCATTATGCTTGCCTTGTGGACTTG CTTGGGCGATCTGGTCGGGTTGAAGAGGCGTATAAACTGATCAAAACAATGCCATCCAATATGAAAAAGGTAGATGCATG GAGTAGCTTGCTTGGTGCCTGTAAGATCCACCAGAACTTAGAAGTCGGTGAAATTGCAGCGAAGCAACTATTGGTCTTGG AGCCAAATGTGGCTAGCCATTATGTTCTGTTGTCAAACATATACTCTTCAGCTGGACTTTGGGACCAGGCAATGGATATT AGGAAGAAAATGAAGGAAATGGGAGTGAGAAAAGAACCTGGGTGTAGTTGGATTGAGCACCGTGACGAGGTTCATAAGTT TTTGGCTGGGGATGCTTCACACCCACAAAGTAAAGAACTCCATGAATATCTTGAAAATCTGTTACAAAGAATGAGAAAGG AGGGGTATGTACCTGATACTTCTTGTGTGCTTCACGATGTGGATGATGAAGAGAAAGAAACAATGCTCTGTGGGCATAGT GAGAGATTGGCAATAGCTTTTGGCCTTTTGAATACCCCTCCTGGAACTACCATTAGAGTTACCAAAAACCTTCGGGTTTG CAATGACTGCCATGTTGCCACTAAATTCATATCAAAGATTGTGGACAGGGAAATCATTCTTAGAGATGTTAGAAGGTTCC ATCATTTCAGAAATGGAACTTGCTCTTGTGGGGATTATTGGTAA
Protein sequence (LotjaGi6g1v0245100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSYLTLTLTPPTPKHSSPPSATVSATPTAAEPRSPSAWIDHLRLQAQSSSFLQAISTYANMVAAGVPPDNFAFPAVLKA AAGVNDLNLGKQIHGHVFKFGYASTSVAVANSLVNMYGKCGDLAGAHHVFDRISDRDHVSWNSMIAAACRFEEWELSLQL LRLMLSENVDPTSFTLVSIAHACSNLRDGLSLGKQVHAYTFRNGDWRTFTNNALVTMYAKLGRIDEAKALFGLFDDKDLV SWNTVISSLSQNDRFEEALLFLYHMLQSGVRPDGVTLASALPACSHLEMLRTGKEIHGYALRNTDLIDNSFVGSALVDMY CNCKKADKGRWVFDGILRRTVAVWNAMIAGYARNEFDDEAIKLFIEMVYESDFTPNSTTLSSLLPACVRCKAFLDKEGIH GYVVKRGFEKDKYVQNALMDMYSRMGRIEISKSIFGSMDRRDIVSWNTMITGYVVCGRHDDALNLLHDMQRGQDDEYEDD ESIPLKPNSVTLMTVLPGCAALAALGKGKEIHAYALKQKLATDIAVGSALIDMYAKCGCLNLSRIVFDQMPTRNVITWNV LIMAYGMHGKGEEALELFRRMVAEKDSNKEIRPNEVTYIAIFAACSHSGMVDEGLNLFHTMKANHGIEPSSDHYACLVDL LGRSGRVEEAYKLIKTMPSNMKKVDAWSSLLGACKIHQNLEVGEIAAKQLLVLEPNVASHYVLLSNIYSSAGLWDQAMDI RKKMKEMGVRKEPGCSWIEHRDEVHKFLAGDASHPQSKELHEYLENLLQRMRKEGYVPDTSCVLHDVDDEEKETMLCGHS ERLAIAFGLLNTPPGTTIRVTKNLRVCNDCHVATKFISKIVDREIILRDVRRFHHFRNGTCSCGDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 33 | 33 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 17 | 17 | - | – | |
| ProSiteProfiles | 35 | 69 | 35 | 6.095 | ||
| Gene3D | 42 | 204 | 163 | 8.1E-25 | ||
| PANTHER | 55 | 185 | 131 | 9.7E-153 | – | |
| ProSiteProfiles | 70 | 104 | 35 | 5.053 | ||
| ProSiteProfiles | 106 | 136 | 31 | 7.596 | ||
| Pfam | 111 | 136 | 26 | 0.2 | ||
| ProSiteProfiles | 137 | 171 | 35 | 10.709 | ||
| Pfam | 139 | 169 | 31 | 6.7E-4 | ||
| TIGRFAM | 139 | 172 | 34 | 2.2E-4 | ||
| PANTHER | 191 | 295 | 105 | 9.7E-153 | – | |
| Gene3D | 205 | 298 | 94 | 2.8E-17 | ||
| ProSiteProfiles | 207 | 237 | 31 | 7.322 | ||
| Pfam | 212 | 232 | 21 | 0.068 | ||
| SUPERFAMILY | 213 | 726 | 514 | 9.87E-6 | ||
| ProSiteProfiles | 238 | 272 | 35 | 11.97 | ||
| Pfam | 240 | 270 | 31 | 1.3E-5 | ||
| TIGRFAM | 240 | 273 | 34 | 2.7E-7 | ||
| PANTHER | 292 | 392 | 101 | 9.7E-153 | – | |
| Gene3D | 299 | 397 | 99 | 1.0E-15 | ||
| ProSiteProfiles | 309 | 339 | 31 | 6.851 | ||
| ProSiteProfiles | 340 | 375 | 36 | 9.624 | ||
| Pfam | 340 | 388 | 49 | 5.2E-8 | ||
| TIGRFAM | 343 | 376 | 34 | 2.2E-4 | ||
| ProSiteProfiles | 376 | 410 | 35 | 6.533 | ||
| PANTHER | 397 | 501 | 105 | 9.7E-153 | – | |
| Gene3D | 398 | 503 | 106 | 4.4E-16 | ||
| ProSiteProfiles | 411 | 441 | 31 | 7.958 | ||
| Pfam | 416 | 443 | 28 | 0.057 | ||
| ProSiteProfiles | 442 | 472 | 31 | 10.391 | ||
| Pfam | 444 | 471 | 28 | 6.2E-7 | ||
| TIGRFAM | 444 | 471 | 28 | 7.8E-6 | ||
| PANTHER | 495 | 725 | 231 | 9.7E-153 | – | |
| Gene3D | 504 | 624 | 121 | 3.5E-26 | ||
| ProSiteProfiles | 523 | 553 | 31 | 6.73 | ||
| Pfam | 528 | 554 | 27 | 0.35 | ||
| ProSiteProfiles | 554 | 584 | 31 | 10.611 | ||
| TIGRFAM | 556 | 584 | 29 | 4.5E-6 | ||
| Pfam | 556 | 583 | 28 | 2.6E-8 | ||
| Pfam | 587 | 642 | 56 | 0.0023 | ||
| ProSiteProfiles | 594 | 629 | 36 | 9.032 | ||
| TIGRFAM | 596 | 630 | 35 | 1.3E-4 | ||
| Gene3D | 625 | 782 | 158 | 4.6E-13 | ||
| ProSiteProfiles | 630 | 660 | 31 | 8.331 | ||
| ProSiteProfiles | 697 | 731 | 35 | 8.342 | ||
| Pfam | 701 | 729 | 29 | 0.0067 | ||
| Pfam | 733 | 857 | 125 | 5.1E-48 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi6g1v0245100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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