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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0245600 |
| Transcript ID | LotjaGi6g1v0245600.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar-sorting receptor; TAIR: AT1G30900.1 VACUOLAR SORTING RECEPTOR 6; Swiss-Prot: sp|Q9FYH7|VSR6_ARATH Vacuolar-sorting receptor 6; TrEMBL-Plants: tr|I1L142|I1L142_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0245600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:55776213..55782747) extracted from Lotus japonicus Gifu genome v1.2.
GAGGCATAACTATTGGCCATAATTTTGTGAGAGGGAAATAGAGTTATAGCATGTTTGAGTAAATAATTTAATGAAGAGTA GTGTTTTGTAGTAGTGATTTGCATTGTTTGGGTGTATATTGAATTTTTTTTTCAGTCGTCAAAGAAAAAAATATTAAAAA AACTTGTTTCTTTCTTTGTGAATTTGTGTAGTAGTTCCCCTGACTCCGTCCACCACGTCCATCTTCCTTTCTCTAGTCAT TACCCCCTCTTTACGTCACAACTTGTTGATTGTGAAACACAAACAAACACCTTAACCAAACCAAACTGTGATTGTGTTTG TGTTTGTGCGTGTGTGTCTTGCAAAAAACTCTCCACCTGTAAAGAAGACCAAGACATTTTGCAAAGTCTTCACGCACACA CGTCCTCCTTATTACTCTTCTTCCTCTCTTCCTCCTTTGTTTTCTCCACCACCAAACAAAGCAAAACTCTGCATGGCTTT TCCCCTCTTCACCTTGCTCTTCTTCCTTCTGAGCTCAGTTCATGGCCGCTTTGTGGTGGAGAAGAACAGCATCACCGTTC TGTCTCCCCACAAGCTCAGGGCCAAGCGTGATGGCGCCATAGGAAACTTTGGCCTTCCTAACTATGGAGGATACATCATA GGGTCACTTGTTTATCCAGACAAAGACTCTCATGGGTGCCACGAATTTGAGGGTGATAAGCCTTTCAAGTTTCGCTCTAA TCGCCCTACGATTGTTCTCATTGATCGTGGAGGTATTTCCAATGTCCAATCCTCTTCCTTCTTTTCAACCGTTGACTTTC TTTATTTATCATCTGCTCTAAATTTCATCTACCCCTACCATGCTAATTTAATGTTAGCTTTCTAATTATGCCACTATGCT GTTTTATTTATTCAATTTACTCTTATATTATAAATATTAACCTCTGCTCTGTTTCCCCCTTTTTATTGCTTTTTGCTGTT TCATAGATCCCCCCGTTTAGATGCAGAAGCTTATTTGACTTTATATTTTAGCATAAGCACTCATGCTGACTTTATATTAT AGCATACGCGGTCATGCATGTGTTTCAGAGAGTTTATGTAAATAGTTTATGACATTCTTATAAGTTGTTTTGAGGTTATT TTCGTAAGCTGTTTGGATTAACTTATAAATAAGAGTTTATGCTTACCTATCACATCTTTTCAGCTTATTTCAATAAACGC TTATTTCCATAAGTACTTAATTAAGTTATTTTCTCAAACGCACCTACAGAACACTTATTGGAGCTTATTATCTACTAGAA AAAAGCACCAAATAAACTCTAATAAGTACTATTTGTTCTGCATCTAAATGGGGTCATGGTCCTGCCATTAGGTAGTTATA TTAAGCCTAATAGGGCCTGTTATGAGCGGCTGTAGATATGTTGCTTCAATGATATAATAGGTTCATCCATTGATAGATTC TTTTCTCATATTACTTTTCTTATTTTTCTTGAATTTCTTTTATTTTTGTTAATGAAAATATAGGCTACTTCAGCAATTCA CTGGTAAAGTACTTTTTTTGACCTTTGATCCTCGTTTTCATAAGAATCTCTAATTAATCTCTAAACTACATCATAATATA TTTTTCTTGCTTTTATGATATCCAATCTGTCTCTTGAATGCCAACAACAGAACTAGTCTTAAAGGAAAAAGTTCCTTACA TATGATTGATTAAAAAACCAATAATAAAAGCTTCAAGAATGCTTCTGTATTAATTCTTTGAAATCAAGTTTCATAATGCT TACTGGCAATGGTTATTTGCAATTGTAGAGTGTTACTTTGCCTTGAAGGTGTGGCATGCCCAACTAGCGGGAGCTGCAGC AGTTTTAGTGACTGATAGCATAGAGGAGTCCCTAATAACCATGGATTCTCCTGAGGAGAGCCTTGATGCTGACGGCTACA TAGAGAAGATTGTGATTCCATCAGCTCTGATAGAGAAGTCCTTTGGTGATGCTTTGAAGGAAGCTTTAAACAACAAAGAT GAAGTTTTGCTAAGAATAGACTGGAGAGAGTCAATGCCTCACCCTGATGACAGGGTTGAGTATGAGTTCTGGACTAACAG TAATGACGAATGTGGAGCTCGCTGCGATGAGCAGATGAATTTTGTGAAGAATTTCAAGGGTCATGCTCAGATTCTTGAGA GGGGTGGTTATACCTTATTTACTCCACACTATATTACTTGGTTTTGTCCAAGGCCTTTTGTTCAAAGCAGTCAGTGTAAG TCCCAATGTATAAACAATGGAAGATATTGTGCGCCGGATCCGGAGAAGGATTTTGGAGAGGGATATCAAGGGAAGGATGT GGTGTATGAGAATCTGAGGCAGCTTTGTGTCCATAGAGTTGCGAACGAGAGCAGCCGTTCGTGGGTCTGGTGGGATTATG TGACAGATTTCCATGTCCGGTGTTCTATGAAGGAGAAAAGATACAGCAAAGAATGTGCTGAAACTGTCATGGAATCATTA GGTAAATGCCATTTTTTGATATTTTTGTGCATTGGATTCTGTTGTTTTCTCTTATTTTTAAAACGTTTGATCTTAATATT ACAGATCTTCCAATTGAGAAAATTAAGAAATGCATGGGTGACCCTGAAGCAGATGTTGAGAATGAAGTGTTAAAGAATGA GCAACAAGTCCAGGTCAAATATTTAATATTTACTGCTATGCCTTTTTAAAATTAATAAAATCTGTAAACTGACATCAGAA ATGAAGCACCAGATCCAGGTGATTAACTGATTTTTGCTTGATTATCAAATATTTCATATTCTGATGTTTCACTTGTGATA TTCAGGTTGGGAGAGGATCTCGTGGTGATGTCACTATCTTGCCAACATTGGTTATAAATAATGTCCAATATAGAGGTTAG TTACTTAGAGTCTGTTTAGATAAGGACCAAAGAGCACTTATTGGAGCTTCTCTACTGGAAAAAATGCACAAGATAAGCTC CAATAAGTGCTCTTTGGTCCGCAACCAAATGGACGCTTAAATTTCTATTCAATAGATATTCTGTATGAATGCTCGCAAGT GTAAGAAGGAAAATTAGAGAGAATTTCTGTCCTGAAGATTTTGTTTGTTTTGTATGAAGGAAAATTGGAGAGAACTTCTG TCCTGAAGGCTGTATGTGCAGGATTTAAGGAGAGTACTGAACCTCCAGTTTGTTTAAGTGGAGGTAAGTGTGCTTAGTAT TTCATTAAATGAACTGCACCGATGATACATTCTTTGAGTACTTAAAATCTTCTCTAAGAGTGGTATTCTGAACTTTACAT ACTGGTTTAACAGATATTGAGACTAATGAGTGCCTTGAAAGAAATGGAGGCTGCTGGCAAGACAAAAATGCTAGCATAAG TGCTTGCAAGGTATAGATAAGAAATTTCTAGCGCCACTTTTTCACCCAATTATAATTTCTATGTGGTTGGCTGCAAGCTA AACCATTATCTTTGCCAGGATACTTTCAGGGGAAGAGTTTGTGAGTGCCCTGTCGTGAATGGTGTTCAGTATAGAGGTGA TGGTTATGCATCATGTGAAGGTATGCCTTTTCATATTTAACAAGTTTCCTCTTCCTTTTACTTTGGAGTATCAGAGTCTT ATATACTCTATCTCATAAAACATGATAGCTATGGAATCCTGAGATTAAGATAACATTTATTTTATTATTGGTAATTCACC CTATATGCAACTTTCAGGTCAAAAGTTTAAGAAAATTCATTTCATATTGTAATATCAGTCCAAATAAAGAAGTTCTGATA CTTTATTACAATGTGGATGGAGATTTGTTGCTGAGATGCTTACCCTTTTCCTTATTTGACAGCTTTTGGACCTGCAAGGT GTTCTCTAAACCATGGAGGTTGTTGGTCCGAAACTAGAGATAAATTAGCTTTCTCAGCTTGCTCAGTTCAGTACTACTTA TCCAAATCTTCATTTTTTTTTTGGTTGGTAAAGATTTATGGTACCACTTTCCTGAACATGCCTCAAGGCTAACTGGATTA TCTTGATTTCCCTTTTTGTATAAAGGAATCAGTGGTAAATGGCTGTAAGTGTCCAGTTGGGTTTCGCGGAGACGGTATTA ATAAATGTGAAGGTAACATTTGTTTTCACTGTGGCAATTTCAAAATTTATTTCTCTTTTTCTATGATCAATGTTGGAAAA ATATAACTCTATTCAAAACCTCTTTTGTTCTGATCCAGATGTTGATGAATGTAAGGAAAAAAGTGCATGTCAGTGTGATG GCTGCAGCTGCAAGAACACTTGGGGCGGTTACGATTGTAAGTGCAAAGGAGATCTTCTATACATAAAGGACCAAGATACT TGTATTGGTAAGATTTTAAGATCAAACTATGAAAGATTCTTGTTAGTGAGAAATAGTAAATAGCATCGCAGAAAATTAAG ATCACAGTACATGATTAGAATTTTGCTTTCGATCTCGCAGAAAGAAGTGGATCGAAATCTGGACGGTTTCTTGCCTTTGT GGTCATAGCAGTTGTTGTGGTGGCTGGTCTAGCTGGCTACATATTCTACAAATACAGGCTCAGGGTAAGCCTATTCATTC TCAACTACAAATTATGAACACACCATTTATGTTAAATTGGTATGTAATTACATTTTTCTTGTTTTTGTAGACTTACATGG ACTCAGAGATCATGGCTATCATGTCGCAATACATGCCACTGGACCAGCAAAATAATGTAGTTCATGCTGAAGCTCAGCCT TTACGACAAGGCGAGGTATAAGGTATTCAATTATTCATCTCCTAAACTGCTTCTTTTGAGATTACTTTTCTGGAAAACAA TCTTCTTATTTTGCTTCTATCTGCATTCTGCCAACAGAGATAGGTCAAGGGATTCTGTTTCACAGTTAATCCACATGAGA GATGGATTGTAAGCATTGGCTATATGCATTTCAATCCATTTGACAGGGAGGGAGGCTCTAGTACTTTACAGTAGGAAAAT TATGTGAACGATTTCATACATACAGAAATTTCTTCAGAAAATAACTCACAGTTTCCAGTTCCACAGTTTGTAAATAGAAC TGGTGAGATGTAAATGTAGACTTGAGATAACATTGATACAAAAAGTTGCCGGTGCAAATAATACATCACTCTGTCTCTTC TGTTTGGCCTAAATACAATCTATGAATAAACAATCGAATAATTCACTTACCATTTTACCTAATAGGAAATTCTTGAGGAT GATTAATCAATTGTCAAATACATATATGATTCATAGATACAAGATTATTCACTTCCTGTGCTGGCGTGTTAATGAACTAG GTAGGATACCAATTACCATGGCGGATAACAAAGTCACTTTCAAATTACAAGCTGTATATTGTAGCTTCTCAATAGAGGAC CGAGTCTCGCGGTAAGGTTGCTGTCATGTCGGTGGAATTAGCCTCTTGCAAAAATGCAATATAAGCACCAAATTTGCCCT TTATATTGTAGCTTCTCATCAACGATGCTTAAGATTTCAAGCATGAGGTCTCTCAAACATACCCGGCCTATTTGCGTGGA AACAAAATTCAAAACATTACACAACACAATAATCTTAAAAGTTGCATTTTGGCCTGTCCGGAAGAGGAAGCTTATTTGAA TTTGGCTTAATTGCACTTTTGGTCCCCCATGAATAACAAATGTGCATTTTTGGTCCTAAACGTTTGAAAATAGCAGAATC AGTCCCACACGTTTGTCTCCGTTAGCGTTTTTGGTCCCTCCGTTAAAATTCTAACAGAAGTTACTTATTGCACCCCCATT TTACTATTCTCACCCCTCACTAGGACTAGAAATGCACATTTATCATTCGTGGGGACCAAAAGTGCAATTAAGTTTAAAAA ATAAAAAAACCAAGAAACCCATCAACCACTTCTTCTTATTCTTCTTCTCCCAATTCCCATCTCTCCTTATGCTATGTTAC CTGTCCATACCCAGGTGTAGGTTCATCATTAACTTCCAATGAGAACCTGTAAGAAAAAATAAGTATAAGTTTGAAAACTA ACACTGCGTATCTCACATGTTTGTGCATGATGAGTACTTGCAGGCCCTGGCAATAAAGACTTGCAACCATGTGTGTGAAT GGATAAAAGATGTGGAAAATGAAATATTTTTGCTAGGAGCTAGCCCCTTTTCATGGTGATTCCCATGCAAATACTGTAAA CATGTACAATAATTTTAATTTAATACAGTGATGCCAACAAGAAGTGGAAGCCATTGTGGATCATTAAAAGGAAATATTTC TCTAATCATTTAAGAACTTGATGGAGAAGAAGAAGTGGTTGGTGGGTTTCTTGGTTTTTTTATTTTTTAGGCTTAATTGC ATTTTTGGTCCCCCACGAATGATAATGTGCATTTATAGTCCCAGTGAGGGGTGAGAATAGTAAAATGGGGTGCAATAAGT AACTTCTATTAGAATTTTAACGGAGGGGACCAAAAACGCTAACGGAGACAAACGTGTGGGACTGATTCTGCTATTTTCAA ACGTTTAGGACAAAAAATGCACATTTATCATTCGTGGGGGACCAAAAATGCAATT
CDS sequence (LotjaGi6g1v0245600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTTCCCCTCTTCACCTTGCTCTTCTTCCTTCTGAGCTCAGTTCATGGCCGCTTTGTGGTGGAGAAGAACAGCAT CACCGTTCTGTCTCCCCACAAGCTCAGGGCCAAGCGTGATGGCGCCATAGGAAACTTTGGCCTTCCTAACTATGGAGGAT ACATCATAGGGTCACTTGTTTATCCAGACAAAGACTCTCATGGGTGCCACGAATTTGAGGGTGATAAGCCTTTCAAGTTT CGCTCTAATCGCCCTACGATTGTTCTCATTGATCGTGGAGAGTGTTACTTTGCCTTGAAGGTGTGGCATGCCCAACTAGC GGGAGCTGCAGCAGTTTTAGTGACTGATAGCATAGAGGAGTCCCTAATAACCATGGATTCTCCTGAGGAGAGCCTTGATG CTGACGGCTACATAGAGAAGATTGTGATTCCATCAGCTCTGATAGAGAAGTCCTTTGGTGATGCTTTGAAGGAAGCTTTA AACAACAAAGATGAAGTTTTGCTAAGAATAGACTGGAGAGAGTCAATGCCTCACCCTGATGACAGGGTTGAGTATGAGTT CTGGACTAACAGTAATGACGAATGTGGAGCTCGCTGCGATGAGCAGATGAATTTTGTGAAGAATTTCAAGGGTCATGCTC AGATTCTTGAGAGGGGTGGTTATACCTTATTTACTCCACACTATATTACTTGGTTTTGTCCAAGGCCTTTTGTTCAAAGC AGTCAGTGTAAGTCCCAATGTATAAACAATGGAAGATATTGTGCGCCGGATCCGGAGAAGGATTTTGGAGAGGGATATCA AGGGAAGGATGTGGTGTATGAGAATCTGAGGCAGCTTTGTGTCCATAGAGTTGCGAACGAGAGCAGCCGTTCGTGGGTCT GGTGGGATTATGTGACAGATTTCCATGTCCGGTGTTCTATGAAGGAGAAAAGATACAGCAAAGAATGTGCTGAAACTGTC ATGGAATCATTAGATCTTCCAATTGAGAAAATTAAGAAATGCATGGGTGACCCTGAAGCAGATGTTGAGAATGAAGTGTT AAAGAATGAGCAACAAGTCCAGGTTGGGAGAGGATCTCGTGGTGATGTCACTATCTTGCCAACATTGGTTATAAATAATG TCCAATATAGAGGAAAATTGGAGAGAACTTCTGTCCTGAAGGCTGTATGTGCAGGATTTAAGGAGAGTACTGAACCTCCA GTTTGTTTAAGTGGAGATATTGAGACTAATGAGTGCCTTGAAAGAAATGGAGGCTGCTGGCAAGACAAAAATGCTAGCAT AAGTGCTTGCAAGGATACTTTCAGGGGAAGAGTTTGTGAGTGCCCTGTCGTGAATGGTGTTCAGTATAGAGGTGATGGTT ATGCATCATGTGAAGCTTTTGGACCTGCAAGGTGTTCTCTAAACCATGGAGGTTGTTGGTCCGAAACTAGAGATAAATTA GCTTTCTCAGCTTGCTCAGAATCAGTGGTAAATGGCTGTAAGTGTCCAGTTGGGTTTCGCGGAGACGGTATTAATAAATG TGAAGATGTTGATGAATGTAAGGAAAAAAGTGCATGTCAGTGTGATGGCTGCAGCTGCAAGAACACTTGGGGCGGTTACG ATTGTAAGTGCAAAGGAGATCTTCTATACATAAAGGACCAAGATACTTGTATTGAAAGAAGTGGATCGAAATCTGGACGG TTTCTTGCCTTTGTGGTCATAGCAGTTGTTGTGGTGGCTGGTCTAGCTGGCTACATATTCTACAAATACAGGCTCAGGAC TTACATGGACTCAGAGATCATGGCTATCATGTCGCAATACATGCCACTGGACCAGCAAAATAATGTAGTTCATGCTGAAG CTCAGCCTTTACGACAAGGCGAGGTATAA
Protein sequence (LotjaGi6g1v0245600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFPLFTLLFFLLSSVHGRFVVEKNSITVLSPHKLRAKRDGAIGNFGLPNYGGYIIGSLVYPDKDSHGCHEFEGDKPFKF RSNRPTIVLIDRGECYFALKVWHAQLAGAAAVLVTDSIEESLITMDSPEESLDADGYIEKIVIPSALIEKSFGDALKEAL NNKDEVLLRIDWRESMPHPDDRVEYEFWTNSNDECGARCDEQMNFVKNFKGHAQILERGGYTLFTPHYITWFCPRPFVQS SQCKSQCINNGRYCAPDPEKDFGEGYQGKDVVYENLRQLCVHRVANESSRSWVWWDYVTDFHVRCSMKEKRYSKECAETV MESLDLPIEKIKKCMGDPEADVENEVLKNEQQVQVGRGSRGDVTILPTLVINNVQYRGKLERTSVLKAVCAGFKESTEPP VCLSGDIETNECLERNGGCWQDKNASISACKDTFRGRVCECPVVNGVQYRGDGYASCEAFGPARCSLNHGGCWSETRDKL AFSACSESVVNGCKCPVGFRGDGINKCEDVDECKEKSACQCDGCSCKNTWGGYDCKCKGDLLYIKDQDTCIERSGSKSGR FLAFVVIAVVVVAGLAGYIFYKYRLRTYMDSEIMAIMSQYMPLDQQNNVVHAEAQPLRQGEV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 18 | 18 | - | – | |
| Phobius | 1 | 18 | 18 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 2 | 13 | 12 | - | – | |
| Phobius | 14 | 18 | 5 | - | – | |
| Gene3D | 17 | 179 | 163 | 4.4E-47 | – | |
| Phobius | 19 | 560 | 542 | - | – | |
| PANTHER | 23 | 609 | 587 | 4.0E-235 | – | |
| PANTHER | 23 | 609 | 587 | 4.0E-235 | – | |
| Pfam | 57 | 156 | 100 | 1.5E-11 | ||
| SUPERFAMILY | 86 | 166 | 81 | 9.02E-8 | – | |
| Gene3D | 456 | 551 | 96 | 2.9E-6 | – | |
| CDD | 509 | 538 | 30 | 5.65228E-5 | – | |
| SMART | 509 | 551 | 43 | 0.0013 | ||
| ProSitePatterns | 509 | 535 | 27 | - | ||
| TMHMM | 559 | 581 | 23 | - | – | |
| Phobius | 561 | 581 | 21 | - | – | |
| Phobius | 582 | 622 | 41 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). |
Expression pattern of LotjaGi6g1v0245600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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