Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0245600 |
| Transcript ID | LotjaGi6g1v0245600.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar-sorting receptor; TAIR: AT1G30900.1 VACUOLAR SORTING RECEPTOR 6; Swiss-Prot: sp|Q9FYH7|VSR6_ARATH Vacuolar-sorting receptor 6; TrEMBL-Plants: tr|I1L142|I1L142_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0245600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:55777905..55782290) extracted from Lotus japonicus Gifu genome v1.2.
AAAGCAAAACTCTGCATGGCTTTTCCCCTCTTCACCTTGCTCTTCTTCCTTCTGAGCTCAGTTCATGGCCGCTTTGTGGT GGAGAAGAACAGCATCACCGTTCTGTCTCCCCACAAGCTCAGGGCCAAGCGTGATGGCGCCATAGGAAACTTTGGCCTTC CTAACTATGGAGGATACATCATAGGGTCACTTGTTTATCCAGACAAAGACTCTCATGGGTGCCACGAATTTGAGGGTGAT AAGCCTTTCAAGTTTCGCTCTAATCGCCCTACGATTGTTCTCATTGATCGTGGAGGTATTTCCAATGTCCAATCCTCTTC CTTCTTTTCAACCGTTGACTTTCTTTATTTATCATCTGCTCTAAATTTCATCTACCCCTACCATGCTAATTTAATGTTAG CTTTCTAATTATGCCACTATGCTGTTTTATTTATTCAATTTACTCTTATATTATAAATATTAACCTCTGCTCTGTTTCCC CCTTTTTATTGCTTTTTGCTGTTTCATAGATCCCCCCGTTTAGATGCAGAAGCTTATTTGACTTTATATTTTAGCATAAG CACTCATGCTGACTTTATATTATAGCATACGCGGTCATGCATGTGTTTCAGAGAGTTTATGTAAATAGTTTATGACATTC TTATAAGTTGTTTTGAGGTTATTTTCGTAAGCTGTTTGGATTAACTTATAAATAAGAGTTTATGCTTACCTATCACATCT TTTCAGCTTATTTCAATAAACGCTTATTTCCATAAGTACTTAATTAAGTTATTTTCTCAAACGCACCTACAGAACACTTA TTGGAGCTTATTATCTACTAGAAAAAAGCACCAAATAAACTCTAATAAGTACTATTTGTTCTGCATCTAAATGGGGTCAT GGTCCTGCCATTAGGTAGTTATATTAAGCCTAATAGGGCCTGTTATGAGCGGCTGTAGATATGTTGCTTCAATGATATAA TAGGTTCATCCATTGATAGATTCTTTTCTCATATTACTTTTCTTATTTTTCTTGAATTTCTTTTATTTTTGTTAATGAAA ATATAGGCTACTTCAGCAATTCACTGGTAAAGTACTTTTTTTGACCTTTGATCCTCGTTTTCATAAGAATCTCTAATTAA TCTCTAAACTACATCATAATATATTTTTCTTGCTTTTATGATATCCAATCTGTCTCTTGAATGCCAACAACAGAACTAGT CTTAAAGGAAAAAGTTCCTTACATATGATTGATTAAAAAACCAATAATAAAAGCTTCAAGAATGCTTCTGTATTAATTCT TTGAAATCAAGTTTCATAATGCTTACTGGCAATGGTTATTTGCAATTGTAGAGTGTTACTTTGCCTTGAAGGTGTGGCAT GCCCAACTAGCGGGAGCTGCAGCAGTTTTAGTGACTGATAGCATAGAGGAGTCCCTAATAACCATGGATTCTCCTGAGGA GAGCCTTGATGCTGACGGCTACATAGAGAAGATTGTGATTCCATCAGCTCTGATAGAGAAGTCCTTTGGTGATGCTTTGA AGGAAGCTTTAAACAACAAAGATGAAGTTTTGCTAAGAATAGACTGGAGAGAGTCAATGCCTCACCCTGATGACAGGGTT GAGTATGAGTTCTGGACTAACAGTAATGACGAATGTGGAGCTCGCTGCGATGAGCAGATGAATTTTGTGAAGAATTTCAA GGGTCATGCTCAGATTCTTGAGAGGGGTGGTTATACCTTATTTACTCCACACTATATTACTTGGTTTTGTCCAAGGCCTT TTGTTCAAAGCAGTCAGTGTAAGTCCCAATGTATAAACAATGGAAGATATTGTGCGCCGGATCCGGAGAAGGATTTTGGA GAGGGATATCAAGGGAAGGATGTGGTGTATGAGAATCTGAGGCAGCTTTGTGTCCATAGAGTTGCGAACGAGAGCAGCCG TTCGTGGGTCTGGTGGGATTATGTGACAGATTTCCATGTCCGGTGTTCTATGAAGGAGAAAAGATACAGCAAAGAATGTG CTGAAACTGTCATGGAATCATTAGGTAAATGCCATTTTTTGATATTTTTGTGCATTGGATTCTGTTGTTTTCTCTTATTT TTAAAACGTTTGATCTTAATATTACAGATCTTCCAATTGAGAAAATTAAGAAATGCATGGGTGACCCTGAAGCAGATGTT GAGAATGAAGTGTTAAAGAATGAGCAACAAGTCCAGGTCAAATATTTAATATTTACTGCTATGCCTTTTTAAAATTAATA AAATCTGTAAACTGACATCAGAAATGAAGCACCAGATCCAGGTGATTAACTGATTTTTGCTTGATTATCAAATATTTCAT ATTCTGATGTTTCACTTGTGATATTCAGGTTGGGAGAGGATCTCGTGGTGATGTCACTATCTTGCCAACATTGGTTATAA ATAATGTCCAATATAGAGGTTAGTTACTTAGAGTCTGTTTAGATAAGGACCAAAGAGCACTTATTGGAGCTTCTCTACTG GAAAAAATGCACAAGATAAGCTCCAATAAGTGCTCTTTGGTCCGCAACCAAATGGACGCTTAAATTTCTATTCAATAGAT ATTCTGTATGAATGCTCGCAAGTGTAAGAAGGAAAATTAGAGAGAATTTCTGTCCTGAAGATTTTGTTTGTTTTGTATGA AGGAAAATTGGAGAGAACTTCTGTCCTGAAGGCTGTATGTGCAGGATTTAAGGAGAGTACTGAACCTCCAGTTTGTTTAA GTGGAGGTAAGTGTGCTTAGTATTTCATTAAATGAACTGCACCGATGATACATTCTTTGAGTACTTAAAATCTTCTCTAA GAGTGGTATTCTGAACTTTACATACTGGTTTAACAGATATTGAGACTAATGAGTGCCTTGAAAGAAATGGAGGCTGCTGG CAAGACAAAAATGCTAGCATAAGTGCTTGCAAGGTATAGATAAGAAATTTCTAGCGCCACTTTTTCACCCAATTATAATT TCTATGTGGTTGGCTGCAAGCTAAACCATTATCTTTGCCAGGATACTTTCAGGGGAAGAGTTTGTGAGTGCCCTGTCGTG AATGGTGTTCAGTATAGAGGTGATGGTTATGCATCATGTGAAGGTATGCCTTTTCATATTTAACAAGTTTCCTCTTCCTT TTACTTTGGAGTATCAGAGTCTTATATACTCTATCTCATAAAACATGATAGCTATGGAATCCTGAGATTAAGATAACATT TATTTTATTATTGGTAATTCACCCTATATGCAACTTTCAGGTCAAAAGTTTAAGAAAATTCATTTCATATTGTAATATCA GTCCAAATAAAGAAGTTCTGATACTTTATTACAATGTGGATGGAGATTTGTTGCTGAGATGCTTACCCTTTTCCTTATTT GACAGCTTTTGGACCTGCAAGGTGTTCTCTAAACCATGGAGGTTGTTGGTCCGAAACTAGAGATAAATTAGCTTTCTCAG CTTGCTCAGTTCAGTACTACTTATCCAAATCTTCATTTTTTTTTTGGTTGGTAAAGATTTATGGTACCACTTTCCTGAAC ATGCCTCAAGGCTAACTGGATTATCTTGATTTCCCTTTTTGTATAAAGGAATCAGTGGTAAATGGCTGTAAGTGTCCAGT TGGGTTTCGCGGAGACGGTATTAATAAATGTGAAGGTAACATTTGTTTTCACTGTGGCAATTTCAAAATTTATTTCTCTT TTTCTATGATCAATGTTGGAAAAATATAACTCTATTCAAAACCTCTTTTGTTCTGATCCAGATGTTGATGAATGTAAGGA AAAAAGTGCATGTCAGTGTGATGGCTGCAGCTGCAAGAACACTTGGGGCGGTTACGATTGTAAGTGCAAAGGAGATCTTC TATACATAAAGGACCAAGATACTTGTATTGGTAAGATTTTAAGATCAAACTATGAAAGATTCTTGTTAGTGAGAAATAGT AAATAGCATCGCAGAAAATTAAGATCACAGTACATGATTAGAATTTTGCTTTCGATCTCGCAGAAAGAAGTGGATCGAAA TCTGGACGGTTTCTTGCCTTTGTGGTCATAGCAGTTGTTGTGGTGGCTGGTCTAGCTGGCTACATATTCTACAAATACAG GCTCAGGGTAAGCCTATTCATTCTCAACTACAAATTATGAACACACCATTTATGTTAAATTGGTATGTAATTACATTTTT CTTGTTTTTGTAGACTTACATGGACTCAGAGATCATGGCTATCATGTCGCAATACATGCCACTGGACCAGCAAAATAATG TAGTTCATGCTGAAGCTCAGCCTTTACGACAAGGCGAGGTATAAGGTATTCAATTATTCATCTCCTAAACTGCTTCTTTT GAGATTACTTTTCTGGAAAACAATCTTCTTATTTTGCTTCTATCTGCATTCTGCCAACAGAGATAG
CDS sequence (LotjaGi6g1v0245600.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTTCCCCTCTTCACCTTGCTCTTCTTCCTTCTGAGCTCAGTTCATGGCCGCTTTGTGGTGGAGAAGAACAGCAT CACCGTTCTGTCTCCCCACAAGCTCAGGGCCAAGCGTGATGGCGCCATAGGAAACTTTGGCCTTCCTAACTATGGAGGAT ACATCATAGGGTCACTTGTTTATCCAGACAAAGACTCTCATGGGTGCCACGAATTTGAGGGTGATAAGCCTTTCAAGTTT CGCTCTAATCGCCCTACGATTGTTCTCATTGATCGTGGAGAGTGTTACTTTGCCTTGAAGGTGTGGCATGCCCAACTAGC GGGAGCTGCAGCAGTTTTAGTGACTGATAGCATAGAGGAGTCCCTAATAACCATGGATTCTCCTGAGGAGAGCCTTGATG CTGACGGCTACATAGAGAAGATTGTGATTCCATCAGCTCTGATAGAGAAGTCCTTTGGTGATGCTTTGAAGGAAGCTTTA AACAACAAAGATGAAGTTTTGCTAAGAATAGACTGGAGAGAGTCAATGCCTCACCCTGATGACAGGGTTGAGTATGAGTT CTGGACTAACAGTAATGACGAATGTGGAGCTCGCTGCGATGAGCAGATGAATTTTGTGAAGAATTTCAAGGGTCATGCTC AGATTCTTGAGAGGGGTGGTTATACCTTATTTACTCCACACTATATTACTTGGTTTTGTCCAAGGCCTTTTGTTCAAAGC AGTCAGTGTAAGTCCCAATGTATAAACAATGGAAGATATTGTGCGCCGGATCCGGAGAAGGATTTTGGAGAGGGATATCA AGGGAAGGATGTGGTGTATGAGAATCTGAGGCAGCTTTGTGTCCATAGAGTTGCGAACGAGAGCAGCCGTTCGTGGGTCT GGTGGGATTATGTGACAGATTTCCATGTCCGGTGTTCTATGAAGGAGAAAAGATACAGCAAAGAATGTGCTGAAACTGTC ATGGAATCATTAGATCTTCCAATTGAGAAAATTAAGAAATGCATGGGTGACCCTGAAGCAGATGTTGAGAATGAAGTGTT AAAGAATGAGCAACAAGTCCAGGTTGGGAGAGGATCTCGTGGTGATGTCACTATCTTGCCAACATTGGTTATAAATAATG TCCAATATAGAGGAAAATTGGAGAGAACTTCTGTCCTGAAGGCTGTATGTGCAGGATTTAAGGAGAGTACTGAACCTCCA GTTTGTTTAAGTGGAGATATTGAGACTAATGAGTGCCTTGAAAGAAATGGAGGCTGCTGGCAAGACAAAAATGCTAGCAT AAGTGCTTGCAAGGATACTTTCAGGGGAAGAGTTTGTGAGTGCCCTGTCGTGAATGGTGTTCAGTATAGAGGTGATGGTT ATGCATCATGTGAAGCTTTTGGACCTGCAAGGTGTTCTCTAAACCATGGAGGTTGTTGGTCCGAAACTAGAGATAAATTA GCTTTCTCAGCTTGCTCAGAATCAGTGGTAAATGGCTGTAAGTGTCCAGTTGGGTTTCGCGGAGACGGTATTAATAAATG TGAAGATGTTGATGAATGTAAGGAAAAAAGTGCATGTCAGTGTGATGGCTGCAGCTGCAAGAACACTTGGGGCGGTTACG ATTGTAAGTGCAAAGGAGATCTTCTATACATAAAGGACCAAGATACTTGTATTGAAAGAAGTGGATCGAAATCTGGACGG TTTCTTGCCTTTGTGGTCATAGCAGTTGTTGTGGTGGCTGGTCTAGCTGGCTACATATTCTACAAATACAGGCTCAGGAC TTACATGGACTCAGAGATCATGGCTATCATGTCGCAATACATGCCACTGGACCAGCAAAATAATGTAGTTCATGCTGAAG CTCAGCCTTTACGACAAGGCGAGGTATAA
Protein sequence (LotjaGi6g1v0245600.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFPLFTLLFFLLSSVHGRFVVEKNSITVLSPHKLRAKRDGAIGNFGLPNYGGYIIGSLVYPDKDSHGCHEFEGDKPFKF RSNRPTIVLIDRGECYFALKVWHAQLAGAAAVLVTDSIEESLITMDSPEESLDADGYIEKIVIPSALIEKSFGDALKEAL NNKDEVLLRIDWRESMPHPDDRVEYEFWTNSNDECGARCDEQMNFVKNFKGHAQILERGGYTLFTPHYITWFCPRPFVQS SQCKSQCINNGRYCAPDPEKDFGEGYQGKDVVYENLRQLCVHRVANESSRSWVWWDYVTDFHVRCSMKEKRYSKECAETV MESLDLPIEKIKKCMGDPEADVENEVLKNEQQVQVGRGSRGDVTILPTLVINNVQYRGKLERTSVLKAVCAGFKESTEPP VCLSGDIETNECLERNGGCWQDKNASISACKDTFRGRVCECPVVNGVQYRGDGYASCEAFGPARCSLNHGGCWSETRDKL AFSACSESVVNGCKCPVGFRGDGINKCEDVDECKEKSACQCDGCSCKNTWGGYDCKCKGDLLYIKDQDTCIERSGSKSGR FLAFVVIAVVVVAGLAGYIFYKYRLRTYMDSEIMAIMSQYMPLDQQNNVVHAEAQPLRQGEV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 1 | 18 | 18 | - | – | |
| SignalP_EUK | 1 | 18 | 18 | - | – | |
| Phobius | 2 | 13 | 12 | - | – | |
| Phobius | 14 | 18 | 5 | - | – | |
| Gene3D | 17 | 179 | 163 | 4.4E-47 | – | |
| Phobius | 19 | 560 | 542 | - | – | |
| PANTHER | 23 | 609 | 587 | 4.0E-235 | – | |
| PANTHER | 23 | 609 | 587 | 4.0E-235 | – | |
| Pfam | 57 | 156 | 100 | 1.5E-11 | ||
| SUPERFAMILY | 86 | 166 | 81 | 9.02E-8 | – | |
| Gene3D | 456 | 551 | 96 | 2.9E-6 | – | |
| SMART | 509 | 551 | 43 | 0.0013 | ||
| CDD | 509 | 538 | 30 | 5.65228E-5 | – | |
| ProSitePatterns | 509 | 535 | 27 | - | ||
| TMHMM | 559 | 581 | 23 | - | – | |
| Phobius | 561 | 581 | 21 | - | – | |
| Phobius | 582 | 622 | 41 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). |
Expression pattern of LotjaGi6g1v0245600.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…