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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0247700 |
| Transcript ID | LotjaGi6g1v0247700.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sucrose nonfermenting 4-like protein; TAIR: AT1G09020.1 sucrose nonfermenting-like protein; Swiss-Prot: sp|Q944A6|SNF4_ARATH Sucrose nonfermenting 4-like protein; TrEMBL-Plants: tr|I1MGR7|I1MGR7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0247700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:55979229..55986334) extracted from Lotus japonicus Gifu genome v1.2.
GAAATTGCAGAAGCACACGTGCAGTTCCAATGTGATGATGCCTTTTACCGTTTAACCGCCGGTTTTTATTATTTTTGTGC TTTAGCAATTTCCACCTTCATCATCACAATAATAATTCATCAACCCTATTCAAAGTTCCAACCTTTTTCTATTTCTTCAA TTTCCCCTTTTTGTTTCCCCCTTTCTGTGATAAATCTCTCGGTTTTCTCCTCTGAATTTTCTCATGTTTCCATAGGGTTT CGCTCTGAAACTCTCCCTGCTTTCGTTTTCCCAGATTCCATTTCCAAACTCGTGCCTCTTCCTGGTTGAATTTGGTAAGG TTTCTCTTAATTTTAGGGTTAGGGTTTTGTGTGTGCGAGTTTAATTGGGAGTGTTTTTTTCCATATTCGCTTCACTTTTT TGCTTATTCTGTTCCAGAGAGTAATGGGCACTTTCTGTTTTTGATTTTTCGGTTGAATAAAGCATAAAAATATGATTTTT GTTATTTTCGTTTCACAGAGCATTGAATTGTTGCGGCATTTACACGAATTTGCAACCCTGCCAACTGAGCTAGCTGACAT GCTGGGATGAAGTGTGGTGCTTGGAAGGTGTTATCAGAGTAGCACTCTTAATTTGAGGTTGGATGTTCAGTCAGAGCATG GATCCTGCAAGGGGTGCTAGTGGTGTTGGAGGGACTGTGTTAATTCCCATGCGGTTCGTGTGGCCGTACGGTGGAAGGAG TGTATTTCTTACTGGTTCTTTCACAGGGTGTGTATTTTGTTGATTGCTATACATGGATATGTTAATTTTTGTTTGCTAAA ATGCTCTAGTTTTAGGCTTGTTTATGTCTGTTTGTTTCCTTTTTTGCTCGTCTATTTGATGTAAAATTTTTCTTTAAGGT GGTCTGAACCTCTACCAATGTCGCCAGTCGAAGGTTGCCCAACTGTGTTTCAAGTTATTTATAGCTTGCCTCCTGGTTAC CATCAGGTCAGTTTATGATTGTGTTATACTGTGTTTTATTGTTGGATGGTGATTGAGTAGACCTGTAGAAGTTTCATTGT GTTTCTACGTTTATATCTATGTTTGTTGGTTTGGGATAAGATAATTTCCATTGACAATTTTTGAGAGAGATATTTGAGTA GAAAGGCATTCATTAATTGTTTGGCTTCTGAGGGTAGTAGCCGACTAGCTCTATATTTCTGGTAAATAGTAACAAATATG GAATTCATGGTTTAATAGGAAAGTGTAATGGTTTGAGGTTATTTAATAGGTTTTAGCATTTTCTTAATTTTGAAGTGTTA TTTTGTTTTCTCAATGGTGATTGTTATCTGAGCTTGAGCAGTAGTATACTGCGTATGTTTGAGGTTGCAAGTATCTGATT ATGATGTGCTAAGGTGGAATCTAAAAAAATATGCTTTTGAGAAAATTTGGCCTTTATTCTTGTTGTCTGGGTACATAATT ACTTACTTTGAAGTTGCTTGAATGCAGTACAAGTTTTTTGTTGATGGAGAGTGGCGGCATGATGAGCATCAACCTTGTGT ACCTGGAGATTATGGGATAGTCAACACTGTCTTATTGGCTACTGATCCTAACTACATACCTGTTATAACTACAGATGCAG CGTCTGAAAATAACATGGATGTGGATAATGAGGCTTTTCGCCGTATGGTAAGATATGGCTGCTCTATGTGTGCTGCTCTT GCCTAGGTTGTACTTTTGAATGATATTTTCAATGAAAATGTTGATACAGGGATCTTCTCGAGTCTGGAGAATTTTTCTAG CTCATCTTAGAACTCCTAAACCCATCTATTTATTATGGCCTCTGAATCCTGCAATATTTATCCCAGTGTTATCAAATAGT TTGGCTAATCGCGATGCCGCTATTGCCCGCTATTCGCCGCTAAATAGCTGCCGAAATAGCGGATTTTTGGCTCACCGCGA TCGCGATTTGACAACACTGATTTATCCATGTAGGTTTGTTGAGTCTTATATTTGGAATCAAAATAAATATAACCTTCCTG ATTGTCTTATTTGTCATAAGTGATACCCTGGTGGCTTACAATGTCTTGTTTCACATGCTTGTTCTGTTGCACTTTTTAAT ATGATGTCTGCTCATGTATAAAATGGCATCTTGTATATTTGATCCTTAAATTTAATTGTTCCAACATTAAATATAATATG TTGCTTGCTTTATAGCAAATCCGGTTGACAGATGGTACATTGAGTGAGGTGCTGCCAAGAATATCAGATGCTGATGTACA GATCTCCCGTCAACGTATTTCTGCATTTCTATCGATGCACACAGCTTATGAATTACTTCCTGAGTCAGGCAAGGTACTAA TGACCCTGACCCTTTATTTTGTTCTTTGTGAGTTTCTGTCATGAAATCGACAAAACATGAATTACAAAATTAATTTAGTG ACTCCTGGGCACAGGTTGTTGCCTTGGACGTTGATTTGCCAGTGAAACAAGCATTTCATATACTGCATGAGCAGGTACGG TGTTTTTTTTTCTGGTAGACTAAACTTTGCACAACTTTTTTCTCTCCATATATTGAATAATGTTTCTAAAATATGTATGA TTACTGTCACATCTATCGTGTTATAGTTTTAAGACTTTCTCTTCATTTATCGTATTATAGTTTTCTCAGTTTTAGTGTTG TTGCATCTTCATCCACTGCAGATTAAAGGTTTGCATATGCAGTTTTTCTGATCTGGATAATTTACAGGGAATTTACATAG CTCCTCTCTGGGACTTCAGCAAGGGGCAATTTGTTGGTGTTCTTAGTGCTGTGGATTTTGTCTTAATTTTAAGAGAGGTA TGTGTCTTATATTAACAGTTTTGCTTCAATCTTATACAGAACTGCCTGTAAAGTTCAAGTGTTCACACACACACACACAC ACAGATATATATATATATATATATCTGTTATATATATATCTGTATGTATGTATTTATATATATATTACTTTGCCGTGCTT GTTGAAACTTATTATCGCCCTATTCTCAGCTGGGGAATCATGGATCCAATCTGACAGAAGAGGAACTTGAAACACATACC ATATCAGCTTGGAAAGAAGGAAAGTCATATCTAAACAGACAGAACAACAGACATGGAATTGCATTATCAAGACTTTTTAT CCATGTAAGTGTTTTGTATGTGACATACTAACAATGTTTATCCATTCATGTGGTTCTGTATGTCTTTAGAATGCGATAAG GCTTGTATTTTTCACTACTTGCAGATTACGGTGTGTAATATATGTGTGCATGCGCGAGAGTGTGTGTGCGTGTGTGTTTA TAAAGATGCTTAATGAGCATGTTTAGTTAATTATAGATCCACAATTTTGTAAAATTCTCCCTCTCCCTGGGTACGTGTAG AATGGTGTTTGCAACAAGCGTAAATTCACTAAGCTGTTAGGGTGACTTAGGGAACACATGGCTTATGCAAAGGGGAGGAA ATTTTGTTCTCTATAATTGTGATGATACCATGATCCTAACTGAGTATATATTAGCAACATATCAAGCATTGGCTTGTATA AATGTTTTATCAATCATTTTCAAGTATTACTATTATTATTTAATACCCATCCCATTTACCATGCTCTCATTTCAGGCCGA GAAGAAATTGTGATGTGTCCGAGTAATCTTCCTTAAAATCTATCTTGGTCTTGGCTTGTATAAATGTTTTATCAATCATT TCATGATTGAATGAGTTTAACCTAAGAATGCTTAAGTGAAACAATTTTGGGTCCTGCTTCTTTGTTTATGCCATAGTTAT CGATAGTGCGCAACAGCGGCACTTTAGCGCTGTCTCGTAGTGTAGCTGACCCCTGCCGCGACGGGATTGCGGCTGTGAAA TCCTGCTATTCGCAGTCAATAGCGGCCTTCCCTTTATGGGATTTCATTTTTGGGGGTCATCCGCGACAGGCTGCGATCCG CGATTGACTACTATTAATGCTTTAATATAAATGTGTCTCTCTATTGCACTAACTGCACTATTAGTTCACTTGCTATGTTT GACTTTTTGGATATTTGTTTATGATGCAGGCAGGGCCATATGATAACCTGAAAGATATTGCCATGAAGATCTTGCAAAAG GAGGTTTCAACAGTTCCTATTATGCATTCGTCTTCTGAAGATGGTTCATACCCACAGTTACTGCATCTTGCTTCACTTTC AGGAATACTTAAATGTAAGATTTTATGATATTTTCTTTATATTGTTATTAAATGTTCTTTAATCTTACCAAATTGATTTT TCAGGCATTTGTAGGTATTTTAGGCACTGCTCTAGTTCATTGCCTATACTTCAATTTCCAATCTGTGCAATACCTGTGGG AACGTGGGTACCTAAAATCGGGGAATCAAGTCGGCGGCCCTTAGCAATGTTGAGACCAAGCTCTTCTCTTGCTGCAGCCC TAAATTTATTAGTTCAAGGTGTGAACTTTTTGTCTGACCTTGAACATAGTGTATCAAAAAGAAAAGCAACAGAGAGAAAG AATGCAGAAATTGGTATCCTATTTTACTTCTGAGGTATTAGGCTGATGATAGAGGGCTCTGTCTCCGACTTTGAGAAGAA TGTTGCTTTGTGATTAATTATTGAAAGAGAGCTTAAATTTATGGGGTGATTCGTTTTGTTTGTTTCAAGCATCAAAATAT AAAATATGTTTTTGCTTTTAATATGACTATAATTATACTTAAATTAGTTCTTGCCCTTTGTTTTGCAGCCGAAGTTAGTT CAATACCAATAGTTGATGATAATGACTCATTACTGGATATATATTGTCGGAGGTATGTTATTTCCTACTATATCCTCAGT ATTAGACTTCATAGTGCCTTGTTTGAAGTACTATAAAGCCAATCTATGGTTCAAGTATTTCATTCTTTGCAGTGGCTTCT AAAAGCTTCTAATTTTCCCTCCCCGCCCTTCTTTATTTGTAGTGACATAACGGCTTTGGCAAAGGACAGAGCATATTCTC ACATCAATCTTGATGAGATGACTGTTCATGAGGTAAGTTTGTTTTTCATTTTTGCATACCAATTAACTTATGAAGAATTA TATTTTGAAAATTAAAATACATGTGTTCTGATTTCATCTTTTGCTTATTAATCCAGATAAGCAATTTCCTTTGTTGTTGA AGTACCTCAGTCTTGTATGGCAAATGATATTTGCACAGCTGCACATAGCTTTTGTTGTTGTTGTTGTAGCATAGCTGCAC AAGGGGTCAATATGTTTGTGTTTTGTGAACTTTTTGCATTTTTGTTGTCTTGATTGATCTTTATTATTATTATTTTTTTG GGGGGGGGGGGGTGAGGAAGGAAGATTTCAATTTAAATTGCAATGTTACTGTTAGTGCCATTTTCAGTCTGTAGTCTAAG GCAAGGTTACAGAAATATTCATGAGGTCCATTTTTTATTTGGTGATTTTCTTCTTGGGATCTCAGTATCTCCTTGCATGC TTTATTGTCCAGGCTTTGCAGTTGGGCCAGGACGCATATAGTCCGTATGAACTCAGAAGTCAAAGATGTCAGATGTGCTT ACGCTCTGATTCGCTGCAAAAAGTCATGGAACGGTTGGCAAATCCAGGTGAGCTTGTTTTGTCCCCCTCCCTCCTCTTTT TCAGACGACGCATGCCATGCGGTTTCATAATTGTTTTAACTGTCTGATGGGGTGACATTCAAGGTTGCTTAATGTTAGTT TTCGTTCCGTGGGGTTGTCTTCCTGAGTTAGCCTTCAGTTCTTGTCAACATTCATTTGGATCTTTCTGTATTTTGTAGTT TGTACCCACAAGTTTTAATTGAATAGGGAGGGTGTATAATTATTTTCAGATATCCATTGACTTCATTTTGAAGATTGTGA TGCTGGAATTTTTGTGATCTCTAATACAGTAATACTTGATTGACTCAGGTGTGAGGCGGCTTGTTATTGTGGAAGCTGGC AGCAAGCGTGTAGAAGGCATTGTTTCATTGAGTGACATATTCAAGTTCTTTCTTGGTTAGTTTGGATTGATGAATGAAGA AGTAAAATGGTATGTGCAGTAAAATAGTCATATATTCTGGCCACACCAGCTATTTAAATGGTGATTAATCTCATTTTATT GTAATACAATTGGATTGGCCTCTTTTGCCTCATTTTAAGATTTTAGGCTAGAGAGAGAGGCCTGTAAATTCAGACTATTT GATTTTATTCATCTCTCCCCATTCGTAGTATCATCTTCAAATGTATTGTGCTACTGATATAGATGCCAGCAAGGTGGGGA GTACATGATCTGTAACCATTCCATGCTGTTTGTTAAGATACAACAGAATTTGAGAAGAAAAAAATTACAGATAGGATGAA GATTGAGAAGCTTTGTTTATTAATAATCCTTGTTTAATTGTTGTCTTAGCCTAATGTTTGAAATAAAACCCACCTAGCTC ATTGTGAGTGTGGTGAATTGCTGATAAAACAGTGTATGTTTAAAGAGTCAACTTTAAATAATGCAATAGAGAAAGTGGTG GAGAACTAGAAACAAAGTTAAAGTATCATATGTTGAGAAAATATGATAAATTATCACTAAGATGGTTTCATCAATGCATG AAAAACATCAAATGAGTTTTAGTAAGAAAATTTTAGTATATAGAATCAAAATAGAAGCCAATCAAACAAGTGAAAATTAG AAGATTAAAGAAGAGTTTGAGAGGGGCATTTGAAAATAGTTTAATCAAAATAATCGCTTATGAAGTTACAATTTTGTTTG AGGTCTATGAAATGAAATTATAATTTTTGACGGGATGTTAATTTGATCAATGCAATCCATTTGCGTAATAAAACAAACTT ACTCGAATATCAAATATCAGGTAAATAAAAAAGTTGAGTATACATTAATAAGCCAATATATTTGCCTCATAACTTCCCAA CAAAGCAAAGTTAAGATCACTTTAGAGCATCTTAAAAACTCATATTGAAGAGCAAAACTCAATACTCAAGAAATCGCATG AAATAGGGAATCAATTTTTTGTCGGTCGTTACTTGTTCTCGCTTACTTGATAGCTAGATCACCTTCTTTCATAATCAACG TGACATTTTTAGAGTAATGACATACGCAGATTCTAAGAATTTCATTCATACAATCGAAAAACGCCG
CDS sequence (LotjaGi6g1v0247700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCAGTCAGAGCATGGATCCTGCAAGGGGTGCTAGTGGTGTTGGAGGGACTGTGTTAATTCCCATGCGGTTCGTGTG GCCGTACGGTGGAAGGAGTGTATTTCTTACTGGTTCTTTCACAGGGTGGTCTGAACCTCTACCAATGTCGCCAGTCGAAG GTTGCCCAACTGTGTTTCAAGTTATTTATAGCTTGCCTCCTGGTTACCATCAGTACAAGTTTTTTGTTGATGGAGAGTGG CGGCATGATGAGCATCAACCTTGTGTACCTGGAGATTATGGGATAGTCAACACTGTCTTATTGGCTACTGATCCTAACTA CATACCTGTTATAACTACAGATGCAGCGTCTGAAAATAACATGGATGTGGATAATGAGGCTTTTCGCCGTATGCAAATCC GGTTGACAGATGGTACATTGAGTGAGGTGCTGCCAAGAATATCAGATGCTGATGTACAGATCTCCCGTCAACGTATTTCT GCATTTCTATCGATGCACACAGCTTATGAATTACTTCCTGAGTCAGGCAAGGTTGTTGCCTTGGACGTTGATTTGCCAGT GAAACAAGCATTTCATATACTGCATGAGCAGGGAATTTACATAGCTCCTCTCTGGGACTTCAGCAAGGGGCAATTTGTTG GTGTTCTTAGTGCTGTGGATTTTGTCTTAATTTTAAGAGAGCTGGGGAATCATGGATCCAATCTGACAGAAGAGGAACTT GAAACACATACCATATCAGCTTGGAAAGAAGGAAAGTCATATCTAAACAGACAGAACAACAGACATGGAATTGCATTATC AAGACTTTTTATCCATGCAGGGCCATATGATAACCTGAAAGATATTGCCATGAAGATCTTGCAAAAGGAGGTTTCAACAG TTCCTATTATGCATTCGTCTTCTGAAGATGGTTCATACCCACAGTTACTGCATCTTGCTTCACTTTCAGGAATACTTAAA TGCATTTGTAGGTATTTTAGGCACTGCTCTAGTTCATTGCCTATACTTCAATTTCCAATCTGTGCAATACCTGTGGGAAC GTGGGTACCTAAAATCGGGGAATCAAGTCGGCGGCCCTTAGCAATGTTGAGACCAAGCTCTTCTCTTGCTGCAGCCCTAA ATTTATTAGTTCAAGCCGAAGTTAGTTCAATACCAATAGTTGATGATAATGACTCATTACTGGATATATATTGTCGGAGT GACATAACGGCTTTGGCAAAGGACAGAGCATATTCTCACATCAATCTTGATGAGATGACTGTTCATGAGGCTTTGCAGTT GGGCCAGGACGCATATAGTCCGTATGAACTCAGAAGTCAAAGATGTCAGATGTGCTTACGCTCTGATTCGCTGCAAAAAG TCATGGAACGGTTGGCAAATCCAGGTGTGAGGCGGCTTGTTATTGTGGAAGCTGGCAGCAAGCGTGTAGAAGGCATTGTT TCATTGAGTGACATATTCAAGTTCTTTCTTGGTTAG
Protein sequence (LotjaGi6g1v0247700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFSQSMDPARGASGVGGTVLIPMRFVWPYGGRSVFLTGSFTGWSEPLPMSPVEGCPTVFQVIYSLPPGYHQYKFFVDGEW RHDEHQPCVPGDYGIVNTVLLATDPNYIPVITTDAASENNMDVDNEAFRRMQIRLTDGTLSEVLPRISDADVQISRQRIS AFLSMHTAYELLPESGKVVALDVDLPVKQAFHILHEQGIYIAPLWDFSKGQFVGVLSAVDFVLILRELGNHGSNLTEEEL ETHTISAWKEGKSYLNRQNNRHGIALSRLFIHAGPYDNLKDIAMKILQKEVSTVPIMHSSSEDGSYPQLLHLASLSGILK CICRYFRHCSSSLPILQFPICAIPVGTWVPKIGESSRRPLAMLRPSSSLAAALNLLVQAEVSSIPIVDDNDSLLDIYCRS DITALAKDRAYSHINLDEMTVHEALQLGQDAYSPYELRSQRCQMCLRSDSLQKVMERLANPGVRRLVIVEAGSKRVEGIV SLSDIFKFFLG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 18 | 101 | 84 | 4.5E-24 | ||
| Pfam | 21 | 103 | 83 | 4.4E-26 | ||
| SUPERFAMILY | 21 | 102 | 82 | 1.76E-24 | ||
| CDD | 22 | 100 | 79 | 1.68522E-31 | – | |
| PANTHER | 32 | 491 | 460 | 4.4E-249 | – | |
| PANTHER | 32 | 491 | 460 | 4.4E-249 | – | |
| Gene3D | 148 | 332 | 185 | 9.5E-47 | – | |
| SUPERFAMILY | 158 | 328 | 171 | 1.29E-25 | – | |
| CDD | 167 | 316 | 150 | 8.63854E-42 | – | |
| ProSiteProfiles | 171 | 233 | 63 | 9.727 | ||
| SMART | 177 | 226 | 50 | 0.08 | ||
| Gene3D | 349 | 491 | 143 | 3.4E-36 | – | |
| ProSiteProfiles | 355 | 418 | 64 | 9.609 | ||
| SUPERFAMILY | 356 | 490 | 135 | 3.78E-21 | – | |
| Pfam | 357 | 403 | 47 | 7.2E-6 | ||
| CDD | 358 | 490 | 133 | 2.69909E-43 | – | |
| SMART | 359 | 407 | 49 | 6.7E-5 | ||
| ProSiteProfiles | 437 | 491 | 55 | 8.816 | ||
| SMART | 441 | 490 | 50 | 0.012 | ||
| Pfam | 444 | 490 | 47 | 8.9E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0247700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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