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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0248900 |
Transcript ID | LotjaGi6g1v0248900.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Vesicle-associated membrane protein; TAIR: AT4G15780.1 vesicle-associated membrane protein 724; Swiss-Prot: sp|O23429|VA724_ARATH Vesicle-associated membrane protein 724; TrEMBL-Plants: tr|I3SDA5|I3SDA5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0248900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:56112399..56114428) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGTCAGGAATCGTTCATATACAGCTTCGTGGCTCGTGGGACGATGGTGCTAGCTGAGTACACCGAGTTCACTGGGAA CTTCCCTGCCATTGCAGCTCAGTGTCTCCAGAAACTAACCTCTTCCAACAACAAGTTCACCTACAACTGTGACCACCACA CCTTCAATTTCTTGGTGGAAGATGGTTATGGTAATGCTTCAGCCTTCTGATCTCTTGTTACTTTCTCTTGTTTTTGGTAT TCTCTGCATTTCTATGATGATGTGTTATGTCTGAACAGATATTGAAGTGGAATTTGAATTGGTAGTTTCTAAGTGCTGGA TCTAATCTTGCAACTGGTTTTTTACTTTATGGGGGATTTGTGTGAGCTTAAAGTTTTGGTCTTTTGGGTTCATTTGTCAT TTGAATTAGTGGGTTTTGCTTAGAGAAACAAAATTTGGGTTCTTGTTGAGGTCTAATTAAGGTTTTGTTACTCAAGTTGT AAGAGTCATAGAAGGGTAAAGGTCCTTTATTGTGTTGCATGTCCTCTGATATTAGACAGTTGCTTTTCCCTGGTTATATT TTGTTTACATGCCTCATTTCAATGACAGCTAGCTTGTGTCCTTGTCCATCACTGATGAGGGGTGTTGGTAGGATATCTGA TCATTTTGTCAATAGTTTAGAGATTGTAATGCCATAGATATGTTAAGAAGTTGTGTATGAGTTCTGTAGTTGTGTTTAGC CTTCGATAGAAATGGATAGTCAATGGGTTTTGGGTTTTTGGGACTTGAGACACTGCAACTTTGAATTCCAATAATATCGA AATTATTGTTAGTCTTGCTGAATTTAAATGAATACAAAGATCAATGTAGAGACTAATTCCAACATGTTAAGATTTAGATA TTGTAAAGTAATTGTGTACCTGGTGCGTGTCATTGAGGGATCTATAGTCGTCTTCTCTGTTTTCACAGTGGAAGCATGAA TGTAAGAGAACAAACAATGCAACCTACTGTGTGTGTGTGTGTGTGGAGTGTATTAGGTGAGAGTATGTTCTCACTAGAGG AACTCATCTTGACCATACAACTATAAATTGATGGTCAAGATTAATGTCTATTGCCTCTCACTACATATGCCTCTTGCCTG TGTGTGTTTGTGTAAATATGTAAAGATATTTGACTTCTGGTAGTTTTGCAAACTTATTCTTAATGCATGTTTATAAACTT ATTACAAAATTGCTCAGTGGAAATCGTGTATGACATAAGCAATATAGAATAGCTTTTAGGCTGTACACACTAGTTTGTAG ACGGAAAATGCTGAAGCAAACAAACTGATAGATTGGAAACATTGAATTGCAGCATAATTGATGTTTTAATGCTTTGCATT TGGGCTTTGTGTAAATTGCAGCTTACTGTGTTGTTGCGAAGGAATCTGTTAGCAAGCAAATCTCTATTGCTTTCCTTGAA CGGGTCAAAGCTGACTTTAAGAAAAGATATGGTGGTGGAAAAGCTGATACAGCTGTTGCCAAAAGTCTGAACAAGGAGTT TGGGTAATATTCATTTTGTTCTGGGCATGGTGTTGATACCTCAATCCTTGGATAGACATGTATAGAAAGTTTGATAATAT TGATGACAATTGCAGACCAGTTATGAAAGAGCACATGAAATATATCATTGATCATGCTGAAGAGATCGAAAAGCTGATAA AAGTGAAGGCTCAAGTTTCAGAAGTTAAAAGTATCATGTTAGAGAATATAGACAAGGTACTGAATTGCTTAGGAGTAAGA ATTGGAATTTTGTATTAAAAAAAATTCCTTGCATTGTACTCTTTTTTGTATGTGTTACTATACTCTTCTCAGTTGCGTTG TTTGAAGCATTATTTAAGCTGGATGAATTGATTGCAATATTATGTATACTTTGTCACCTTATTTTTGTTATGTGTGTTTT CACTTCAGGCTATTGACAGGGGAGAAAATATGACTATTCTAGCAGACAAGACAGAGACATTGCGCTCACAGGTAGGCTGT GACTAAGGTTATACAAGTTTTTGTTTTTAA
CDS sequence (LotjaGi6g1v0248900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTCAGGAATCGTTCATATACAGCTTCGTGGCTCGTGGGACGATGGTGCTAGCTGAGTACACCGAGTTCACTGGGAA CTTCCCTGCCATTGCAGCTCAGTGTCTCCAGAAACTAACCTCTTCCAACAACAAGTTCACCTACAACTGTGACCACCACA CCTTCAATTTCTTGGTGGAAGATGGTTATGCTTACTGTGTTGTTGCGAAGGAATCTGTTAGCAAGCAAATCTCTATTGCT TTCCTTGAACGGGTCAAAGCTGACTTTAAGAAAAGATATGGTGGTGGAAAAGCTGATACAGCTGTTGCCAAAAGTCTGAA CAAGGAGTTTGGACCAGTTATGAAAGAGCACATGAAATATATCATTGATCATGCTGAAGAGATCGAAAAGCTGATAAAAG TGAAGGCTCAAGTTTCAGAAGTTAAAAGTATCATGTTAGAGAATATAGACAAGGCTATTGACAGGGGAGAAAATATGACT ATTCTAGCAGACAAGACAGAGACATTGCGCTCACAGGTAGGCTGTGACTAA
Protein sequence (LotjaGi6g1v0248900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSQESFIYSFVARGTMVLAEYTEFTGNFPAIAAQCLQKLTSSNNKFTYNCDHHTFNFLVEDGYAYCVVAKESVSKQISIA FLERVKADFKKRYGGGKADTAVAKSLNKEFGPVMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAIDRGENMT ILADKTETLRSQVGCD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 172 | 172 | 4.9E-105 | – | |
PANTHER | 1 | 172 | 172 | 4.9E-105 | – | |
Gene3D | 1 | 129 | 129 | 7.2E-44 | – | |
SUPERFAMILY | 6 | 121 | 116 | 1.4E-28 | ||
CDD | 7 | 120 | 114 | 2.44535E-28 | – | |
ProSiteProfiles | 10 | 114 | 105 | 26.553 | ||
SMART | 31 | 113 | 83 | 2.6E-24 | ||
Pfam | 32 | 111 | 80 | 3.1E-20 | ||
SUPERFAMILY | 126 | 172 | 47 | 5.08E-12 | – | |
CDD | 129 | 172 | 44 | 8.02507E-14 | – | |
Pfam | 129 | 172 | 44 | 1.4E-10 | ||
ProSiteProfiles | 130 | 176 | 47 | 12.978 | ||
Gene3D | 130 | 174 | 45 | 3.0E-12 | – | |
PRINTS | 135 | 154 | 20 | 1.2E-7 | ||
ProSitePatterns | 148 | 167 | 20 | - | ||
PRINTS | 155 | 174 | 20 | 1.2E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi6g1v0248900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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