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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0266700 |
| Transcript ID | LotjaGi6g1v0266700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FAD-binding berberine family protein; TAIR: AT1G30700.1 FAD-binding Berberine family protein; Swiss-Prot: sp|Q9SA85|BBE8_ARATH Berberine bridge enzyme-like 8; TrEMBL-Plants: tr|I3S2I4|I3S2I4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0266700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:58050700..58056926) extracted from Lotus japonicus Gifu genome v1.2.
ATAAATTCCAACTCAGATCATGCCAACAAAACTCACTAAAAATCATATGTTCTTTGCTCCTAATCATTCTCATTAAGATA AACCAAAATGGGAGCTCTTTCTCCTAATAAAATACAACTATCACTATTCCCCATTGTTGTGTTGCTTTCTCTTATCTCCT TGTCAAATTCAGCTCCCCACACCAAAACTTTCCTTCATTGCCTTGAAAGCCATTCAGAGCCCTCACACCCTATAACATCT GCAATTTTCACACCAAGCAATTCCTCATTCTCTTCAGTCCTGCAAGCCTACATCAGAAACCTTCGTTTCAACACCTCCAC AACAAGAAAACCATACCTCATAATAACAGCACTGCATGTATCTCATGTACAAGCAGCTGTTATTTGTGGCCAAAAGCACA ATTTGCAGATGAAAATCAGAAGCGGCGGTCATGACTACGAGGGCGTGTCGTATGTCGCGGATGTGCCATTCTTCATCCTT GACATGTTCAACCTTAGATCCATTGAGGTTGACATAGCCTCAGAAACAGCTTGGGTCCAAGCTGGTGCAACACTTGGTGA ACTTTATTACAGAATTGCTGAGAAGAGTAAAAAACATGGCTTCCCAGCTGGGGTTTGTCACACAGTTGGGATTGGAGGAC ACATTAGTGGTGGTGGATATGGCAACATGATGAGAAAATATGGTCTCTCGGTTGATAATCTTCTTGATGCACAAATCATT GATGTTCAAGGTAGATTGCTGGATAGAAAATCCATGGGTGAAGATCTCTTTTGGGCTATTAGTGGTGGTGGTGGAGCTAG CTTTGGTGTGGTTCTTTCCTACAAAATCAAGCTAGTTCAAGTTCCTGAGACAGTCACTGTTTTCCAAGTACAGAGGACTC TGGAGCAAAATGCAACAGACATTGTTTACAATTGGCAGCATGTTGCACCAAACACAAGCAATGATCTTTTCATTAGGGTC GTCATTGACGTGGTAAACGGTACAAAACAAGGAACAAAGACTGTGAGAGCAACCTTCATAGCTTTGTACCTTGGTGACTC AAAAAGTCTTCTTTCTCTCATGAATGAAACATTTCCTCAATTAGCTTTAAAACAATCTGATTGCATTGAAACAACATGGC TTCGTTCGATTCTGTTTTGGGACACCATAAACATTACCAACCCAGTTGATATTTTGCTTGAAAGACAACCTCTGTCCATC AAATACTTGAAAAGGAAATCAGATTATGTGAAGAAACCAATTTCCAAGGAGGGTTTGGAAGGGATTTGGAACAAGATGAT TGAGTTGGTGGATGCAATTCTTTACTTCAATCCTTATGGTGGAAGAATGGCTGAGATTCCATCAACAGCTTCTCCTTTCC CTCACCGTGCTCGGAATTTATGGAAGATTCAGTACCAAGCAAATTGGATGCAGTCAGGGAAAGAGGTTGCTGATCACTAC ATAAACTTGACAAGAAAACTTCATGATTACATGACTCCTTTTGTTTCAATGAACCCAAGAGAGGCTTTTTACAATTACAA GGACCTTGATTTGGGAATCCACCACAAGGGTAAGAAAAGTTATTCTAAAGGTAGAGTTTATGGAGTGGAGTATTTCAAAG ACAACTTTGACAGGTTGGTTCAGGTAAAGAGCAAGGTTGATCCTGGCAATTTCTTTAGGAATGAGCAGAGTATCCCCACT CTGCCACATAGGAAGAATTAGAATGTTAGATTAATAATGGTGACTTAAAAATATTGTTTATTTCTAGTTTGTTAGTGATA AATTTGAATGATTGTGGAAATAAAGGTGGGGGTTTAAAGGGCAGTTATGATTATTCCAGCAAAATAGAATTAAAGTTTGC TGATTTGTTTGGTTTGATAGGGAATGAAATGAAACTGTAAACTGTTATTTTATTCCTTCCACATCAAGACTATCAGGCAA GGCTTGAATAGTTTTGATTACTTGATAATATATATTTTTTTTTTGCAAGAAAATTACTTGATAATAGTTTTTTTTTTGAA AGTCTTGATAATAGTTATAACAATAACTAATATATTGATTTAATATTTTGTTATTGATAAGTTACTTTAAAATTTATTAT TATAATAATTTATAGTTTTTTATTATAAAATATTTATAAGTTAATGACAAGAGGAAATAATTTTCAATGATGCTTCAATT GTTCACTGTTTTTTTTTAAAAGTCAATTGTTCATTGTTAAACTTCCCATACATGTAACTAAAATATAGTCAAATTACATT GGATTTTTTATTAATAATTTTTTTTTACAACAGAAGCAAACATATTATTGAAAAAAGAGTTTTATGAGAACAAACCTCTC ATAAATAAGAAAATAAGCACAATTCAGAAAAATCCACCACCCCTTCCATGGCCAAAAAATAATAGTAGTAGTTAATTGTT AATAGTTCTTTAAATTAATTATTGAAAATATTCTCATACACATAATTAAAATAATAAATTTCAATCAAATGAAAAAATAA AAATAGAAATAAGAAATGGTGTGTGTGTATATATATATATATATTTATATTTATTGAGAGGGAGTAGAAAAATAGTATAT TATGTTCACAATTTTGGTCAATTAAAAATAAAGTAGTATTAAAATTTAAAAATTAGTTGTTTCAAAAAAAATTTAAAATT TAATAATGTAAAGCATCTTTAAGTAAATTTATTTCCTCAACTTGAGTGACAATTATATATATATATATATATTACAGTCA TATAATATAGTAAAATATATTTTAATAATATTTTACACTTTTACTATTTAATATATTTTTTAATATTAATATTTAAAATA ATAATAATTTAATGTTTTACAGCAAAAAAAAAAAGAAACTTTATTGAATGAAAAAGCTACACATGAGAATAACATTTTCA TGAAATAGGGGAACACCAATACAAAACCAATCAAACATACAATCAATTTCCCTCCCATTGGATGGATAATCGTAGAGATT GTCCCTAATTAAAACCTCACTAAGAAAAACCATTTGAGATAAATAGTAATAATTTATAACTTCGATAATTTATAGCTTTA AAAGGTAACAGTGACAGAAATGCTAAGATGTCGGCTGAGACTAAGATTATATTTGACCAACTAATCGAGGATGTTGTGAG TCTGATGGAGAACGATGTCAACACTTAATTTTATCCGGGCTCAATCTTTTTGAAATAAAAGAAGAAATTAAAGAGAAAGT TCAAACAAAATATTATACTTAGCTCTACTTTATTCTCTTTTTAAATTGAATTAAAATTCCACGAATAAGATGTTGAAAAA TGGCTTGATTAGTCTATTTAATTTGGGATTTATTTTATTTTTTGGTCGATGTTTTTTTTGTGTGAATTAAAGTTTGATGC TTTGGCCCATTTTAACAAATGATGGGATATTTTTTTTTTCAAATGAAGTAAATAGGACAGATGGCCCAAATGAGAGGTTA CTAACAAAAAAAGAAAAGGCTGATTGAGCCCAAAAAACGAAAGCGTGGGAGTATAAACTAGGAATATACTTTCGACAAAA AATAAATAAATAGGAATATACATATACATAAAATTTGAGACATGAGATATTCATTTCGTGATATCATACTGAGTGACAGT GATTTCTTTTATATTGTTCTTTCTTTCTTTAAGTCATGATAGGTGGACCAAATTATTTTATAAGGAAGCTCTAGTATTAT CTATTATGTATTGTATGGCAGTGTGGGCCTGTTAGATAAGCAGTATTGGTTGGATGATATTGCAACTCCAAGATCTTGCC AATGAGAGCTTCACACACGTTCCACGTTTCTGAAATTGGAGCAATACAACTTCTGAGCTAGATAGATAAAATTATTGTAA CCAATTATAATGATAAATGTTGTCGTCACACCAACGTAGAGTGATACAAGAAGATAGAAAAATGAGAGATATAATAAGTC ACATAATATGAAAAGAATAGAGAAATTAAGATGGAGGAAATTAAAAGTATGAATGTCTTAGTGTTTCATTCTACTCCTTT TTATATTAGTGTTTCATTCTACTCCCATAGTTGGTCAGTTCTAGTGCCCCATTCTTCAATACAACAACACAACATTTCTA TGTTCAACACAACATAGAAATTAAGTAAGAAAAATGGGAGCCCTGTCTGCAAAAACTCTGCTATTGTTGTTGCTACCAAT TGTTATGCTGCTTTCTCTTGTATGTGCTGCTTCTGCTACAAATTCAGCTCACAACACTTTTGTCCAATGCCTTGTAAACC ATTCTGAGCCTTCCCACCCAATAGCTGAAGCAATTTTCACACCGAACACTCCCTCATTCTCTTCAGTCCTGCAAGCCTAC ATCAGAAACCTTCGTTTCAATACCTCCACAACAAGGAAACCATTCCTCATACTCACTCCACTTCATGTTTCCCATGTACA AGCAGCCATTATTTGTGGTCAAAAGCACAACTTGCAGATGAAAACTCGAAGTGGGGGCCATGACTATGAAGGTGTGTCTT ATGTGGCAGAGGATCCATTCTTCATCCTTGACATGTTCAACCTCAGATCCATTGAGGTTGACATAGCAACTGAAACAGCT TGGGTTCAAGCTGGTGCAACACTTGGTGAAGTCTACTACAGAATTGCTGAGAAGAGTAGAAAACATGGCTTCCCAGCAGG GGTGTGTCCCACTGTAGGGGTTGGAGGACATGTTAGTGGTGGTGGCTATGGCAACATGATGAGAAAATATGGCACTTCAG TGGATAATGTTGTTGATGCACAAATAGTTGATGCTCAAGGGAGGTTGCTTGATAGAAAATCCATGGGTGAAGATCTGTTT TGGGCCATAGCAGGTGGTGGTGGTGCTAGCTTTGGTGTGGTTCTTTCCTACAAAATCAAGCTAGTTCAAGTTCCTGAGAC AGTCACTGTTTTCCAAGTTCAGAGGTCTCTGCAGCAAAATGCAACAGACATTGTTTACAATTGGCAGCATGTAGCACCAA CTACCAGCAATGATCTTTTCATTAGGCTTATCTTGGAAGTGGTGAAGGATGCACATGAAGGAACAAAGACAGTGAGGGCC ACCTTCATAGCTCTCTTCCTTGGTGACTCAAAAACTCTTCTTTCTCTCATGAGTGAGACATTTCCTCAATTGGGTTTAAG GCAATCAGATTGCATTGAAACAACATGGCTTAGATCTGTTCTGTTTTGGGACAACATAGACATTTCTACCCCAGTGGAGA TTTTGCTTGAAAGACAGCCTCAAGCCCTCAGATACTTGAAGAGGAAATCTGACTATGTGAAGAAACCAATTTCCAAGGAG GGTTGGGAAGGGATTTGGAACAAGATGATTGAGTTGGAGAATGGAGTGATGTTTTTCAACCCTTATGGTGGAAGAATGGA TGAGATTTCACCATCAGCAACTCCTCTGCCTCACAGGGCAGGGAACCTTTGGAAGATTCAATACCAAGCAAATTGGAACC AACCAGGGGAAGTTGTGGCAAATCACCACATAAATGTGATAAGAGAACTTTACAAGTTCATGACTCCTTTTGTCTCCAAG AATCCTAGACAAGCTTACCTCAACTACAAGGACCTTGATTTGGGGACCAACCACCATGGTTTTCTTAGCAGCTACTCTGA AGGGAGTGTTTATGGGGTTCAGTATTACATGGATAACTTCAACAGGTTGGTTCAAATAAAGACCAAGGTTGATCCTGGCA ATTTCTTCAGGAGTGAACAAAGCATCCCTGTGCTTGGCCTAGTGGGAAGAGCTAAAATGGTGACTGAAAAATCTTTGATT TCCATTTTACTATGTTTGGGTGCTAATTGGATTTGGAAACTCTCACAAGGTCGTTTTAAAAGACAAAAGACAATTCAATA GGCCTTGTAATAAGGATGGTAAATATTCTATTATAGTTGCTTTTGAGATCCATGTTTAGTTTAGAGCCAATGATTGTGTT TTAGATTCTATGGCTAATTATCTGTATAATTCATATCATACGGGGATCTCTAGTGTATGATTTGCAGATTTGGACTAGCT ACTTGCTGGAGAATGGTCCAAGACTAGTTTGGTTTTAATAATCATGTTAGTTGTTACCTATTGTCTTCTAAATTTACATG AAACATTGTGTTTTAGAGATTTCCTTAGATAACAATTTGCATAGGAGTATTAATGAGTGAATATACTATATGTTATTGCC ACATTCATGTCACTTACACATTAGCGGCCGTTGTTACAATTAAAAACAACCAATAATATGTATGATG
CDS sequence (LotjaGi6g1v0266700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGCTCTTTCTCCTAATAAAATACAACTATCACTATTCCCCATTGTTGTGTTGCTTTCTCTTATCTCCTTGTCAAA TTCAGCTCCCCACACCAAAACTTTCCTTCATTGCCTTGAAAGCCATTCAGAGCCCTCACACCCTATAACATCTGCAATTT TCACACCAAGCAATTCCTCATTCTCTTCAGTCCTGCAAGCCTACATCAGAAACCTTCGTTTCAACACCTCCACAACAAGA AAACCATACCTCATAATAACAGCACTGCATGTATCTCATGTACAAGCAGCTGTTATTTGTGGCCAAAAGCACAATTTGCA GATGAAAATCAGAAGCGGCGGTCATGACTACGAGGGCGTGTCGTATGTCGCGGATGTGCCATTCTTCATCCTTGACATGT TCAACCTTAGATCCATTGAGGTTGACATAGCCTCAGAAACAGCTTGGGTCCAAGCTGGTGCAACACTTGGTGAACTTTAT TACAGAATTGCTGAGAAGAGTAAAAAACATGGCTTCCCAGCTGGGGTTTGTCACACAGTTGGGATTGGAGGACACATTAG TGGTGGTGGATATGGCAACATGATGAGAAAATATGGTCTCTCGGTTGATAATCTTCTTGATGCACAAATCATTGATGTTC AAGGTAGATTGCTGGATAGAAAATCCATGGGTGAAGATCTCTTTTGGGCTATTAGTGGTGGTGGTGGAGCTAGCTTTGGT GTGGTTCTTTCCTACAAAATCAAGCTAGTTCAAGTTCCTGAGACAGTCACTGTTTTCCAAGTACAGAGGACTCTGGAGCA AAATGCAACAGACATTGTTTACAATTGGCAGCATGTTGCACCAAACACAAGCAATGATCTTTTCATTAGGGTCGTCATTG ACGTGGTAAACGGTACAAAACAAGGAACAAAGACTGTGAGAGCAACCTTCATAGCTTTGTACCTTGGTGACTCAAAAAGT CTTCTTTCTCTCATGAATGAAACATTTCCTCAATTAGCTTTAAAACAATCTGATTGCATTGAAACAACATGGCTTCGTTC GATTCTGTTTTGGGACACCATAAACATTACCAACCCAGTTGATATTTTGCTTGAAAGACAACCTCTGTCCATCAAATACT TGAAAAGGAAATCAGATTATGTGAAGAAACCAATTTCCAAGGAGGGTTTGGAAGGGATTTGGAACAAGATGATTGAGTTG GTGGATGCAATTCTTTACTTCAATCCTTATGGTGGAAGAATGGCTGAGATTCCATCAACAGCTTCTCCTTTCCCTCACCG TGCTCGGAATTTATGGAAGATTCAGTACCAAGCAAATTGGATGCAGTCAGGGAAAGAGGTTGCTGATCACTACATAAACT TGACAAGAAAACTTCATGATTACATGACTCCTTTTGTTTCAATGAACCCAAGAGAGGCTTTTTACAATTACAAGGACCTT GATTTGGGAATCCACCACAAGGGTAAGAAAAGTTATTCTAAAGGTAGAGTTTATGGAGTGGAGTATTTCAAAGACAACTT TGACAGGTTGGTTCAGGTAAAGAGCAAGGTTGATCCTGGCAATTTCTTCAGGAGTGAACAAAGCATCCCTGTGCTTGGCC TAGTGGGAAGAGCTAAAATGGTGACTGAAAAATCTTTGATTTCCATTTTACTATGTTTGGGTGCTAATTGGATTTGGAAA CTCTCACAAGGTCGTTTTAAAAGACAAAAGACAATTCAATAG
Protein sequence (LotjaGi6g1v0266700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGALSPNKIQLSLFPIVVLLSLISLSNSAPHTKTFLHCLESHSEPSHPITSAIFTPSNSSFSSVLQAYIRNLRFNTSTTR KPYLIITALHVSHVQAAVICGQKHNLQMKIRSGGHDYEGVSYVADVPFFILDMFNLRSIEVDIASETAWVQAGATLGELY YRIAEKSKKHGFPAGVCHTVGIGGHISGGGYGNMMRKYGLSVDNLLDAQIIDVQGRLLDRKSMGEDLFWAISGGGGASFG VVLSYKIKLVQVPETVTVFQVQRTLEQNATDIVYNWQHVAPNTSNDLFIRVVIDVVNGTKQGTKTVRATFIALYLGDSKS LLSLMNETFPQLALKQSDCIETTWLRSILFWDTINITNPVDILLERQPLSIKYLKRKSDYVKKPISKEGLEGIWNKMIEL VDAILYFNPYGGRMAEIPSTASPFPHRARNLWKIQYQANWMQSGKEVADHYINLTRKLHDYMTPFVSMNPREAFYNYKDL DLGIHHKGKKSYSKGRVYGVEYFKDNFDRLVQVKSKVDPGNFFRSEQSIPVLGLVGRAKMVTEKSLISILLCLGANWIWK LSQGRFKRQKTIQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 10 | 10 | - | – | |
| Phobius | 1 | 28 | 28 | - | – | |
| SignalP_EUK | 1 | 28 | 28 | - | – | |
| Phobius | 11 | 23 | 13 | - | – | |
| PANTHER | 12 | 533 | 522 | 3.8E-298 | – | |
| PANTHER | 12 | 533 | 522 | 3.8E-298 | – | |
| Phobius | 24 | 28 | 5 | - | – | |
| SUPERFAMILY | 28 | 253 | 226 | 1.87E-46 | ||
| Phobius | 29 | 544 | 516 | - | – | |
| Gene3D | 30 | 136 | 107 | 2.3E-42 | ||
| ProSiteProfiles | 78 | 252 | 175 | 16.62 | ||
| Pfam | 83 | 218 | 136 | 2.6E-25 | ||
| Gene3D | 141 | 530 | 390 | 6.2E-149 | – | |
| Gene3D | 255 | 469 | 215 | 6.2E-149 | – | |
| Pfam | 473 | 530 | 58 | 1.6E-19 | ||
| Phobius | 545 | 562 | 18 | - | – | |
| Phobius | 563 | 573 | 11 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Molecular function | Flavin adenine dinucleotide binding | Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. | ||
| Molecular function | FAD binding | Interacting selectively and non-covalently with the oxidized form, FAD, of flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes. |
Expression pattern of LotjaGi6g1v0266700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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