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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0268400 |
| Transcript ID | LotjaGi6g1v0268400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Germin-like protein 1; TAIR: AT3G05950.1 RmlC-like cupins superfamily protein; Swiss-Prot: sp|Q6K5Q0|GL21_ORYSJ Putative germin-like protein 2-1; TrEMBL-Plants: tr|A0A151SB73|A0A151SB73_CAJCA Putative germin-like protein 2-1; Found in the gene: LotjaGi6g1v0268400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:58334709..58335799) extracted from Lotus japonicus Gifu genome v1.2.
AAAACACTCTATACACGCCACCAGCATGAGCAAAAACCCATAACTGCTGAACATTATTATTCTTACCACTTCAAATTGAA ATTCAGATGACCATTTCAGCATATTTGTTGTTCACATCTTCTGTTGGTAAGTGGTAACATTGGTTTATAAATACACCTTC ATGCAATGCCATATTCATCCACACCAATACTACAACAAGCATTGCAATTACATATTCCTATATCCCAAAATCTACTAGAG CTTTTTGTGTTACTACTCTCAAATGGCCAATCTCTCATTGTTGCTGGTTGCAATTTTAGCTCTTTCACTTTCATCTGTCA TAGAAGCTACTATTCTCAAAGATTTCTGTGTGACAGATCCAAATAGCTTGGGCTGCAAGGATCCAAAACTTGTGGAGGCA AATGACTTCTACTTTAGCGGTCTTCACATAGCAGGCAACACCACAAACCCTGCTGGTTCTAAAGTAACTCCAGTGTTTGC AACTCAGTTACCAGGATTGAACACTCTAGACATTTCTATTGCTCGCGTTGACTATGCACCATGGGGAATTAACCCTCCTC ACACACACCCTCGCGCCACCGAAGTCCTCACTGTTCTTGATGGAAGCTTAGAAGTTGGATTCATCACTTCTAACCCGGAA AACCGCCACTTCCGGAAAGTTCTGCAAAAGGGTGATGTGTTTGTGTTTCCAATAGGACTTGTCCACTATCAGAGAAATGT GGGATATGGTAATGCTGTTGCCATTGCAGCTCTTAGCAGCCAGAACCCAGGAGTTATCACCATTGGTAACGCAGTGTTTG GGGCAACACCTGACATATCCAGTGACATTCTCGCCAAGGCTTTCCAATTGGACAACACTGTCATCAGTTATCTGCAGTCC AAGTTCTAGACAAGAGTCAAGAGATGAAGTTCAGTTAATTGTTTGCTCTAGTTATTCATTTTGCTGTGTTGATTGAGTGT GGTTATTTCGATACCTTTTTCCATTTTGTATGCTGCTTTAATTTTTAGTTTGGTTTTCCTTGTTAAGTACTTCCTTGGTG TTAATATGTATCATTTGATTAATTTAATTTGCTGCTAAAGGTTTGTTGTGT
CDS sequence (LotjaGi6g1v0268400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAATCTCTCATTGTTGCTGGTTGCAATTTTAGCTCTTTCACTTTCATCTGTCATAGAAGCTACTATTCTCAAAGA TTTCTGTGTGACAGATCCAAATAGCTTGGGCTGCAAGGATCCAAAACTTGTGGAGGCAAATGACTTCTACTTTAGCGGTC TTCACATAGCAGGCAACACCACAAACCCTGCTGGTTCTAAAGTAACTCCAGTGTTTGCAACTCAGTTACCAGGATTGAAC ACTCTAGACATTTCTATTGCTCGCGTTGACTATGCACCATGGGGAATTAACCCTCCTCACACACACCCTCGCGCCACCGA AGTCCTCACTGTTCTTGATGGAAGCTTAGAAGTTGGATTCATCACTTCTAACCCGGAAAACCGCCACTTCCGGAAAGTTC TGCAAAAGGGTGATGTGTTTGTGTTTCCAATAGGACTTGTCCACTATCAGAGAAATGTGGGATATGGTAATGCTGTTGCC ATTGCAGCTCTTAGCAGCCAGAACCCAGGAGTTATCACCATTGGTAACGCAGTGTTTGGGGCAACACCTGACATATCCAG TGACATTCTCGCCAAGGCTTTCCAATTGGACAACACTGTCATCAGTTATCTGCAGTCCAAGTTCTAG
Protein sequence (LotjaGi6g1v0268400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANLSLLLVAILALSLSSVIEATILKDFCVTDPNSLGCKDPKLVEANDFYFSGLHIAGNTTNPAGSKVTPVFATQLPGLN TLDISIARVDYAPWGINPPHTHPRATEVLTVLDGSLEVGFITSNPENRHFRKVLQKGDVFVFPIGLVHYQRNVGYGNAVA IAALSSQNPGVITIGNAVFGATPDISSDILAKAFQLDNTVISYLQSKF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 3 | 3 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 22 | 22 | - | – | |
| Phobius | 4 | 14 | 11 | - | – | |
| PANTHER | 6 | 208 | 203 | 1.5E-112 | – | |
| PANTHER | 6 | 208 | 203 | 1.5E-112 | – | |
| Phobius | 15 | 22 | 8 | - | – | |
| Gene3D | 21 | 208 | 188 | 2.0E-78 | ||
| Phobius | 23 | 208 | 186 | - | – | |
| SUPERFAMILY | 44 | 208 | 165 | 2.43E-46 | ||
| SMART | 52 | 202 | 151 | 9.0E-35 | ||
| Pfam | 54 | 199 | 146 | 3.1E-46 | ||
| ProSitePatterns | 95 | 108 | 14 | - | ||
| PRINTS | 100 | 120 | 21 | 2.4E-26 | ||
| PRINTS | 132 | 152 | 21 | 2.4E-26 | ||
| PRINTS | 165 | 180 | 16 | 2.4E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Manganese ion binding | Interacting selectively and non-covalently with manganese (Mn) ions. | ||
| Molecular function | Nutrient reservoir activity | Functions in the storage of nutritious substrates. |
Expression pattern of LotjaGi6g1v0268400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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