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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0274400 |
| Transcript ID | LotjaGi6g1v0274400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tyrosine decarboxylase; TAIR: AT2G20340.1 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; Swiss-Prot: sp|P54769|TYDC2_PAPSO Tyrosine/DOPA decarboxylase 2; TrEMBL-Plants: tr|V7AQJ2|V7AQJ2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0274400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:59129541..59131097) extracted from Lotus japonicus Gifu genome v1.2.
ATGAACCCCTTAGATCCTAAAGAATTTAGAAAGCAAGGGCACATGATCATTGACTTCCTTGCTGATTACTACCAGAATGT TGCCAACTATCCAGTGTTAAGCCAAGTAGAACCTGGTTACCTTGCAAAATTGTTGCCCCCTTTTGCCCCTCACAATCCTG AATCCATTGAAACCATCCTACAAGACTTGCAGCAACACATAATCCCAGGCATAACTCACTGGCAGAGTCCTAATTACTTT GCTTACTTTCCCTCCAGTGGAAGCACAGCAGGGTTTCTTGGAGAGATGATAAGCACTGGACTCAATGTTGTTGGGTTCAA CTGGGTGTCATCTCCGGCCGCAACAGAGCTAGAAAGCATTGTCATGGATTGGCTTGGCCAGGCTCTAAAGCTCCCTGATG CTTTCCTTTTCAAAGGTGGTGGAGGAGGTGTTTTGCTAGGGACAACTTGTGAGGCCATCTTGGCCACACTAGTTGCATCC AGAGATCAAATCCTTCATCAAATCGGTAGCGAAAATTTAACAAAGCTTGTTGTTTATGGCTCTGATCAAACACATTGTTC AGTTCAAAAAGCAGCTCATATAGTAGGAATTCACCCCAAAAACATCAGGGCCATCAAGACTGTGAAGTCAAAATCATTCA GTTTGGAACCAGAAGCTCTATTATCAGCAATTCAGTCAGATGTTAAAAAGGGGTTGGTTCCTTGTTATCTCTGTGTCACT GTGGGCACAACTTCAACAACTGCAATTGATCCAATAGGACCACTGTGTAAGGTGGCAAAAGATTACTCCATGTGGGTCCA TGTTGATGCTGCTTATGCCGGTAGTGCATGCATTTGCCCTGAGTTTCGACACTTGATTGATGGTGTTGAGGATGCTGACT CGTTTAGCTTCAATGCTCACAAATGGTTTCTGACAAACTTAGACTGTTGCTGCCTTTGGGTGAAGGATCCACCTTCTCTG GTAAAGTTCTTGTCAACAAATTCAGTGTACTTGGAGAACAGTGCTTCCGAGACCAAGCAAGTGGTGGACTACAAAGATTG GCAGATACCGTTAAGCCGGAGATTTCGCGCACTGAAGGTGTGGCTTGTGCTCCGAAGTTATGGTGTGGCTAATCTTCGAA ACTTCCTTAGGAGTCATGTTGAAATGGCAAAAACTTTTGAGGAGTTGGTAAAGAAGGACACCAGGTTTGAGATTGTAGTC CCTAGAAATCTTGCTGTTGTTTTCTTTAGGCTTTTACCATCAGTGACTACAAAGTTTGCTAATGGAAAGGTCCAAAATGG AAATCTCATTGCTAATGGAAAGGTCCAAAATGGAAATATCATTGCCAATGGAAAGGTCCAAAACGGAGACCTCAAAACTA AGGATGTTGCAAATGAGATGAATCGTAAACTGTTAGATTCCATAAATGGTTCAGGCACTGTGTACATGACTCATGCTGTT GTTGGAGGAATTTTTGTGATTAGGTGTGCAATAGGGGCAACCTTAACAGAAGAAATGCATGTGATCAAGGCCTGGAAGGT GGTGCAAGAACATGCAGATGTCATCATAAAATACTAA
CDS sequence (LotjaGi6g1v0274400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACCCCTTAGATCCTAAAGAATTTAGAAAGCAAGGGCACATGATCATTGACTTCCTTGCTGATTACTACCAGAATGT TGCCAACTATCCAGTGTTAAGCCAAGTAGAACCTGGTTACCTTGCAAAATTGTTGCCCCCTTTTGCCCCTCACAATCCTG AATCCATTGAAACCATCCTACAAGACTTGCAGCAACACATAATCCCAGGCATAACTCACTGGCAGAGTCCTAATTACTTT GCTTACTTTCCCTCCAGTGGAAGCACAGCAGGGTTTCTTGGAGAGATGATAAGCACTGGACTCAATGTTGTTGGGTTCAA CTGGGTGTCATCTCCGGCCGCAACAGAGCTAGAAAGCATTGTCATGGATTGGCTTGGCCAGGCTCTAAAGCTCCCTGATG CTTTCCTTTTCAAAGGTGGTGGAGGAGGTGTTTTGCTAGGGACAACTTGTGAGGCCATCTTGGCCACACTAGTTGCATCC AGAGATCAAATCCTTCATCAAATCGGTAGCGAAAATTTAACAAAGCTTGTTGTTTATGGCTCTGATCAAACACATTGTTC AGTTCAAAAAGCAGCTCATATAGTAGGAATTCACCCCAAAAACATCAGGGCCATCAAGACTGTGAAGTCAAAATCATTCA GTTTGGAACCAGAAGCTCTATTATCAGCAATTCAGTCAGATGTTAAAAAGGGGTTGGTTCCTTGTTATCTCTGTGTCACT GTGGGCACAACTTCAACAACTGCAATTGATCCAATAGGACCACTGTGTAAGGTGGCAAAAGATTACTCCATGTGGGTCCA TGTTGATGCTGCTTATGCCGGTAGTGCATGCATTTGCCCTGAGTTTCGACACTTGATTGATGGTGTTGAGGATGCTGACT CGTTTAGCTTCAATGCTCACAAATGGTTTCTGACAAACTTAGACTGTTGCTGCCTTTGGGTGAAGGATCCACCTTCTCTG GTAAAGTTCTTGTCAACAAATTCAGTGTACTTGGAGAACAGTGCTTCCGAGACCAAGCAAGTGGTGGACTACAAAGATTG GCAGATACCGTTAAGCCGGAGATTTCGCGCACTGAAGGTGTGGCTTGTGCTCCGAAGTTATGGTGTGGCTAATCTTCGAA ACTTCCTTAGGAGTCATGTTGAAATGGCAAAAACTTTTGAGGAGTTGGTAAAGAAGGACACCAGGTTTGAGATTGTAGTC CCTAGAAATCTTGCTGTTGTTTTCTTTAGGCTTTTACCATCAGTGACTACAAAGTTTGCTAATGGAAAGGTCCAAAACGG AGACCTCAAAACTAAGGATGTTGCAAATGAGATGAATCGTAAACTGTTAGATTCCATAAATGGTTCAGGCACTGTGTACA TGACTCATGCTGTTGTTGGAGGAATTTTTGTGATTAGGTGTGCAATAGGGGCAACCTTAACAGAAGAAATGCATGTGATC AAGGCCTGGAAGGTGGTGCAAGAACATGCAGATGTCATCATAAAATACTAA
Protein sequence (LotjaGi6g1v0274400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNPLDPKEFRKQGHMIIDFLADYYQNVANYPVLSQVEPGYLAKLLPPFAPHNPESIETILQDLQQHIIPGITHWQSPNYF AYFPSSGSTAGFLGEMISTGLNVVGFNWVSSPAATELESIVMDWLGQALKLPDAFLFKGGGGGVLLGTTCEAILATLVAS RDQILHQIGSENLTKLVVYGSDQTHCSVQKAAHIVGIHPKNIRAIKTVKSKSFSLEPEALLSAIQSDVKKGLVPCYLCVT VGTTSTTAIDPIGPLCKVAKDYSMWVHVDAAYAGSACICPEFRHLIDGVEDADSFSFNAHKWFLTNLDCCCLWVKDPPSL VKFLSTNSVYLENSASETKQVVDYKDWQIPLSRRFRALKVWLVLRSYGVANLRNFLRSHVEMAKTFEELVKKDTRFEIVV PRNLAVVFFRLLPSVTTKFANGKVQNGDLKTKDVANEMNRKLLDSINGSGTVYMTHAVVGGIFVIRCAIGATLTEEMHVI KAWKVVQEHADVIIKY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 495 | 495 | 2.0E-274 | – | |
| Gene3D | 1 | 84 | 84 | 1.5E-33 | – | |
| PANTHER | 1 | 495 | 495 | 2.0E-274 | – | |
| SUPERFAMILY | 5 | 491 | 487 | 2.02E-130 | ||
| PRINTS | 9 | 28 | 20 | 1.4E-75 | ||
| PRINTS | 32 | 49 | 18 | 1.4E-75 | ||
| Pfam | 38 | 411 | 374 | 2.5E-111 | ||
| PRINTS | 50 | 69 | 20 | 1.4E-75 | ||
| PRINTS | 76 | 95 | 20 | 1.4E-75 | ||
| Gene3D | 86 | 377 | 292 | 5.5E-97 | ||
| PRINTS | 97 | 115 | 19 | 1.4E-75 | ||
| PRINTS | 116 | 135 | 20 | 1.4E-75 | ||
| PRINTS | 141 | 161 | 21 | 1.4E-75 | ||
| ProSitePatterns | 294 | 315 | 22 | - | ||
| PRINTS | 350 | 365 | 16 | 1.4E-75 | ||
| Gene3D | 378 | 496 | 119 | 2.2E-33 | ||
| PRINTS | 393 | 412 | 20 | 1.4E-75 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Cellular amino acid metabolic process | The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells. | ||
| Molecular function | Carboxy-lyase activity | Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound. | ||
| Biological process | Carboxylic acid metabolic process | The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-). | ||
| Molecular function | Pyridoxal phosphate binding | Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. |
Expression pattern of LotjaGi6g1v0274400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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