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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0276200 |
| Transcript ID | LotjaGi6g1v0276200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT4G19670.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9SKC3|ARI9_ARATH Probable E3 ubiquitin-protein ligase ARI9; TrEMBL-Plants: tr|I1L0B2|I1L0B2_SOYBN Reverse transcriptase-like domain-containing RBR protein; Found in the gene: LotjaGi6g1v0276200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:59299487..59305156) extracted from Lotus japonicus Gifu genome v1.2.
GTGAGTCTGATACTTCTAATCCAGCAGGGTATTCTCCATTGATGAAGTTGCACTTGGCGAATTTCTCTCACCCCCTGTCA GCACACCAATTTTCCATTCAATGGTATGTGTATCGATAGTTGAAAACAACTCCTGGTCACTCTGGAGCAGACCCTTATGG TATTGAAGGTTGTAGAAGTATTGATTATCAAACTGATCGAGAGTTGTCATATCTAAATTTCCCTACTAGTTTCACCCCTT TCCTCTTCTTCAATGATTTTAAAGTTTATATTTTTAGCTAATGATATTAAAAACCTTGCAATGCTCAAATCAATGATATT AAGGAGAATTAAACATGTACCACTTAAACAACTCATGTGTTTGATAATCACAGTTTAATTAATAATAAAAATAGTAATCA ATATCATAAATATGATTATACCAAATTCCAATTACAGAGATAAGGAGTATCGAAGCTTCACTTCTTTTGCTTCATTCCAT TTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGTTACCTACTGTGTACCTTGGATGATGAAAGTCAATGA CGTAGTGGCTCCGTTTCAATTCGATCTTCTTCTCTCTTCCTCTCTTTGGTGAATCAGATTTCTGAATCACATGGTGAAAA ATCTTCACTTCTTCTTAAGGATTTTGATTCATCAATTGGAGAACCCAAAAGGGCTAGTACTTGTTGCAAATCAAAGAAAA ATCAGATTTTGAGATCGATTTCGTTGATGGGTCATGCTGAAAAATTCTAGGTGAAATCTCAGGTAATTTGCTGGGAAAAT GGAAGATCAAGCTGTTAATGTTGTTGTAAGAGAGGAAGAAGAAGAAGAAGAAGTTGAAGAATTTTGCAGTTGCTGTGAAG ATGAAGATTTGGAAGCATGGAAGGAAACTGAGGAGCCAGTGGGTGTGGAAGGCTTGAAGGATGAGCTTGATGAATTTTCT GTAAGATTGTTTTTTAAGGGGGTGTCAATAGCTAAGGTTGAGAATTCTGGGTTTTCTGGAATTGGAGTGTTTATGGAAAG ATCAGCAAGTCTTCCTGCTATAAGGGTGCAGAAAAAGCTTGAATTTTATGCAGAGGAGCCTGTAGTTGACTGCTTGGCAC TCATGGATGGTTTGCTGGAAGCTGTGAAGAACAAGATCCACAAGGTTTATGCTTTCACAGATTCTGAGTTGTTGTATAAT CAGGTTAGCTTTCAGTGTTTAATCTTGTTATTTCTTAGTTTTCATTTTCTTATTGCATCTAGTATGTATGTTACTATGTT CTATATTTCTCAACCATCCTATTTGATTTTTCCTTTTTGAGCTTCATTCATTTGTATATAGAATTGTTTTAGAGGTTTGT GTTCTAGGCTTGTAGCAGCCACACCATGTTTCAATTTGAACATTACAATACTTTTCTCCATTAAAGCTGAAAGGGATACA TTTTTATTTAGTGAATGTTTGGAAATCTTTCTACAATTGATTCTACTATCAGAATCAATTCTGGGGAGAAGTTCATGTTA CTAGCTTCTGAATTTCAGTTGATTAGGAGAAAGGGAAGTTGATGCAAACATGAACTTAGCCTTTTTCTTGTAACTTGTAA GTAATGGGAATGGTTTGTGGTCAAGGAGGATTGATTTACCATTTGAATATAAGGAGATAGCCTACACTCCAATTTTGTGC GAAGAAGACAGTAATTGACATTGCTTTTACATGTGCCACTAGCCTCTAATAATTCTGTAATGTGCATTTGTGTGTGTGTT TTCCCGATCACCTATCATTAACTATCATTTTCTTAATGTGAATATTTTTGGACAGATAACATCTGAAAAAGAATTGGACA TGCCACTTTTGATGGCTCTGAAAGGAAGGATTTTGGAACATGCCAAGAATTTTGAAACTTTTGCTCTGAAACTCATACCT GGCACCCTTCTCGAGCAGCCGCTGCAGCTGGCTAAAGTAGCTATTGGACTTGTCACCTTCCCTGTCTATGGTGAGAGATT GCTTGAGAACTGTTCTATTTGTTGTGATGAGAAGCCAGTGTCTTTTATGGTTACATTGAAATGTTCACACAAGTTCTGTT CACATTGCTTGAGATCCTATGCTGATGGTAAAGTACAATCCTGTCAAGTCCCTATGAGATGTCCTCAACCAGGATGCAAA TATTGCATCTCTGCAACTGAGTGCAAGTTTTTTCTTCCATTTACGTCCTTTGAATCTTTGGAGAAAGCCCTTTCAGAAGC AAGTATTGCCAAGTCAGATAGAATTTACTGTCCATATCCAAACTGCTCTGTTCTACTTGATCCTAGCGAATGTTTATCAG CTAGGGCCAGTTCATCTAGTCAGTCAGACAATTCTTGTGTCGAGTGTTCTGTTTGTCGGAGGTTTATCTGCGTGGAATGT GAGGTTCCTTGGCATTCTTCTATGAGCTGTGAAGAATACCAGATTCTGCCAGTGGAGGAGAGGGATGCTTCTGACATTAC CTTGCATCGTCTTGCTCAGAACAAAAGATGGAAGCGTTGTCAGCAATGTCGTAGAATGATTGAGCTTGCTCAAGGTTGTT ACCACATGACATGCTGGTAAGATACAACTGCTCTTTATGAAAATAAAAAGTTTTTTATTAATTTTAAATCTATTTCATTA TATAGTCTAATAATGCAGATCTGAAACATACTTAAATGCTGGCAGTCAAAAAGTATATATTGAAAGTTGAATAACATAGC TTATAAAGTTTACATGAATAAAATTGAGAAGCCTTCCTATAAAGACAAGTTTTGCGTGCAAGTTCTGTTTCTTTGTAGAA TTGCATTTCCTTATCATAGTATCCTAAGAACCTGTATTCTCTAAAAATGTAAAATAAAAATGTCTGGTATAGACCTTAAT TAAAATTCTGTTTGAGAGTTAAAAACATTTGAAATTTGAATGTAATTTAACCACGGAATAAAGACCCTGGCACATTTATA TGATAACTTTAGACCTAAGGAAATGAACATTCGTCTTGATTCCCTCGTTGTGTCTGCACAATTTAGGCCTCAGTATCAGT TTCAGATTGCTCTATTCAATGTAATTTATGGCCTGATGCGGCAGATTCGAACTGGTTTGGTCCTCTAGGTTACAAATACA TGGTGGGTGCTAGAATAGTATATATTTTGTGAACAGGGGTATCAGAATGATAAACTCCTCTTCCCTTTTTAACTATTGTG AAAACAAATTAGAGTTGTAAAACTAAAGCCAAAAAAATTAGAACTCAGGGCATGTTTGGTTTTGTTAAACATTTTCTATT TTCATTGATAATTTACGGGAAAAGGTGAAAATGATTTATTTCTTATTTCCAAAGAATTGTGCTGGAAATATTGTTTTTTC CATTTCCTGTTCAAATCTCTGACAGTAGGAAAGTAAGTGGAGAAAAATCTTTCTTGCTGCACTATTGAATTGAAACAATA GACATGTGATCATAGATGACTAACTGGTTGTGTCGGCATGTTCAATCTTTTTCCGAAAATCATAAAATATATAAAGCTTG CACTATTACTAAATTTGAATATGGTTTGGAATGCAAAAGGCCAATTGAATGGATATTTTGGAAGATAGTAGAGTCGATTG ATGAGGGGAGATGGGATGTAGGGTTGGAAAATAGTTTTGTGCTCCAGATACTTCATGATTTGAAGGCTTGAGAAGACTAT AGTTGAGTTCTACCGTGATTCTGCAGAAGGAATCATTCTAAGACGAGTAAAGAAGGAATCATTACGAAAAATATTCCAAA TTTTTAGTTGGGATTGCAAAAGGAAAATTTTGAACTTCTGAGGCTTTTCTTACGACTGTTAGTATTATGAGTTTAGGGTG ATAAAGATGATGAGTGTTTGAAACTGTGTAAGGGGATATGATCACTACTGAAATTCACTGGCAGTGAGGAATGAAGTGGA GTGATGCATAGAACACTCGGTAGTCATACCGGTTAAGCACTTAATCTCTATCAAAGTAATAATTTCATCATCTGAAATTG CTTAAGTATATTACTCAAGTTTTCCAAATCGAAAATGGAATTAAATCCCTGAAATTAGGCTCAACCCTTGACTGTAGGAT TGGATTCAAGCCTATATGTCCTTTATGCTCAATTTTATTGGTATGTATTTACATGTTTATAAAGCTAGTTATCCATTTAA TATCATATTACCAGAGAGGTAGTATATAAGATTTATGATTCAAATAATAGCCTTTGTATGTTGATAACTTTGTTCTTAGA TTTGAGATATGATGCATGTTTGGTGATGATATGATACATTGTTGAAAAGTTCTTAGATTCACATGTTTGATTTATCCCTT CCTACGATTTATCACATACGTTCCTAGAGAAATTGAGCCAACAAAAAACCCCACTTTCAGTTGTAGCTTAAAATTTCTAA TAGTTTTCAATTAATTTGTTATAATTTCAGGTGTGGGCACGAGTTCTGCTATTCTTGTGGCGCGGAGTATAGAGATGGCC AACAGACATGTCATTGTGCATTTTGGGATGAGGACAACTCACAAGACTCCTTGACACACTCTCTTCAAGAATCAGAACAA TGGGCATGTGAGACTTTCCATTCCTTCTCCATGATCATGGATCAATACTCAGACCAAGAAAGATCTCACCTCGCGCTTTT ACAAAGGTTCCTGGCTGGTGATTCTGGTCTTAGTGACCATAATCCCCGCCAATCTCCTCCCCGCTTTACAGACTCGTACG TAGACCCCATGAAAGATCTTCATCAACTTCCATGGCTAGAGAGATTTGTGTCTGTGATAAGTGATAACTACTATGAAGAT TACCATGCTAGATCCTACACTACCTAATTAGTTCATCAACTTACAAATCTCAAACTGAGCTTTGAAAGGATGTGAAAAGA GTTTCTCACTCTGTCCACTTCTCATCATGAGGTATAGCAACATTTACATCATGCAAATTCTTATATCAAGGTGAAGAATC TGTTCATGATGATTTTCTTTAAAGAAAGAATAAGAAAGAGGAACATTGGAAGAGAAAACAGTTGCTTTTTGTTGGGGCTT GGGTAAGAATACAATGATGGCCAAATGAAAGAAACTCATGATTTTATTTTTCATCACTGGATGCCCCTAGATTTAGTGCA TGTGTGAAAATTCTTCTATGATTGATTTTAAAGTCAGAATTAATCATGGGGAAAAACTTCCTTGTGTATTTTCTGGTTGT CCGAATTGATTGGAAAACGAAGTTGATCCAAACATGCTATTGAGTATGCTTGCTTACACTATCCTACTCCATGGCTAACT AATTGTTAAACAGAATTACCTATTCACATCATCATTATGAACTTGTTAACCATTTTATTGAGTCAATTTAACTCTTAAAA GGAAATAACACAATTTTTTATTCATTTGAAATAACCAACATGGTTCTCATGTCAACTCATCGTTCAAACAAGTCACTTAG TTGTGTAAATCAACCTAACCTTGGCCCTTGTAATTTTATCAGCACCTATGTTGCTTGATATTTTTTTATTAAGCTTAGTG ATCAGTGTATATTGTGGTATGGGCTACAAATTATCTATCAAAGTGCCTATTTGCCAAAGAATAATGTTACTCACACACCT CTCTTTTGAGGTGTGTGAGGTGAAATGATGAGAGAGATAGGAAGAAAAGAAAAAGTAAGGGAGAGAAAGT
CDS sequence (LotjaGi6g1v0276200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGATCAAGCTGTTAATGTTGTTGTAAGAGAGGAAGAAGAAGAAGAAGAAGTTGAAGAATTTTGCAGTTGCTGTGA AGATGAAGATTTGGAAGCATGGAAGGAAACTGAGGAGCCAGTGGGTGTGGAAGGCTTGAAGGATGAGCTTGATGAATTTT CTGTAAGATTGTTTTTTAAGGGGGTGTCAATAGCTAAGGTTGAGAATTCTGGGTTTTCTGGAATTGGAGTGTTTATGGAA AGATCAGCAAGTCTTCCTGCTATAAGGGTGCAGAAAAAGCTTGAATTTTATGCAGAGGAGCCTGTAGTTGACTGCTTGGC ACTCATGGATGGTTTGCTGGAAGCTGTGAAGAACAAGATCCACAAGGTTTATGCTTTCACAGATTCTGAGTTGTTGTATA ATCAGATAACATCTGAAAAAGAATTGGACATGCCACTTTTGATGGCTCTGAAAGGAAGGATTTTGGAACATGCCAAGAAT TTTGAAACTTTTGCTCTGAAACTCATACCTGGCACCCTTCTCGAGCAGCCGCTGCAGCTGGCTAAAGTAGCTATTGGACT TGTCACCTTCCCTGTCTATGGTGAGAGATTGCTTGAGAACTGTTCTATTTGTTGTGATGAGAAGCCAGTGTCTTTTATGG TTACATTGAAATGTTCACACAAGTTCTGTTCACATTGCTTGAGATCCTATGCTGATGGTAAAGTACAATCCTGTCAAGTC CCTATGAGATGTCCTCAACCAGGATGCAAATATTGCATCTCTGCAACTGAGTGCAAGTTTTTTCTTCCATTTACGTCCTT TGAATCTTTGGAGAAAGCCCTTTCAGAAGCAAGTATTGCCAAGTCAGATAGAATTTACTGTCCATATCCAAACTGCTCTG TTCTACTTGATCCTAGCGAATGTTTATCAGCTAGGGCCAGTTCATCTAGTCAGTCAGACAATTCTTGTGTCGAGTGTTCT GTTTGTCGGAGGTTTATCTGCGTGGAATGTGAGGTTCCTTGGCATTCTTCTATGAGCTGTGAAGAATACCAGATTCTGCC AGTGGAGGAGAGGGATGCTTCTGACATTACCTTGCATCGTCTTGCTCAGAACAAAAGATGGAAGCGTTGTCAGCAATGTC GTAGAATGATTGAGCTTGCTCAAGGTTGTTACCACATGACATGCTGGTGTGGGCACGAGTTCTGCTATTCTTGTGGCGCG GAGTATAGAGATGGCCAACAGACATGTCATTGTGCATTTTGGGATGAGGACAACTCACAAGACTCCTTGACACACTCTCT TCAAGAATCAGAACAATGGGCATGTGAGACTTTCCATTCCTTCTCCATGATCATGGATCAATACTCAGACCAAGAAAGAT CTCACCTCGCGCTTTTACAAAGGTTCCTGGCTGGTGATTCTGGTCTTAGTGACCATAATCCCCGCCAATCTCCTCCCCGC TTTACAGACTCGTACGTAGACCCCATGAAAGATCTTCATCAACTTCCATGGCTAGAGAGATTTGTGTCTGTGATAAGTGA TAACTACTATGAAGATTACCATGCTAGATCCTACACTACCTAA
Protein sequence (LotjaGi6g1v0276200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDQAVNVVVREEEEEEEVEEFCSCCEDEDLEAWKETEEPVGVEGLKDELDEFSVRLFFKGVSIAKVENSGFSGIGVFME RSASLPAIRVQKKLEFYAEEPVVDCLALMDGLLEAVKNKIHKVYAFTDSELLYNQITSEKELDMPLLMALKGRILEHAKN FETFALKLIPGTLLEQPLQLAKVAIGLVTFPVYGERLLENCSICCDEKPVSFMVTLKCSHKFCSHCLRSYADGKVQSCQV PMRCPQPGCKYCISATECKFFLPFTSFESLEKALSEASIAKSDRIYCPYPNCSVLLDPSECLSARASSSSQSDNSCVECS VCRRFICVECEVPWHSSMSCEEYQILPVEERDASDITLHRLAQNKRWKRCQQCRRMIELAQGCYHMTCWCGHEFCYSCGA EYRDGQQTCHCAFWDEDNSQDSLTHSLQESEQWACETFHSFSMIMDQYSDQERSHLALLQRFLAGDSGLSDHNPRQSPPR FTDSYVDPMKDLHQLPWLERFVSVISDNYYEDYHARSYTT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 418 | 408 | 1.1E-69 | – | |
| PANTHER | 11 | 418 | 408 | 1.1E-69 | ||
| Gene3D | 56 | 187 | 132 | 1.1E-7 | ||
| Pfam | 68 | 170 | 103 | 8.7E-9 | ||
| ProSiteProfiles | 197 | 415 | 219 | 28.058 | – | |
| Gene3D | 198 | 281 | 84 | 5.6E-13 | ||
| SUPERFAMILY | 199 | 275 | 77 | 2.69E-11 | – | |
| ProSiteProfiles | 201 | 245 | 45 | 10.439 | ||
| ProSitePatterns | 218 | 227 | 10 | - | ||
| SMART | 268 | 340 | 73 | 1.0E-9 | ||
| Pfam | 271 | 340 | 70 | 9.4E-10 | ||
| SMART | 350 | 409 | 60 | 0.084 | ||
| Gene3D | 352 | 465 | 114 | 1.2E-10 | – | |
| SUPERFAMILY | 353 | 417 | 65 | 6.62E-15 | – | |
| Pfam | 361 | 409 | 49 | 7.2E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA-DNA hybrid ribonuclease activity | Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters. | ||
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi6g1v0276200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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