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LotjaGi6g1v0276400.3

Overview

Field Value
Gene ID LotjaGi6g1v0276400
Transcript ID LotjaGi6g1v0276400.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Vesicle-associated membrane protein, putative; TAIR: AT2G33120.2 synaptobrevin-related protein 1; Swiss-Prot: sp|P47192|VA722_ARATH Vesicle-associated membrane protein 722; TrEMBL-Plants: tr|I3S869|I3S869_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0276400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:59343946..59347021) extracted from Lotus japonicus Gifu genome v1.2.

CAAAACCAGAACCAGAAGCCACTGATCTACGCCTTCGTTTCTCGCGGCACCGTCATCCTCGCCGAGTTCACTGAATTCAG CGGTAACTTCAACTCCATCGCGTTTCAGTGCCTTCAGAAGCTTCCTTCCACCAGCAACAAGTTCACCTACAACTGCGATG CTCACACCTTCAACTTCCTCGTCGACAATGGCTACAGTATGTTGTTCCCCATTGAGATCTAACTCCTTTGCTTTGCTATT CTTAAAATGTGACTTCATAGGGTATTTTCGTTGAAGCTTTGTCTATGTATTTGCTCATAGCACTTGTTACATTGTTGTGT TTTGTATGTGTAGGTAGGCTGGTGTTAAACCCTAGATTTTTTTCTCATTTTTTTGTTGATTTCATTTTGAAGCAGAAAAC TAGCATTTCTATTCATGCCATGAAATTTTATTTGGAAACTGATGCTAGTCCAAGACCATTTAAATTATTCCTTAAGTTAT CAATCAATTATCAATGTGTGCTTTTATCCCCTTTTTTTTATCAAAAATGTTTGGCATTTCCGGTTACTTGTATTTTTAAG CTATATAATCTGCTTGGATTGGTGGAAGCAAAGTCTTATTCTAGCATATGATGACTGGCTTAGTTTCTTATGCTTAATAT TTGAAATTTTGAATGCTAAAAGCTGAAATGGACCTATACATGGGATCAAGGCTTCATGTTAATGTTAGTTATTTGGTGAT CTTCTTAATGCCGGTTAAGTTACGTATTTGGTCACCTATACTAATTGGGTTCCTGGATCATCTATCTTGGTTTTTTGTTC CGTGGCAAAATTAGTTTGTATGATTTCTTGTGGACAATTCTATCGTTGACATGTTAAAAACTGGTCCACCCATTAACATG ATTTTACTACTAAATTTAGTTCATGTTGTTTACAATATGCTCCTTATGTGCCTAAATTGATTTGCGGAGAAGCCCCTTTT AACTCGTGAACTAGATTTTTCTTGGTCCATGGGAGACAAAGCCATTTCTTATAATGTATTTTGAAGCTTTTTAATTTGTT TTGAGGGTTCGAGGCCAACATTGATTTGGACCTCTCAGAGTTTACTGATATACAGGAATTTCAATGTATAAAACTTATGA AAAGATTAAAGAAACAAGAGAGTAACATCTATATGTGCTACTTTAACTTTAAGAATGTACTTGAATGGTAGGGGTAACAA TATGCGTTGCTAGCTTAACTAATATTCCAGCATTACTGTTTTTTCTATTGTCTATAGCTCCTAATTTTGTCAACTGATAC TTATTATGCTGAGGTTAGCCTTCAGAAATGTCTGACTTCTGTAATTTTTTTAGCATATTGTATTGTTGCGGACGAATCAG TTGGAAGGCAGGTGCCCATGGCTTTTCTAGAGCGTGTCAAGGATGATTTTGTGTCAAAATATGGTGATGGAAAGGCTGCC ACTGCTCCTGCCAACAGCCTTAACAAGGAATTTGGGTATGAAGCTTCTGTTCTATAAAGTTTAAGCTGGTGGGTTTCTAG TATTTTGGGTTTGGCTAATGTGTCATCCTCTTTACACAGGCCAAAATTGAAGGAACATATGCAGTACTGTGTTGATCATC CTGAAGAGATAAGCAAGCTTGCAAAGGTGAAAGCTCAGGTTTCTGAAGTTAAAGGTGTCATGATGGAGAATATAGAAAAG GTATAGATAATCTACTTAGATGCATTTATTTAAGAGGGTGTTGCGACAGAAACTGAAATATCAAATAGTGTAATTAACTA CAAGAGCCATTTTTGCCAAGAGAAAATATTAATGTGATATTGATTCCCAAAAAATGTAGACAACAGAACATATTAAATCT CTGAAACATTTAGAACTTCAAATTATTTCAGTTTATATTTTATGAAATTCTTGCACTGTGCTTGTGAAACATTTGATATA ACTACAAGTCCAGCTTAGGCATGTCAATTGATGATCTGGCATAACCACATTCAGATATTAATTTTCATATATGTGACGGC AAACTGGAAAGATAATGAAAATGGTTGTTGATCTTAGAGTAGCTAAGTTGCATAGATTGGTAAAACATAGAACCCAATAA GTTCTCCATTCCCCTTTTCAGATGGAACCCATTTCCCATCATGTTTTATGTTCAGGTTTTAAGTATCTATTATAGTTTCG ATTGGAAGAGCCCAACAACACTGAAGGTAGATGGAAAACAAAATCCTGCCTAGTCTAGAGTTTGATTGTGAGAAAGCTTA TGAGCAACTGAGTTTGTGTTCTTAGAATCTTAGTCTAGATGGAAAAAGTGGCTTTGCTATTCTTTCTATACCGTCTTTCT GGGTCATGAATGGCCTGTTTTCATGTACACTACAGAATTGGGTAAGAGAACATTCTACGCACATTCATGTCTCCTTTGTG GTTGATGTTTTACTAGTAATGAAGGGCATTTGTTGGAGTAGAGATACTGTTAATGTTCAGACCGCCCCACATATCTTTGA GACTAGCTAATAGTAATAACACTATTTTAATCAGAGTAGTCATGGTATATTTGCTTCAGCTTAATTTTAGAGATAGAATG ATTTTCTTAAAAGGCTCCCAAAAAATTGCGCAGAAAGCAGTTATTTTTCAGATTATGCTAATCCGAAAACCCACTTAATA GTGTACAATAGTGGGGTGTGTGGCTGCACCAGGAATTTCTTGCGTTATGTTTTCCTATATTGTGCTTAGCACTGGGATCC TGGCCACTCCACTGAACAGGAGTTTCATGCCTTATGCTCATATACTCTATCTCTCTCTTTCCCTATTGAAGTGTGTGCTA CCCCTTTAATTGGATTAACATGTCTAAATGCATAAGGATATTTAATTTAATCTGGTTATATTGACATGTTAACTATTTGA TGTAGGTTCTGGACAGGGGTGAAAAGATAGAGCTTTTGGTGGACAAGACTGAGAACCTTCATCACCAGGTTAGTTACTAT ATTTTTTACAGCTTATCTATGCTTAGAATGGAGTTGGTTGACTATTTTTGAAGTGGATACTAAGTAGTGCATTTCAAATT ATTACTCTTGGACCTACTACTTACATCCACTTTTAA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0276400.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTTTTCTAGAGCGTGTCAAGGATGATTTTGTGTCAAAATATGGTGATGGAAAGGCTGCCACTGCTCCTGCCAACAG CCTTAACAAGGAATTTGGGCCAAAATTGAAGGAACATATGCAGTACTGTGTTGATCATCCTGAAGAGATAAGCAAGCTTG CAAAGGTGAAAGCTCAGGTTTCTGAAGTTAAAGGTGTCATGATGGAGAATATAGAAAAGGTTCTGGACAGGGGTGAAAAG ATAGAGCTTTTGGTGGACAAGACTGAGAACCTTCATCACCAGATCCACTTTTAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0276400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAFLERVKDDFVSKYGDGKAATAPANSLNKEFGPKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEK IELLVDKTENLHHQIHF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.30.450.50
1 49 49 1.0E-9 –
PANTHER
PTHR21136:SF92
1 95 95 2.4E-58 –
PANTHER
PTHR21136
1 95 95 2.4E-58 –
ProSiteProfiles
PS50859
1 36 36 11.19
IPR010908
SUPERFAMILY
SSF64356
2 43 42 4.85E-6
IPR011012
CDD
cd14824
2 43 42 5.56457E-9 –
SUPERFAMILY
SSF58038
46 93 48 6.28E-16 –
Gene3D
G3DSA:1.20.5.110
50 97 48 2.1E-18 –
Pfam
PF00957
51 93 43 3.5E-15
IPR001388
ProSiteProfiles
PS50892
52 97 46 15.403
IPR042855
CDD
cd15843
52 94 43 1.02694E-18 –
PRINTS
PR00219
57 76 20 1.7E-9
IPR001388
ProSitePatterns
PS00417
70 89 20 -
IPR001388
PRINTS
PR00219
77 96 20 1.7E-9
IPR001388

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016021
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Subterm of
GO:0016192
Biological process Vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0276400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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