Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi6g1v0276700
Transcript ID	LotjaGi6g1v0276700.6
Related isoforms 6	LotjaGi6g1v0276700.1 LotjaGi6g1v0276700.2 LotjaGi6g1v0276700.3 LotjaGi6g1v0276700.4 LotjaGi6g1v0276700.5 LotjaGi6g1v0276700.7
Lotus japonicus genome version	Gifu v1.2
Description	Protein FAR1-RELATED SEQUENCE 6; TAIR: AT1G52520.1 FAR1-related sequence 6; Swiss-Prot: sp\|Q9SSQ4\|FRS6_ARATH Protein FAR1-RELATED SEQUENCE 6; TrEMBL-Plants: tr\|A0A151T6B6\|A0A151T6B6_CAJCA Protein FAR1-RELATED SEQUENCE 6; Found in the gene: LotjaGi6g1v0276700
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr6:59373259..59376600) extracted from Lotus japonicus Gifu genome v1.2.

ATTCCATTCGTAAAGTCCCATGATTTTATGATTTGAGAAGGGTTGAGCGATGCGAATCGCAGGTAAAATCCTTATCTTGT GAAATCAAAGTAAAATCCCGGTTCTAACTTCAAAGCATAAATTGAATTGGAATCGGGATTCTAAGGATTTCACGAACGGA TAAAAATGCCAAATTCACAACTAGTTCTGGTGTTCAATTTCTATCAATTCTATGCCAAATTATACAACGGGTTTGTAATT CCTTATGATTATTACATGGAAAATTTGTTAGACTAGACATGAGATTCTAGAATTATAATAATACTATATACTATCTAGTT CTGGTGTTCAATTTCTATCAATTCTATGCCTTGCAAGTTGCAACTTGTCGAAAGACGGAAACTTGATCTTTGGTGTTCCT AGTTGTTAAGTTTTGACTACTTGATGACTTATGAATGACATTCTTATGGAATCTGGATTATGTTGTATGAGTGCAAGCTT ATTTAAGTGTTTTTAGTGATCTGAAGTTTTTTCCTTATTTATGCTATTTTATATGTACAAATATGAATTTACGCACACAC ACATATAGATAGATAGATATGTATATCAGTATATAAATTTATGAATTTTGTAAAATTTCACAATTCAATTTATGATTCTA CCATTTACGATTTTCACTCCCCTTCCTTGTTCAAGGTAAAATTCCAATTTTAGCGACCTTGATTTGGATGGTTATTGTAC ATTGTTAGACATCATATAAATCATCTTTCAGGGTACAGTGACACTTTGAGTTACGGATGCGTGCCGTCTGAATTAGGTAT GTTATCATTTTCTATCACTTACAGTATATATTTATCTATTTTGGTAGATCAGGAGGTGCAATAGCTGAGCTAGTGGAAGC TTGAACCTCTAATATCATCATTACACACCAAGCTTAGCGAGGGGCTAGTGCCAGTTGAGCTAAGTATTCTGGCTAGAAGA GTGGTCTCTTAATGATGCCCCAAAAGCTTCTTGCTTGATCTACTATCTCATGGTCAAACTGGGTTCCATTCAGCAAACAA CATTTGGAGAGGTTAAACACCTGATATATGATTGAAAATTATATTTGTGGCTTTGTATGTCAAAGAATCTAGTATTCAAA TGTTGTTCCATTAGAGGTAGCTTAATGATTTTGTTTTACAATATGCTAGATGGAAGAGACCTCTCTCTGCTGTGAAGATT TGCCACATGGGGAATGTATTGAGGTTCATAAAGATGAAGATGCTGCACTAATTGAATTAGATTCTCAAAATGGGTTTTCT GAAGGAAGAAAGGAATTTGATGCACCTGCTGTTGGAATGGAGTTTGAGTCATATGATGATGCTTACAATTATTATATCTG CTATGCCAAGGAGGTGGGTTTTTGTGTAAGGGTTAAGAATTCATGGTTCAAACGAAATAGCAGAGAAAAATACGGTGCTG TGCTTTGCTGTAGCAGCCAGGGTTTCAAAAGAACAAAAGATGTTAACCATTTGAGAAAAGAGACAAGAACTGGATGTCCT GCAATGATGAGGATTAGGATAGCGGAGTCTCAGAGATGGCGGATAATTGAGGTCATACTTGAACATAACCACATTTTAGG TGCTAAGATACACAAATCAGCTAAGAAGATGGGAAATGGAACTAAAAGGAAGTCATTGCCTAGTTCTGATTCTGAGGTGC AAACAGTTAAGTTATACCGTCCACTTGTGATAGATGCAGGAGGTAATGGTAATTTAAACCCAAGTGCAAGAGATGACCGA ACTTTCTCTGAAATGTCTAATAAGTTGAACGTTAAAAGGGGTGACACACAGGCCATTTATAATTTCCTTTGCCGCATGCA ATTGACTAATCCAAATTTCTTTTATTTGATGGATTTCGATGATGAAGGGCATTTGAGGAATGCATTCTGGGCTGATGCTA GATCCAGGGCTGCATGTGGTTATTTTGGAGATGTTATATATTTTGACAATACTTATTTGTCAAGCAAATATGAAATCCCT CTTGTGGTTTTTGTTGGAATAAATCACCATGGTCAATCAGTGTTATTAGGCTGTGGTCTACTTGCAGGTGAAACAACAGA GTCTTATATATGGTTGTTTAGAACATGGGTTACATGTATGTCTGGATGTTCTCCCCAAACTATTATTACAGACAGGTGCG AGGCTTTGCAGAGTGCAATCATAGAGGTCTTTCCTAAATCTCATCATTGTTTTGGCTTGTCATTAATTATGAAAAAAGTA CCAGAAAAATTGGGAGGGTTGCACAATTATGATGGTATCAGGAAAGCACTTATTAAAGCAGTTTATGAGACATTGAAAAT CAGTGAATTTGAAGCAGCATGGGGAATTATGATTCAACGTTTTGGAGTTAGTGATCATGAGTGGCTTCGTTCTCTATATG AAGATCGAGTTCGTTGGGCACCCGTATTTTTGAAGGATGTATTTTTTGGTGGAATGTCTGCAGCACGCCCTGGTGAGAGC ATTGGTCCATTTTTTGGTAGATATGTGCACAAACAGACTCCTTTGAAGGAGTTTCTTGATAAGTATGAATTAGCTCTGCA CAAGAAGCACAAGGAAGAATCTTTGGCAGATACTGAATCAAGAAACTCAAGCCCTGTGCTGAAAACTAGATGTTCTTTAG AGTTGCAGCTCTCCAGAATGTACACAAGAGAAATATTCATGAAGTTCCAATTTGAAGTGGAAGAAATGTTTTCTTGTTTT GGCACAACACAATTACATGTGGATGGTCCCATCGTAATTTACTTGGTCAAGGAGCGCGTTTTGATCGATGGAAACAGACG GGAGATTAAGGATTTCGAAGTTGTGTACAGTAGGGCAGCAGGTGAACTTCGTTGCATCTGCAGTTGCTTTAACTTCTATG GATATTTATGTCGGCACGCGCTGTGTGTGCTCAATTTTAATGGGGTGGAAGAGATACCTTTCAAGTACATTCTTTCACGG TGGAAGAAAGATTACAAGCGCCTTCATGTTCCTGATCATAGTTCTGTTAGCGCTGATGATACTGACCCTATTCAATGGTC TAATCAGTTATTTAGTAGTGCCCTACAAGTTGTCGAGGAAGGCACAATTTCTCTGGATCATTACAATGTAGCGCTGCAGG CCTGTGAAGAATCACTGAGTAAGGTTCATGATGTAGACCAGAGACAGGACTAATGTACTGTAAAGGTTACAGTTGATGTA TGGTACTTTGTGTATTTCTAGTTGCTTTAGCTTAGCGCTGTTTAACTTTGATCCTCTTACATTGTTGAGATTTTCAAGAT TCTTGACTTTTGACAATGAAATTGTAAAGAATTTTGAAGTGCTTGTTTGTTTTAACTTCGTT

Download Genomic Sequence

CDS sequence (LotjaGi6g1v0276700.6) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTCAAACTGGGTTCCATTCAGCAAACAACATTTGGAGAGATGGAAGAGACCTCTCTCTGCTGTGAAGATTTGCCACA TGGGGAATGTATTGAGGTTCATAAAGATGAAGATGCTGCACTAATTGAATTAGATTCTCAAAATGGGTTTTCTGAAGGAA GAAAGGAATTTGATGCACCTGCTGTTGGAATGGAGTTTGAGTCATATGATGATGCTTACAATTATTATATCTGCTATGCC AAGGAGGTGGGTTTTTGTGTAAGGGTTAAGAATTCATGGTTCAAACGAAATAGCAGAGAAAAATACGGTGCTGTGCTTTG CTGTAGCAGCCAGGGTTTCAAAAGAACAAAAGATGTTAACCATTTGAGAAAAGAGACAAGAACTGGATGTCCTGCAATGA TGAGGATTAGGATAGCGGAGTCTCAGAGATGGCGGATAATTGAGGTCATACTTGAACATAACCACATTTTAGGTGCTAAG ATACACAAATCAGCTAAGAAGATGGGAAATGGAACTAAAAGGAAGTCATTGCCTAGTTCTGATTCTGAGGTGCAAACAGT TAAGTTATACCGTCCACTTGTGATAGATGCAGGAGGTAATGGTAATTTAAACCCAAGTGCAAGAGATGACCGAACTTTCT CTGAAATGTCTAATAAGTTGAACGTTAAAAGGGGTGACACACAGGCCATTTATAATTTCCTTTGCCGCATGCAATTGACT AATCCAAATTTCTTTTATTTGATGGATTTCGATGATGAAGGGCATTTGAGGAATGCATTCTGGGCTGATGCTAGATCCAG GGCTGCATGTGGTTATTTTGGAGATGTTATATATTTTGACAATACTTATTTGTCAAGCAAATATGAAATCCCTCTTGTGG TTTTTGTTGGAATAAATCACCATGGTCAATCAGTGTTATTAGGCTGTGGTCTACTTGCAGGTGAAACAACAGAGTCTTAT ATATGGTTGTTTAGAACATGGGTTACATGTATGTCTGGATGTTCTCCCCAAACTATTATTACAGACAGGTGCGAGGCTTT GCAGAGTGCAATCATAGAGGTCTTTCCTAAATCTCATCATTGTTTTGGCTTGTCATTAATTATGAAAAAAGTACCAGAAA AATTGGGAGGGTTGCACAATTATGATGGTATCAGGAAAGCACTTATTAAAGCAGTTTATGAGACATTGAAAATCAGTGAA TTTGAAGCAGCATGGGGAATTATGATTCAACGTTTTGGAGTTAGTGATCATGAGTGGCTTCGTTCTCTATATGAAGATCG AGTTCGTTGGGCACCCGTATTTTTGAAGGATGTATTTTTTGGTGGAATGTCTGCAGCACGCCCTGGTGAGAGCATTGGTC CATTTTTTGGTAGATATGTGCACAAACAGACTCCTTTGAAGGAGTTTCTTGATAAGTATGAATTAGCTCTGCACAAGAAG CACAAGGAAGAATCTTTGGCAGATACTGAATCAAGAAACTCAAGCCCTGTGCTGAAAACTAGATGTTCTTTAGAGTTGCA GCTCTCCAGAATGTACACAAGAGAAATATTCATGAAGTTCCAATTTGAAGTGGAAGAAATGTTTTCTTGTTTTGGCACAA CACAATTACATGTGGATGGTCCCATCGTAATTTACTTGGTCAAGGAGCGCGTTTTGATCGATGGAAACAGACGGGAGATT AAGGATTTCGAAGTTGTGTACAGTAGGGCAGCAGGTGAACTTCGTTGCATCTGCAGTTGCTTTAACTTCTATGGATATTT ATGTCGGCACGCGCTGTGTGTGCTCAATTTTAATGGGGTGGAAGAGATACCTTTCAAGTACATTCTTTCACGGTGGAAGA AAGATTACAAGCGCCTTCATGTTCCTGATCATAGTTCTGTTAGCGCTGATGATACTGACCCTATTCAATGGTCTAATCAG TTATTTAGTAGTGCCCTACAAGTTGTCGAGGAAGGCACAATTTCTCTGGATCATTACAATGTAGCGCTGCAGGCCTGTGA AGAATCACTGAGTAAGGTTCATGATGTAGACCAGAGACAGGACTAA

Download CDS Sequence

Protein sequence (LotjaGi6g1v0276700.6) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVKLGSIQQTTFGEMEETSLCCEDLPHGECIEVHKDEDAALIELDSQNGFSEGRKEFDAPAVGMEFESYDDAYNYYICYA KEVGFCVRVKNSWFKRNSREKYGAVLCCSSQGFKRTKDVNHLRKETRTGCPAMMRIRIAESQRWRIIEVILEHNHILGAK IHKSAKKMGNGTKRKSLPSSDSEVQTVKLYRPLVIDAGGNGNLNPSARDDRTFSEMSNKLNVKRGDTQAIYNFLCRMQLT NPNFFYLMDFDDEGHLRNAFWADARSRAACGYFGDVIYFDNTYLSSKYEIPLVVFVGINHHGQSVLLGCGLLAGETTESY IWLFRTWVTCMSGCSPQTIITDRCEALQSAIIEVFPKSHHCFGLSLIMKKVPEKLGGLHNYDGIRKALIKAVYETLKISE FEAAWGIMIQRFGVSDHEWLRSLYEDRVRWAPVFLKDVFFGGMSAARPGESIGPFFGRYVHKQTPLKEFLDKYELALHKK HKEESLADTESRNSSPVLKTRCSLELQLSRMYTREIFMKFQFEVEEMFSCFGTTQLHVDGPIVIYLVKERVLIDGNRREI KDFEVVYSRAAGELRCICSCFNFYGYLCRHALCVLNFNGVEEIPFKYILSRWKKDYKRLHVPDHSSVSADDTDPIQWSNQ LFSSALQVVEEGTISLDHYNVALQACEESLSKVHDVDQRQD

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31669:SF10 View details on PTHR31669:SF10 Search for proteins/transripts with this domain View external data on PTHR31669:SF10	50	680	631	1.4E-265	–
PANTHER	PTHR31669 View details on PTHR31669 Search for proteins/transripts with this domain View external data on PTHR31669	50	680	631	1.4E-265	IPR031052 Show description in modal box View details on IPR031052 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF03101 View details on PF03101 Search for proteins/transripts with this domain View external data on PF03101	74	157	84	8.0E-22	IPR004330 Show description in modal box View details on IPR004330 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF10551 View details on PF10551 Search for proteins/transripts with this domain View external data on PF10551	276	369	94	2.4E-28	IPR018289 Show description in modal box View details on IPR018289 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF04434 View details on PF04434 Search for proteins/transripts with this domain View external data on PF04434	551	595	45	2.0E-4	IPR007527 Show description in modal box View details on IPR007527 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50966 View details on PS50966 Search for proteins/transripts with this domain View external data on PS50966	563	599	37	9.606	IPR007527 Show description in modal box View details on IPR007527 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM00575 View details on SM00575 Search for proteins/transripts with this domain View external data on SM00575	574	601	28	3.0E-6	IPR006564 Show description in modal box View details on IPR006564 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0006355 View details of GO:0006355 AmiGO InterPro QuickGO	Biological process	Regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.	Subterm of View details of GO:0010468 View details of GO:1903506 View details of GO:2000112 Regulates View details of GO:0006351
GO:0008270 View details of GO:0008270 AmiGO InterPro QuickGO	Molecular function	Zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.	Subterm of View details of GO:0046914

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0276700.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi6g1v0276700.6