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LotjaGi6g1v0279400.1

Overview

Field Value
Gene ID LotjaGi6g1v0279400
Transcript ID LotjaGi6g1v0279400.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Myb-like transcription factor family protein; TAIR: AT2G01060.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q9SJW0|PHL7_ARATH Myb family transcription factor PHL7; TrEMBL-Plants: tr|I3SAF9|I3SAF9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0279400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:59614627..59620411) extracted from Lotus japonicus Gifu genome v1.2.

CTTGTCAAAAGTTTGATATTTTTATTAATTAATCAATGTCTTTAAGTCACTAACTACCAAGACTCATAGCTAAATTACTC CATAAAAAATATAATTATCTTTATATAATTAATTAGGTTTGAAAGTTTTTAATTTATCAATGCTTTTAAAATGTGTTTTT ATTGTTCCGAGTGATAGCTCAAGTAGTAAGAACTAGTGGACGTATGGGTTGAGGTTGGGGAAGTCCAGGGAATCAATCAT TGAAGAAAGTAATTTATCTTTCTGATGTAAAAAAAATGTGTTTTTATTTGTCAAATTAATTTTAAAATTTAAAGGGTTTT TTTTTCTTTTTCTAAAGCATAATTATACAAATGAGGTGAATGTCATGATGTACAACCCTCCTGATAAGGGGTCCAAAAAC TAGCAACGTCGGAAACAACCCAACCTAAGAAGAAAGAACAACAAACCAAAAAAGGATCGAGAAAAAAGCCAAAAACGCCC AAAGCTTATAGACAAAACCCCGAGGCAAAAACCAACCACCCTCTAAGACCCCGAAAAACCAAAGGAACACCCAAACCCCA AACTTTCCTAAGGAGAACTGCGTGCATTGATCTGATCAGCAACCTGAAAGAGGGCAACATCATCGGTGTAGTCGTAAACC ATGCCTAAATGTTTCCCCATCAGGATAACACTTCTTGCCCTATAGCTAGAACACCACACAACTCCGACAACTCCACCGGC AACAACATCAACTCTCTCCCGGCTGGCTTCGCATCACCGACTACCATTGTCTCAACTCTCTAGTCTCGCTTCATGGCCTT TTTTTTAATTTCCACCTTTAACAGCTATTTTGGGCTTACATCTAGTTCTAGAGGTTTTCACGGCAAAGGAAGGAGAGGCA ATAAGCCCCTCTCTACACACCCAGAATCATGAAAGATCCCCAAAACAAACTTGATAGATTTTATTCCTTTTCATACACCA ACCATACATCATTTTTAGAAGTTAAAATTGGTAGATGATTTATTATCATACCCTAGTTCTATGTTTTGGACCCATGATTA GTCTTATAACTTTTGGTTATATAGTTATATATTGGTTAAAAAAATGTAGCAACACAAAAATTAAAAAAAGAATATTAATT TTATTTGAGGGCATCACTGTATAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCAGAGCAGTGCACAGC TCCGAAATAGGAGGGGCCGAAAATTTGTATGTGTTCGTTGGATGTCGTAGATCTGGGTACGTGTTTCTCTTCTCCTTTCT TCTTCTTCTCAATTTTCAGTTTTCAAGCACTCTCTCTATTCCTCTGCTTCTCTCTTTCTCCCTCCCTCTCTAGCTTGTGC TTTTGTTTTGTTTTCTTTCCCTTTCCCTTCTTCTTTTGAATTTTTGGCGACCCTTTTGGTTTCTTTCATTTCATCTTCAG CTCAATGATGCTTTTAACTCTGCCTTAGCCTCAAGTTTGTGTTTTTAGGATTTTACTTCAACTTTTCTGCTTACCCCATA TAGAAAGTTTCATGCTTTGTTCTGGAACATGGGGCATTATTCTGAAAGATGTAAAGTTTTTAAATTCTGTGGTCACTGGA GGGTTTTTGTGTTGTGGGTCTAGAACCCCAAGTGCTACTACTAGTTTATTTTTTTTCTTTTTTATGTTAAGTGGTTGGTT TATTACAATTATTTCATTGTTTGAAGGATTGAAGCATAAATTGAGGGTGTTACCTGATGTTAGGCATTAATGTTATGAAA AAAAATTCAACTTCTAACACTGTTTCTTAATTTGACCATGTCACTTGTTCCATCAGGCGAATGAGTCTTTGTGAAATTGT GATTACTAAGTACAAGGGAAAATCAACCAAATTTGGGGCTACTTTGCTAGGGAAAGGGTGATTTGCGTAAATTGTTTCGG CTTCTTTTTTCGTGTATTCTCCATTTCTAGCAATATTAGTATGTATTCTGCAATAGTACAAATGGTTATTTAGTCATTGC AGAAGTTGAATAGTATTTGCGGGGGGCTGTTATAGATTCTTTGCTACTGTGTAGGGAAATATTCGAGTCCAAAATTCTTG CTGGTACTTGCTAGTCCTTGATCATGTGTTTGGATATGAAATTCAATTCAACTTTCTATGGCACTGCATTAAAGTTAAGT TATGTCTTCGTCGAGTCCTATTTGCAGAAAATTGTAAAGTACTTCAAAAGGACCTTATTGTAATAGGCCTTAGGTCTTAG GTCTTTGGAAGCTAAATGCCATTCCGTAAAGTTTCTGTACCCGAGTGCTCCCAAATATTGCGATTATTAAACAAAAATGT AAAAAAAGTTTGTTGAGGTTTGTATTGAGAGTACCAAATGGAAATGTTGTTAATGGTAATCTGGAAAGTTGATCAAGGGA GACCTGTATAGTGTACATGTTTGATCAAAATTTGAGTTGAACCAACGTGGATTAGGAGTTGGAATCAAAATATGCTAATT TTCTAATTCTTAAATAACTGTAGCAGTTTTGGAACTAGGAAAGTTCAAGGAAATTGCCCTTAAATGTATTCTTATCTCAA CGAACCTATATGTTCATGTGTATTGTCCTTGTGTATGGTTATTCCCGCATTTCTTCATCAACCTCTTCTAATATGCAGTT AGGTTCGAGATGTTAGTAATAATTTCCATAATATATGATGTTCACTTTTATTTCGTTTTCTGTCAGATAATGACAAATGT ATCATCCAAAAATTCAAAATGTTCCTAGTTCAACTTTAATTGGAAGCAATTCATTAGTTCATGGTCAGCACATAGATTGT GGTGACAGCACAATGGATCCTGGCAATGGTGGAAACAGTCTTAGCAACAACTCTAATCTCACTTCAAAACAACGTTTGCG GTGGACACATGAACTACATGAACGCTTTGTCGATGCTGTGGCTCAACTTGGTGGGCCTGATCGTGAGTATTTCTTCCCCC TTACTTTTGTTAACTGCAAATATTTCTTCTTCTTCTCTCACCCCAACTAATTATTCAGTAAAATGAGAATGCTAGGTTGT TTAGAAGATAAAAGAAAAGAAGAGCGTGCCCTGTTCTCATCAATTGTACATTTCTTACAGATTTGTCAGCTTATAAATTT TAAATCACTTGGAAAATTTTAATTATTTGCAATCTCTCTCTCTCTCTCTCTCTCTTCAGTGTATGTGCATGGGTCCTTAT TTTCATGCAAAATTGTATCAGTTGCACGTTAGCTAATACTTATGTCTCGACTATATGTGATGTTGTATGAAGAAATTATC AAGCTTTTACACATGATTCCAAGACTTAGCATAAAAGTGTTTCAACTTTCAATCTCTATCCTTTTGCCTAGGTGCCACAC CCAAAGGTGTCCTCAGAGTTATGGGTGTACAAGGCTTAACCATTTATCATGTCAAAAGTCACTTACAGGTAATCTGAAAT TTAGGGCCTCTTAACTTGAAGTCCATTATTCTCTCATTCATTAGTATTTATTCATTCTACTTTTCTGTTTCATCCAGAAA TACCGACTAGCAAAATATCTGCCTGACTCCTCTTCTGATGGTATGTCTATCTGGTTTTCATTTTTTGAAATGTTTATATA ATATTTAGGGTTTATTGATTTCCAATAAACTTATTCAATTCACTTTGATTTGATCTGTTTGTTGATAACTTTTTAATTGT TCATAGAAGGAAAAAAAGCTGATAAGAAAGAAACAGGGGATATGCTTTCCAATCTAGATGGTTCATCGTGAGTATAGCTT CCCTTCTTGCATGCTGGTTTTTATTTTTATACAAGTTGATGGAAACTTATGATCAAAATATTTTATAGTTCTCTAGGCTT CAACCTTCTCATATGCTTTTAACATCCTCGAGTCATATTTACCCTAGTGTTAACAATATAGATTTTTTTGATGCGCTCAA TGCATCAAAACTGTTATTGAGAAAAAAAAGTTTTTTGTATCCAAAGATTGTTTGATGAGTTCTGGATATGAATAGTTTAA GTTACTTGTCGGCTTGTCTGTCTTCAGTGGGATGCAGATTACAGAAGCACTAAAGCTTCAAATGGAGGTCCAGAAGCGAC TACATGAACAATTGGAGGTACATTTTCCTTGTTGAACTGATCCAATGACTATATTGTACTAGCCGATTGTACTGTTTCTG ATTTCTATTACATTTAATCATGTGAGATTTTGAGATGAAACGATGATATTAATCTAAATTCAGTAAATTGGTATTATCAT AAAATCAATGCTAAAGTCTAGGTTTCATCATCCAAAGATGTATATCTTATGATGAGACTTAAATGGGTAATGTTGATACC AATTGAAAGTCTCAGTAATAACCTCTGCTTTAATAGCCCAAACCTTTGTTGCTTTGGAATTTCACTTGAATATACGTTGT ATACTTCAAAGATTTTCAAATGCAAGCTTTTAAATAAAGGGGGAAGAATATAGATTTGCATGAATGCATTTGCAGGGCCA TGTCAACATGATGTGTATCTGAAGAGTAGTAAATTAAACTAATTCTTACATAAGTTACGTGGTAGAAAGAAACTTTGTTT TAACAAGATGATGAGCACACTGGTCACTAAGCAATTGTTTTCCAATTTCTGAAAGTTGTATACTCTTGTCACAGAACCAT GACTGTAGAGGAATATTCATGACCTATCTAAATTCCTTTGACTTATGGCATTCCAAAAGAATTCCTATCTTGTTTATAAA TACAAATAAAACATGCATCATCTTTTATAGTTTCTCAATTTTGAATCAAGAAAAGTCAGAATCGACAGAATTGTGAATTG TAATTTCTATTGTGTTAATAGAACATGTATCCTCCTTTGTAGTTTCTCTCTTGTAATTACTTTTCAATGTGGAACAGGTG CAGAGGCAGCTACAATTAAGGATAGAAGCCCAGGGTAAATACTTGAAAAAGATAATTGAAGAGCAACAGCGGCTCAGCGG GGTTTTTTCAGAGGCACCTGCAGATGTGTGCCGAGAGCCTGATAACAAGACTGACCCTGCAACCCCAGACCCAGAAAAAG CTGCCAAACAACATGCTCCGGCGAAGAGTCTTTCAATTGAATCTTTTTCATCTCACCATGAACCAATGACACCAGATTCC GCTTGCCATGTCGGTTCCCCTGCTGACAGCCCGAAAGAGGAGAGATCAGCGAAGAAGCAACGAGTAAGCATGGATGGAGC ATATTCTAAACCAGACATTGTGCTTCCACATCAGATACTCGAGTCAAGCATGCCATCATACCAGCAACCAACCACTGTTT TCCTTACTCAAGAGCACTTTGATTCTTCTTTGGGTATATCTACCAGAAGTGAGGAATTGGAGAAGATTGGTGGTAGCAAT CTGTGATTTGGTGTGATGTGTAGGTTATGCACTAGGACTGATTCTATCTTCCTTTTAGTTTGTGCTATATGTATTTCTTA GTAGATGAAGGAACCTGCTCTTCATAGATTATTCCCAAGGTTTTTAGTTTTCAGTTCAATACTTGACTTAAACATTGAGC TTCTTATTACTTTTAGAGAACTTATTTTAATTGGGTTAATAGAAAGCATCTTTTCATCTGTTCGTTTTCTGAGCTGAGTT TTGTGGTGATGGTGCCACCTGTGGAATGGGATTGTGTAAGTTATTAGGAATCACATGTTCTTGGACTCTAGTAACATAAC ATTTCCTTCAGACTATATCAAAGGTGAAATATTTGCATAAATTACAATGGCAATGTGAATACAAGCATTTATGCCACTTG CTTCAATTTGAGTTTGTCACATCAT
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0279400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTATCATCCAAAAATTCAAAATGTTCCTAGTTCAACTTTAATTGGAAGCAATTCATTAGTTCATGGTCAGCACATAGA TTGTGGTGACAGCACAATGGATCCTGGCAATGGTGGAAACAGTCTTAGCAACAACTCTAATCTCACTTCAAAACAACGTT TGCGGTGGACACATGAACTACATGAACGCTTTGTCGATGCTGTGGCTCAACTTGGTGGGCCTGATCGTGCCACACCCAAA GGTGTCCTCAGAGTTATGGGTGTACAAGGCTTAACCATTTATCATGTCAAAAGTCACTTACAGAAATACCGACTAGCAAA ATATCTGCCTGACTCCTCTTCTGATGAAGGAAAAAAAGCTGATAAGAAAGAAACAGGGGATATGCTTTCCAATCTAGATG GTTCATCTGGGATGCAGATTACAGAAGCACTAAAGCTTCAAATGGAGGTCCAGAAGCGACTACATGAACAATTGGAGGTG CAGAGGCAGCTACAATTAAGGATAGAAGCCCAGGGTAAATACTTGAAAAAGATAATTGAAGAGCAACAGCGGCTCAGCGG GGTTTTTTCAGAGGCACCTGCAGATGTGTGCCGAGAGCCTGATAACAAGACTGACCCTGCAACCCCAGACCCAGAAAAAG CTGCCAAACAACATGCTCCGGCGAAGAGTCTTTCAATTGAATCTTTTTCATCTCACCATGAACCAATGACACCAGATTCC GCTTGCCATGTCGGTTCCCCTGCTGACAGCCCGAAAGAGGAGAGATCAGCGAAGAAGCAACGAGTAAGCATGGATGGAGC ATATTCTAAACCAGACATTGTGCTTCCACATCAGATACTCGAGTCAAGCATGCCATCATACCAGCAACCAACCACTGTTT TCCTTACTCAAGAGCACTTTGATTCTTCTTTGGGTATATCTACCAGAAGTGAGGAATTGGAGAAGATTGGTGGTAGCAAT CTGTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0279400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MYHPKIQNVPSSTLIGSNSLVHGQHIDCGDSTMDPGNGGNSLSNNSNLTSKQRLRWTHELHERFVDAVAQLGGPDRATPK GVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDEGKKADKKETGDMLSNLDGSSGMQITEALKLQMEVQKRLHEQLEV QRQLQLRIEAQGKYLKKIIEEQQRLSGVFSEAPADVCREPDNKTDPATPDPEKAAKQHAPAKSLSIESFSSHHEPMTPDS ACHVGSPADSPKEERSAKKQRVSMDGAYSKPDIVLPHQILESSMPSYQQPTTVFLTQEHFDSSLGISTRSEELEKIGGSN L
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31314:SF68
1 282 282 1.8E-124 –
PANTHER
PTHR31314
1 282 282 1.8E-124 –
ProSiteProfiles
PS51294
48 108 61 14.134
IPR017930
Gene3D
G3DSA:1.10.10.60
48 108 61 1.5E-27 –
SUPERFAMILY
SSF46689
49 105 57 7.53E-18
IPR009057
TIGRFAM
TIGR01557
51 106 56 1.2E-25
IPR006447
Pfam
PF00249
54 104 51 1.8E-8
IPR001005
MobiDBLite
mobidb-lite
110 128 19 - –
MobiDBLite
mobidb-lite
110 134 25 - –
Pfam
PF14379
138 184 47 4.4E-23
IPR025756
Coils
Coil
141 161 21 - –
MobiDBLite
mobidb-lite
190 270 81 - –
MobiDBLite
mobidb-lite
196 217 22 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0279400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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