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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0279400 |
| Transcript ID | LotjaGi6g1v0279400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb-like transcription factor family protein; TAIR: AT2G01060.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q9SJW0|PHL7_ARATH Myb family transcription factor PHL7; TrEMBL-Plants: tr|I3SAF9|I3SAF9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0279400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:59615046..59617695) extracted from Lotus japonicus Gifu genome v1.2.
ATGTATCATCCAAAAATTCAAAATGTTCCTAGTTCAACTTTAATTGGAAGCAATTCATTAGTTCATGGTCAGCACATAGA TTGTGGTGACAGCACAATGGATCCTGGCAATGGTGGAAACAGTCTTAGCAACAACTCTAATCTCACTTCAAAACAACGTT TGCGGTGGACACATGAACTACATGAACGCTTTGTCGATGCTGTGGCTCAACTTGGTGGGCCTGATCGTGAGTATTTCTTC CCCCTTACTTTTGTTAACTGCAAATATTTCTTCTTCTTCTCTCACCCCAACTAATTATTCAGTAAAATGAGAATGCTAGG TTGTTTAGAAGATAAAAGAAAAGAAGAGCGTGCCCTGTTCTCATCAATTGTACATTTCTTACAGATTTGTCAGCTTATAA ATTTTAAATCACTTGGAAAATTTTAATTATTTGCAATCTCTCTCTCTCTCTCTCTCTCTTCAGTGTATGTGCATGGGTCC TTATTTTCATGCAAAATTGTATCAGTTGCACGTTAGCTAATACTTATGTCTCGACTATATGTGATGTTGTATGAAGAAAT TATCAAGCTTTTACACATGATTCCAAGACTTAGCATAAAAGTGTTTCAACTTTCAATCTCTATCCTTTTGCCTAGGTGCC ACACCCAAAGGTGTCCTCAGAGTTATGGGTGTACAAGGCTTAACCATTTATCATGTCAAAAGTCACTTACAGGTAATCTG AAATTTAGGGCCTCTTAACTTGAAGTCCATTATTCTCTCATTCATTAGTATTTATTCATTCTACTTTTCTGTTTCATCCA GAAATACCGACTAGCAAAATATCTGCCTGACTCCTCTTCTGATGGTATGTCTATCTGGTTTTCATTTTTTGAAATGTTTA TATAATATTTAGGGTTTATTGATTTCCAATAAACTTATTCAATTCACTTTGATTTGATCTGTTTGTTGATAACTTTTTAA TTGTTCATAGAAGGAAAAAAAGCTGATAAGAAAGAAACAGGGGATATGCTTTCCAATCTAGATGGTTCATCGTGAGTATA GCTTCCCTTCTTGCATGCTGGTTTTTATTTTTATACAAGTTGATGGAAACTTATGATCAAAATATTTTATAGTTCTCTAG GCTTCAACCTTCTCATATGCTTTTAACATCCTCGAGTCATATTTACCCTAGTGTTAACAATATAGATTTTTTTGATGCGC TCAATGCATCAAAACTGTTATTGAGAAAAAAAAGTTTTTTGTATCCAAAGATTGTTTGATGAGTTCTGGATATGAATAGT TTAAGTTACTTGTCGGCTTGTCTGTCTTCAGTGGGATGCAGATTACAGAAGCACTAAAGCTTCAAATGGAGGTCCAGAAG CGACTACATGAACAATTGGAGGTACATTTTCCTTGTTGAACTGATCCAATGACTATATTGTACTAGCCGATTGTACTGTT TCTGATTTCTATTACATTTAATCATGTGAGATTTTGAGATGAAACGATGATATTAATCTAAATTCAGTAAATTGGTATTA TCATAAAATCAATGCTAAAGTCTAGGTTTCATCATCCAAAGATGTATATCTTATGATGAGACTTAAATGGGTAATGTTGA TACCAATTGAAAGTCTCAGTAATAACCTCTGCTTTAATAGCCCAAACCTTTGTTGCTTTGGAATTTCACTTGAATATACG TTGTATACTTCAAAGATTTTCAAATGCAAGCTTTTAAATAAAGGGGGAAGAATATAGATTTGCATGAATGCATTTGCAGG GCCATGTCAACATGATGTGTATCTGAAGAGTAGTAAATTAAACTAATTCTTACATAAGTTACGTGGTAGAAAGAAACTTT GTTTTAACAAGATGATGAGCACACTGGTCACTAAGCAATTGTTTTCCAATTTCTGAAAGTTGTATACTCTTGTCACAGAA CCATGACTGTAGAGGAATATTCATGACCTATCTAAATTCCTTTGACTTATGGCATTCCAAAAGAATTCCTATCTTGTTTA TAAATACAAATAAAACATGCATCATCTTTTATAGTTTCTCAATTTTGAATCAAGAAAAGTCAGAATCGACAGAATTGTGA ATTGTAATTTCTATTGTGTTAATAGAACATGTATCCTCCTTTGTAGTTTCTCTCTTGTAATTACTTTTCAATGTGGAACA GGTGCAGAGGCAGCTACAATTAAGGATAGAAGCCCAGGGTAAATACTTGAAAAAGATAATTGAAGAGCAACAGCGGCTCA GCGGGGTTTTTTCAGAGGCACCTGCAGATGTGTGCCGAGAGCCTGATAACAAGACTGACCCTGCAACCCCAGACCCAGAA AAAGCTGCCAAACAACATGCTCCGGCGAAGAGTCTTTCAATTGAATCTTTTTCATCTCACCATGAACCAATGACACCAGA TTCCGCTTGCCATGTCGGTTCCCCTGCTGACAGCCCGAAAGAGGAGAGATCAGCGAAGAAGCAACGAGTAAGCATGGATG GAGCATATTCTAAACCAGACATTGTGCTTCCACATCAGATACTCGAGTCAAGCATGCCATCATACCAGCAACCAACCACT GTTTTCCTTACTCAAGAGCACTTTGATTCTTCTTTGGGTATATCTACCAGAAGTGAGGAATTGGAGAAGATTGGTGGTAG CAATCTGTGA
CDS sequence (LotjaGi6g1v0279400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATCATCCAAAAATTCAAAATGTTCCTAGTTCAACTTTAATTGGAAGCAATTCATTAGTTCATGGTCAGCACATAGA TTGTGGTGACAGCACAATGGATCCTGGCAATGGTGGAAACAGTCTTAGCAACAACTCTAATCTCACTTCAAAACAACGTT TGCGGTGGACACATGAACTACATGAACGCTTTGTCGATGCTGTGGCTCAACTTGGTGGGCCTGATCGTGCCACACCCAAA GGTGTCCTCAGAGTTATGGGTGTACAAGGCTTAACCATTTATCATGTCAAAAGTCACTTACAGAAATACCGACTAGCAAA ATATCTGCCTGACTCCTCTTCTGATGAAGGAAAAAAAGCTGATAAGAAAGAAACAGGGGATATGCTTTCCAATCTAGATG GTTCATCTGGGATGCAGATTACAGAAGCACTAAAGCTTCAAATGGAGGTCCAGAAGCGACTACATGAACAATTGGAGGTG CAGAGGCAGCTACAATTAAGGATAGAAGCCCAGGGTAAATACTTGAAAAAGATAATTGAAGAGCAACAGCGGCTCAGCGG GGTTTTTTCAGAGGCACCTGCAGATGTGTGCCGAGAGCCTGATAACAAGACTGACCCTGCAACCCCAGACCCAGAAAAAG CTGCCAAACAACATGCTCCGGCGAAGAGTCTTTCAATTGAATCTTTTTCATCTCACCATGAACCAATGACACCAGATTCC GCTTGCCATGTCGGTTCCCCTGCTGACAGCCCGAAAGAGGAGAGATCAGCGAAGAAGCAACGAGTAAGCATGGATGGAGC ATATTCTAAACCAGACATTGTGCTTCCACATCAGATACTCGAGTCAAGCATGCCATCATACCAGCAACCAACCACTGTTT TCCTTACTCAAGAGCACTTTGATTCTTCTTTGGGTATATCTACCAGAAGTGAGGAATTGGAGAAGATTGGTGGTAGCAAT CTGTGA
Protein sequence (LotjaGi6g1v0279400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYHPKIQNVPSSTLIGSNSLVHGQHIDCGDSTMDPGNGGNSLSNNSNLTSKQRLRWTHELHERFVDAVAQLGGPDRATPK GVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDEGKKADKKETGDMLSNLDGSSGMQITEALKLQMEVQKRLHEQLEV QRQLQLRIEAQGKYLKKIIEEQQRLSGVFSEAPADVCREPDNKTDPATPDPEKAAKQHAPAKSLSIESFSSHHEPMTPDS ACHVGSPADSPKEERSAKKQRVSMDGAYSKPDIVLPHQILESSMPSYQQPTTVFLTQEHFDSSLGISTRSEELEKIGGSN L
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 282 | 282 | 1.8E-124 | – | |
| PANTHER | 1 | 282 | 282 | 1.8E-124 | – | |
| ProSiteProfiles | 48 | 108 | 61 | 14.134 | ||
| Gene3D | 48 | 108 | 61 | 1.5E-27 | – | |
| SUPERFAMILY | 49 | 105 | 57 | 7.53E-18 | ||
| TIGRFAM | 51 | 106 | 56 | 1.2E-25 | ||
| Pfam | 54 | 104 | 51 | 1.8E-8 | ||
| MobiDBLite | 110 | 128 | 19 | - | – | |
| MobiDBLite | 110 | 134 | 25 | - | – | |
| Pfam | 138 | 184 | 47 | 4.4E-23 | ||
| Coils | 141 | 161 | 21 | - | – | |
| MobiDBLite | 190 | 270 | 81 | - | – | |
| MobiDBLite | 196 | 217 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi6g1v0279400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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