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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0287300 |
| Transcript ID | LotjaGi6g1v0287300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription initiation factor IIF subunit alpha; TAIR: AT4G12610.2 transcription initiation factor IIF subunit alpha RAP74; Swiss-Prot: sp|Q9SU25|T2FA_ARATH Transcription initiation factor IIF subunit alpha; TrEMBL-Plants: tr|A0A151T6L6|A0A151T6L6_CAJCA Transcription initiation factor IIF subunit alpha; Found in the gene: LotjaGi6g1v0287300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:60478085..60484587) extracted from Lotus japonicus Gifu genome v1.2.
TTTGTTTCTACTTCTCTTCTCTTATCATCTATCACATCTCATACTTTCTTTCTCTTACTTTTTCTTTTTTTTTCTATCTC TCTCCTCCTCCACCTTCTTCTACTTTAAAATGAGGTGTGAAGAAAACATTTTCCCCAAAGAGTGCGTCACTCCATTATTG ATTCATTCCAATCCAAATTCCAATTAAGGCCTCCCTCCGCGACTGCAAATTTCTTCCCGATTCGAACATTGCGTTGGACT ACGGCGCTCACAATTTCAACGCCGAGCACAAAAAATTTCAACTGAAATCTAATCTCACGATCGGAACCCTAGAAATTCCG CGTGTTTCTTCGAACCGGTGAAGTTAATCCTGTGGTTTCGCGACACAGAGTAGAAGAAAGAACGGCGATGGATTTGCAAT TGAAGTCAAGCTGTAGCGGATGCGGTTCAACCGCCGATCTCTACGGCAGCAATTGCAAGCACATGACTCTCTGCTTGACC TGCGGCAAAACCATGGCGGAGAATCGCGCCAAATGCCGCGACTGTGGCGCCACCCTAAATCGCTTGATTCGAGTCCGAAT AATCATAATCTCATCACGTTTTTTCAATTTTCCATACTCTAAACCTGCTTGATCATGATTGTATTCGAATTTCCCCTTGT TTCAGGAATACAGTGTTCGTGCAAGTTCTCCCAGTGATAAACACTACTGTATCGGAAGATTCATGACTGGGTTGCCTGAT TTTTCAAGGAAGAAAAGTGCTGAAAACAAGTGGTCTCTGCAGAAGGATGGACTACAGGGTCGCCAAATTACTGATACTTT AAGGGTATTCAATTTCTTAACAAATCTATCTCTTGCATTGGTAGTTCGCGCAGTGTTGTCAAATCGCCATCGCGGTGAGC CAAAAATCCGCTATTTAGCGGGAATAGCCCGCTATAGCGGGCAATAGCGGCGTCGCAATTAGCCAAAAATCCGCTACGCT ATAGCGGCGCTATGGCCGCTATTTGATAACACTGAGTTCACGCGATGTTTTACAGCAATTTATGAAAAGTCCCTTGTAAA CTTATTCGTGTTTCCGGGGAAATTAAGTAAGGGAGCTTCTGAAAAGTTGAGAGGCATAAGCTTGTTTTAACTTACATCAA AAGTTTTGGTTTAAAAAGCTTATAGTTGAAATGTGTGATCATTCCAACTATTCTTTTCTTTAAGTGCTTATTGAGAAGTT TATCTAAACTGGCGGCTCGTGTGACTTTATTATGCTAATGAGTGTACGGAGCAGCATGTCAGTAGTAATTTCAAATTCAA CGTTTGAGTTGCCGAGTAGATGATTGTTATAGACGTTGAAAAGAGGTTGTGTTTGTCAGGAGGTGGATGATTACATGTGA AATTGTAATTGTTCATTTTATTTTTTCATTACAAAGGAGAAGTACAAGAACAAGCCTTGGGTCTTAGAGGACGAAACAGG TCAGTCCCAGTTCCAGGGTCATCTAGAAGGTTCACAATCAGCTACCTATTATCTTCTGATGAAAGAAAAGAAGGAGTTTG TTGCCATTCCTGCTGGTTCTTGGTATGCTTTTCATGCTCTAGAACGTGTTTTTCTATGAGAGGACTTCTCTATGATTTTT GCTTGTTTCTCTTCTCCTTTTTAATTTTTTATGTTTATACTGGTCAAAGACAGTATTCAGATGTGTTTTATGGAATGTTT CTTCATAGGTACAACTTTAACAAGGTTGCACAATATAAGCAATTGACTTTGGAGGAAGCGGAAGAGAAAATGAAAAATAG AAAGAAAACTGCTGATGGATATGAAAGATGGATGATGAAAGTGGCAAATAATGGGCCTGCTGCATTTGGTGAACATGGGA GGTTTGATGACAAGGAAAGCATTACAGGTGGAGGGAGAAGCCGTAAAAAAACTGGTGAGGATGATGAAGGTAATGTCTCT GATAAAGAAGATAGAGAAGAGGAGGATGACGAGGAGGAGGCAGAAAGGAAAAATAGATTTGGACAGAATAAGAAAGGAGG TGGTGATGACGATGATGATGAAGGTCCAAGGGGAGGGGACCTTGATGATGATGACTTTGATGTTGAGAAGGGTGAGTATC TTTCCTTGTTTGTTCATTATAGTTTCGGCATGTTTGCTTTGCAATTGGGTGTCATAATTCATCAGAATAGGCACATGCCA TTCAACATGGGAGGAAACTATTAATCTGCAGTATCCATTATTTATAAGTTGGAGTCCTTACAATGGCCATCTTTCTTGTT GTGGATCTGTTTACCTAGTGGAGGATATAGCTTACGAGAAAATAAAGAAATCAATTGGATTGCTTACTTGAACCAAATAT AGGGTTGATAATTCATATAGTTCAGGTTTTGAAGTATTTATTTTGGTGTTGGATGGAGCTGGTATTATAGAACTCATAGC TTGTCAATAGACTCAATACTAATAGCCACGCCCACAAATTTTCTGTCCTTATGTGATTTGGTGAAATTTTCAAATCATAA AAAATATAATTTAGCAGTTGCATCTTTCTTCAATGTGTCTAATCCAATTTAATTTCTTGTAATATGACTTTTGTGTTAAT AGTAATCATAAAAGAAAGGTAACAAAGAAGTTAAAAGGTTTTAAATATAATAAACAACATCTTGTTTGTAAGTTGACTGA CTTGACAGTCTGCTAACCAGTAAGTAATAGACATAGTCTGACAAGATTTAGTTATCTTGCGTTAGAAAAGCATCAATTTA CATGTTGTAGCAGGTATCTATCTTTCCCATGCACACCATGAAGCTGTTGATTATGAAATGTCAGTGTATAAACAATTCTC AAATTTGAATAAAAAAGCCAATTCTTGAATTAATGGGCAGGATAGCAGGGATAACCCATGACTTATGTCATCTGTGATCT GAGCAACACTGTTAATTTTATAGCATGATGAATTAGCTTGACTATAGACTATATAGTTGATTGGTCTAAATACTTGTATA GTCTTGTTGGAGTCCTTTCTCGGTGATAACATTCTGTTCTAGGGAACTTGACATGAGTTGAAACTTGAAAGCATTCTAGG ACATCAAAACATAAGCTAGTTATTTTATTCTTATTCAAAATTTGCAGAACACTTCAACAAGTTTGTGCTTATTCTTTCAT CTCGGTATACTTGTACATCTGTTACAGGTGATGATTGGGAACATGAAGAGATTTTCACTGATGATGATGAAGCCGTCGGC AACGATCCAGGGGAAAGGGAAGATTTGGCTCCTGAAGTCCCTGCTCCTCCTGAAATCAAGCAGGTTAGTTTCTACTCAAA TACTTGAGCTGTGACGTGGATATTGGATTCCTAATGGTGCTCTTATTAGTCAATACTCAATATGATGTCATTTCTGTGCC TCAGCTAATTGTACAATTCATGTTATTTATTTTTTATGGATTCACATAAGGTTGATAGGAAGTAGGAACTAATTTTATAT AATAGAAGGGAACAACTAGTAGCAACCTCAAGTACAGTGTTTAAATGGAAATACAGAAATAAGTAAGTATGCCAGAAAAT AAAAGACAGAAAATATTAGAGAAGCGTGAATGAGTTCTCAGCCCTATGGCTTCAGCCACCCCCTGATTACCCTATCATAC TTCCATCTCATCTTTCTCCTCTTTAATTGTCCCCCTTCTCCCCGTGCTTCCCACTCCCCCTTCTCCAACGTCTTGTTGCT CCTTGTCCATTTTTTCCCTCCCCTTTGTCTCCCAACAGACTTCATCACTTCACCAAACACCATTCTTCTCATATTTCTCA CATGTGGTCTGACATATGAGGGTCTAACATTGGATGTCAATGTTATTTAATTTATTTAGGCCTTTACTTTCCTCATTTCA GAATACCATGGTTTCCTTTTTACATGATGTTTGCTACGTTATATCCTTTCAACCATGTTTGTTTGGTTTTGTGATGGTCT CCTCTTTTTTTTATGTGAGTTTTGTTTCTTTTCAAGCTGTTTTTAGGAACTTAGCCATGACAGACATCCATGATGTATGG TATTATTTTGTACTTTCATCAGTTTCATGTATAATATAAAATGGAATAGATAAGGATATTCTCATATTTGGTTTCTATAT ATTGTGGATTACAGAACTCCATCGTGAATTATTCTTTACTTGCAATTGTAGGATGATGATGAGGAGGAGGAGGAGGATCG AGATAATGAAGAGGGGGGAGGTCTGAGTAAATCTGGGAAAGAGCTGAAGAAGCTGCTTGGGCGATCTGGTGGTATGGATG AATCAGATGCAGAGGATGAGGATGATGATGAAGACGATGTATGGTTTTTTTTTCTTGTTAATATTGTATTTTCATTAATT TTTTGTTTAGTTACTATAATTATTTATTGTTCTTCTGACACCTCTGATGAAATATGAGCATAACTTAGCCCAAACTGCAA TCGGTTTGTGGTTATCTACGGGTAACTTTTTTCATTTTCTGTGACTTCTCTAAAGAGGAAGTGGTTGATTAGTTTTGATT TCATTGAATATCTGTAAAAACTTGATTAATTTTTTAACTAGACTTCAACATTTTTCATCCATTATTGAATCATTTTTACT TGTCTAGATGGATGATGAGGATGGTGTTCCTCCTGTGACTGCTATAAAGCAGAAGGATGCACCTAAGGAAGAACCTGTTG ACAACAGCCCTTCAAAAACCATGGCAACAGGATCTGCTCGTGGAACACCTTCTTCTTCAAAGTCTTCTAAGGGGAAGAGA AAATCAAATGAGGAAGCAAAGCCATCCAATGGTGCAACACCAAAGAAGGTGAAGACAGAAAATGTAAGTCATTGCTATTT CTTTTGGGCTTGCTTGATTATGAGGCTCGTTTATCGTGATTTTTTGCTTTAGTTACCTGTTTATAAAACGTTATTTGCTT GGATTACTTTGAAAATTTAAAACTGAACAAACAATTAAGTTGGTCTTTTGTTTATTTTATAAAACTATATTATTGTTGGT TAGCTTTTTGTTCCACTAATCATCGCATCCCCTTGTATCCTTTGGTCTCTGACCTCTTTTTGATCTTTTATATATATATA TGTTTCCTTTTGCTCTCAAAAAAAAAATAAAACTATATTATTGTAAAAGCTGATACAGTGTAATCACAATATTTTTTGAA ATGATTTGGGACCAAAAAATGCTCGTAATTTAACTTGAAGCACTTTACAAATGATGCATCCTAACACCTTAATGGCTTTT GTTTATTGTATAAGAGATTTTCAAGAAGCTCTTATTGTCATAGAACTTCATTTTTTTCTGGCTTTTGTTACAAAAAGAAC TTGATCATTATTGAATAGGTTTACCCCATAACTGTTATTGAAATTCTTCATTATCTTACTGAACCAGGAATCAAAATCAT CTACCAAAGATGTAAGTGGGTCTGCTTCTAAAAGTAATCCACCTCCAAAAAGTACACCACAACCATCATCATCAAAAGCT GGGCCTTCTACCACAGCTTCTGGACCTGTTAGTGAGGAAGAAATTAGGGCTGTTTTGTCACAGAAGACCCCAGTGACCAC GCAGGATCTTGTAGCTAAATTTAAGGCAAGATTAAGATCTCCAGAGGTAAGCTCTACTTTTTCTTTAGCCTTGTTTAAAC AAGCTTGCTTTTTCTTTCCCTCCTCCCTCAGGCCGTAGGTTGATTCCTCATCAACAGTTATAGCATGTTTGGATCAACTT ATTTTCTCAGAATCACTTGTGCTATGTAGAAGCTCCTTACAGAAGCTTCTCCCCATAATTGATATTGACTTTAAAATCAA TTGTAGAAGGTTTTCCAAACATGCTACTAGTCAAATTTAGATATATGTTGAAGAGTATAAACTGGTCCAACTGTGACAGA TAGCCTCACCAGTTCAATTTCTTTATTTGCTTGAAACTGAACCTTGTACTTCTTCCCATGTGCAGGACAAGCAAGCATTT GCTGAGATCCTGAAGAGAATCTCTAAGATACAGAAGACTGCAAACGGGTCCAGTTATGTTATCCTGAGAGATAAGTGACA CTCTTCAAAATTTCCCAATGGTTGGTTGTGAGGGAAGATGCAACATCGAAAAGAATATCAGTTATTATACGTTGTATATT TTTCACATGTTGGGCACCATCTTGGAGATGCTATGACTAATTTTCTATTAGGATTAGTAAGCTAACGACCATTAAGTGCA CGACTATGACTTGTCGACTTTGGTATAACAATGCGTTGGAAAATTGATTTCAATGGGATGGACAAGGAGACTGTGTATAT AGTAATGCATTGAATAAAATGTGTATGCCAACGACATGGTAGATGTATAACATGCCACTTATTTTTAACAATGATGGAAA TGGATTTTGATTTTGTACACTTTTACAAATTATCTGAACACTATCGGTCGTTCAATTCTAGTGATATACATGAATAACAT GTATGCATGTTTATTATTATTTTCCATGTTATTACGCGAATTATTTGGTAACACTTATTCAAGTTTGATATATAAGATAT GGTCTAATATAATTAGATAATGT
CDS sequence (LotjaGi6g1v0287300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTTGCAATTGAAGTCAAGCTGTAGCGGATGCGGTTCAACCGCCGATCTCTACGGCAGCAATTGCAAGCACATGAC TCTCTGCTTGACCTGCGGCAAAACCATGGCGGAGAATCGCGCCAAATGCCGCGACTGTGGCGCCACCCTAAATCGCTTGA TTCGAGAATACAGTGTTCGTGCAAGTTCTCCCAGTGATAAACACTACTGTATCGGAAGATTCATGACTGGGTTGCCTGAT TTTTCAAGGAAGAAAAGTGCTGAAAACAAGTGGTCTCTGCAGAAGGATGGACTACAGGGTCGCCAAATTACTGATACTTT AAGGGAGAAGTACAAGAACAAGCCTTGGGTCTTAGAGGACGAAACAGGTCAGTCCCAGTTCCAGGGTCATCTAGAAGGTT CACAATCAGCTACCTATTATCTTCTGATGAAAGAAAAGAAGGAGTTTGTTGCCATTCCTGCTGGTTCTTGGTACAACTTT AACAAGGTTGCACAATATAAGCAATTGACTTTGGAGGAAGCGGAAGAGAAAATGAAAAATAGAAAGAAAACTGCTGATGG ATATGAAAGATGGATGATGAAAGTGGCAAATAATGGGCCTGCTGCATTTGGTGAACATGGGAGGTTTGATGACAAGGAAA GCATTACAGGTGGAGGGAGAAGCCGTAAAAAAACTGGTGAGGATGATGAAGGTAATGTCTCTGATAAAGAAGATAGAGAA GAGGAGGATGACGAGGAGGAGGCAGAAAGGAAAAATAGATTTGGACAGAATAAGAAAGGAGGTGGTGATGACGATGATGA TGAAGGTCCAAGGGGAGGGGACCTTGATGATGATGACTTTGATGTTGAGAAGGGTGATGATTGGGAACATGAAGAGATTT TCACTGATGATGATGAAGCCGTCGGCAACGATCCAGGGGAAAGGGAAGATTTGGCTCCTGAAGTCCCTGCTCCTCCTGAA ATCAAGCAGGATGATGATGAGGAGGAGGAGGAGGATCGAGATAATGAAGAGGGGGGAGGTCTGAGTAAATCTGGGAAAGA GCTGAAGAAGCTGCTTGGGCGATCTGGTGGTATGGATGAATCAGATGCAGAGGATGAGGATGATGATGAAGACGATATGG ATGATGAGGATGGTGTTCCTCCTGTGACTGCTATAAAGCAGAAGGATGCACCTAAGGAAGAACCTGTTGACAACAGCCCT TCAAAAACCATGGCAACAGGATCTGCTCGTGGAACACCTTCTTCTTCAAAGTCTTCTAAGGGGAAGAGAAAATCAAATGA GGAAGCAAAGCCATCCAATGGTGCAACACCAAAGAAGGTGAAGACAGAAAATGAATCAAAATCATCTACCAAAGATGTAA GTGGGTCTGCTTCTAAAAGTAATCCACCTCCAAAAAGTACACCACAACCATCATCATCAAAAGCTGGGCCTTCTACCACA GCTTCTGGACCTGTTAGTGAGGAAGAAATTAGGGCTGTTTTGTCACAGAAGACCCCAGTGACCACGCAGGATCTTGTAGC TAAATTTAAGGCAAGATTAAGATCTCCAGAGGACAAGCAAGCATTTGCTGAGATCCTGAAGAGAATCTCTAAGATACAGA AGACTGCAAACGGGTCCAGTTATGTTATCCTGAGAGATAAGTGA
Protein sequence (LotjaGi6g1v0287300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLQLKSSCSGCGSTADLYGSNCKHMTLCLTCGKTMAENRAKCRDCGATLNRLIREYSVRASSPSDKHYCIGRFMTGLPD FSRKKSAENKWSLQKDGLQGRQITDTLREKYKNKPWVLEDETGQSQFQGHLEGSQSATYYLLMKEKKEFVAIPAGSWYNF NKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKVANNGPAAFGEHGRFDDKESITGGGRSRKKTGEDDEGNVSDKEDRE EEDDEEEAERKNRFGQNKKGGGDDDDDEGPRGGDLDDDDFDVEKGDDWEHEEIFTDDDEAVGNDPGEREDLAPEVPAPPE IKQDDDEEEEEDRDNEEGGGLSKSGKELKKLLGRSGGMDESDAEDEDDDEDDMDDEDGVPPVTAIKQKDAPKEEPVDNSP SKTMATGSARGTPSSSKSSKGKRKSNEEAKPSNGATPKKVKTENESKSSTKDVSGSASKSNPPPKSTPQPSSSKAGPSTT ASGPVSEEEIRAVLSQKTPVTTQDLVAKFKARLRSPEDKQAFAEILKRISKIQKTANGSSYVILRDK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 545 | 544 | 5.6E-222 | ||
| Pfam | 46 | 545 | 500 | 2.2E-150 | ||
| SUPERFAMILY | 52 | 181 | 130 | 2.59E-31 | ||
| MobiDBLite | 199 | 498 | 300 | - | – | |
| MobiDBLite | 205 | 232 | 28 | - | – | |
| MobiDBLite | 246 | 266 | 21 | - | – | |
| MobiDBLite | 267 | 304 | 38 | - | – | |
| MobiDBLite | 321 | 335 | 15 | - | – | |
| MobiDBLite | 336 | 359 | 24 | - | – | |
| MobiDBLite | 360 | 378 | 19 | - | – | |
| MobiDBLite | 379 | 396 | 18 | - | – | |
| MobiDBLite | 399 | 419 | 21 | - | – | |
| Gene3D | 466 | 546 | 81 | 5.7E-11 | ||
| MobiDBLite | 471 | 485 | 15 | - | – | |
| SUPERFAMILY | 478 | 546 | 69 | 3.81E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Transcription initiation from RNA polymerase II promoter | Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription. | ||
| Biological process | Positive regulation of transcription elongation from RNA polymerase II promoter | Any process that activates or increases the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides, catalyzed by RNA polymerase II. |
Expression pattern of LotjaGi6g1v0287300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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