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LotjaGi6g1v0289900.2

Overview

Field Value
Gene ID LotjaGi6g1v0289900
Transcript ID LotjaGi6g1v0289900.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Homeobox transcription factor KN4; TAIR: AT1G62360.1 KNOX/ELK homeobox transcription factor; Swiss-Prot: sp|P46608|HSBH1_SOYBN Homeobox protein SBH1; TrEMBL-Plants: tr|A0A151T6Q4|A0A151T6Q4_CAJCA Homeobox protein SBH1; Found in the gene: LotjaGi6g1v0289900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:60712744..60717283) extracted from Lotus japonicus Gifu genome v1.2.

ATGATGATGATGCCTTTAGTCACTTCTCATCATCAAATAAATCCTCCAAATCCTCATCATCATCATAATAATAACAATAA TAATGCAAACACAAACAACTGTCTCTTCCTTCCCATTCCTTCTTCCACCAACTGCAATAGCAGTGCAAGCCCTTCCATCA TGCTTGATAATAACACCACCCCTACCAACAACCCTGGGTTAGGATATTACTTCATGGAGAGTGACCACCACCACCACAAC AACAACAATGGAAGCTCCTCTTCCTCTTCTCCAGCTGTCAAGGCCAAGATCATGGCCCATCCTCTCTACCAACGCCTCCT AGCAGCCTATGTCAATTGTCAAAAGGTAATTAGAAAAAAAGAAGATATAAAGCTTAATCTTAACTATACTTGTGTGTGAT AAGAAACCCTTCACAGTGATTGATAATGATGCTTTTTCTTTCTTTGGCAAGTTTGGATCTGGGGTGTGTGTTGCATTTTG TACTATGAAACTGTGGAGGTCTTTCCTTTTTCTAACTCCATTGACAATTACAAATTATATTATATGTTCCACTGTAAGGA AAAAATGAGAGTGACGTACAAGTCAAACTTCAAATTAAACCCTTTAGTCTAGAGATGATGAAGACAGTTTTGTTTGTTTC ATGGAAATTTTATGTAACTTTATTTATTTTATTTCATGATGCATGGTTTGTGTGTGTCTGGCAGGTGGGAGCACCACCAG AAGTGGTGGCGAGGTTGGAAGAAGCGTGCGGTTCTGCGGTGGGGATGGCCGGTGATGCTGTTGGGTCAGGTTGTATTGGT GAAGATCCAGCTCTGGATCAGTTCATGGAGGCTTACTGTGAGATGCTGACCAAGTATGAGCAAGAGCTCTCCAAACCATT AAAGGAAGCCATGCTCTTCCTTCAAAGGATCGAGTTTCAGTTCAAAAATCTCACAGTTTCTTCTGACGTTGGTGATGTTC TCTTTCTCTATCATGGATTTTTTTTTATACTTTAATATCTTTTGGTTTTGGAGAAAGTAGGTTTTGTTAGGATTAAAAAA TGCTTTGTTATTAAATTAATTAATGTAGATGAAATCACTACTTTTTCTTTCTCCATGATATTTTATTCTGCTGGCTAGTC TTTTCTTTGCATAAATACTAGCAACGGTGCATGCCCTTGCTCTCAAAACTTGATTTTGTCTGTATATGGTGGTGCATAGT ACATGTTTGTTTTCTGTTCTCCGTGTTCGTGTGTTGATTGAACTGTACTACTACTATCTTGTTAACTCGTGATTTTGTGT GTGCATGCCTCATAGTGACATAATCAGCTGGCAAATGTAAGACTTTGATCATGTTAGGTTATCTATGTATTTCCCCATTT GATGCTTACACAGCAACTCTCTGCAGTTTTAGCTGGTTCTGCTCCCTATCATGTAATTATTTAAAGATTCTACTACTTGA GATGAATCCAAAGATAGAAGAGCAGTTGAGGGAAATAAATGTTTTGTTAAATATAAATGACCTAGGGACTAGGGTTTGTA CTGCACCTTGACCAAGATTGGTAATAGCGAGGTAAACAGTTGGATGGGTTACATAAGTTTCTCTCTTATATGGGGAAGTG TTATGGAGATGAAATAGGGGCAGAAAAGAACTTGAGTCTTTTGAAAATAAGGGCAGAAAAGAACTTCACTCATTTCTACA TTTTTTACCTGCCCATAGAAATGGTTATATATCAATAATGATAGCTTAATTAGTTGGTGAAGGATGAGGAAGTCCCTCAA GTCCTTTGTTACAAATGGACAAGCATTGGTTTGAAACACTTTAAGCTGATATTTGAGTTTCTTCTTTTCTCTTATACTTG TTTTATAGTGTGAGGAGATGTAGTTGAAATATTTGTTCTAGATGTGTATACTAGGTCTTGTCCGGTTGAAAGTGAAGTCT ATGTATTGAATAAATTGCTCATTGTTTTTATTCTCACCTGGTCATTTGTTTTGACAACAGCGGTAGTTTTTCTTCGGTTT TGGAGTTTTCCATATTATATTCTTGTGTTGTTAATTGTGTTCTTGTTTTCTTTCCCTATGGCTTGGTGTTTTCCCCCAAC AGTGAGCATATTCATTCACTCTTGTTGCCCTTAACAATAATGATGTTAAATTTTTGGGCCTAAAAGGGCTTTTGAGAAGG GTCAGGTTTCTTAATAGAGTTTAAGCTATTTGGGTGGTCATGTTGCCCTTAAAAATAAAGATGTTGAGTTTTAAGTTATG TTATCCAATTTGTACCCTCAAGGTTCCATGTGCATATCACTTTTAAATATGGATATTGTTTGACTTGTATAAGTCCAAAA CTAGTGTAACTCTTTGCTTTGTCATTGTTCTGCCTGTGTTTGCGTCTCTGCAGGTGCAGATGCGTGCATTTTGAAATGCT TGTTAGAATTGTGTTGGGGTGTTATGATGCTGATTTATCTGCTTAACTTTAACTGGAAATGGATTTACATTATCACATCC ACATGATGCTAATTGTTGTATGGAATTTGCAATTGATTGAGACAACCATCATATATTTGGGTCAAACTTTACTGCTGAAG TTTTAATGAGTATGATGAAAATAAGTAGTAGCTTATTTTCTTGTTGTGGGATAGAAGCATGACATAGCTTTTGGTAAATT GCTGTTCTCAAGCTTTCAACTATGTATGGGCCGAAAGAAGTAGTAGTTGCTTTCCTCTAGTTGATGTAACGAGATTCTTC TTGTGGGGAGAAATCAAATTAATGGTGCTGATCTCTATGTTCTTGTTATCTAAGAGTTCTTTTGTCGTTCATCAGAAGTG GGTTCTGAATTGTGGAAGTCTAAATTGTGTCTGTTCTGTTGTTAAATATTGCCCTTCAAATTTCTTCAAACATTTAATTC CAATAAAACAGATGGTTCAGAATAGACAATATCTCTTTGTATTTCCATTTTTTAAGATATTTATCTTTGTTGTACATATT CATTAAATGAAAATAAACCATTGTTGATTTCTTTGGGGTTTTAATGATACATGTTTGACTCCCTTAAACAAGGTCTCATC GAGTCTTGTGTATGGTAAAAACACCTGCTTGGGGTTTGAGAGAGCTTGCCCCATCCAGATTTGTATATTCATATTCTCAG CTCAAAAAAACAAAAACAAAATTGCTGTTCAAATTATTCTATCAATAAATGCCTATGCATTTCTTGGGGACTGTCTCACT TACCCCTAGTGTTAATAGCCTCATCTTGGATGGATCAGTTAGATTTTGTATTGAAAATTACACTGGACCTTCTATAGTTA AAACTAAACTAGCCCCCATAGGATGTATTATTATTCAACACTTAGGGTCAATTAGACACCCACTTTCTTTGAGATAGACC CTGAATTTTGGGCAGTTTGAATATTTCTGAAGTACACATGTTACTGCTTTTTTTTGTCTCCTTTATTACTTTAGGGTTCC CCAGTTTTTAAATTTTGTGTAGAAAGAAGCTCCCCTAGGCATGACTAGGGTCTGTGTTTTGATAAAGTATCCCTTCATAT TTTATGGTATGCATCCATTCCTCTGCAGGATACTTTTTCTTTTCTTAACTTTATGGATTCTGTGTAGGAAAAAGGGGGAG GGGTGTCCATTATCTCAGGGTTCATACGCATATAAGCCTTGGGAATAAGTTTTCTAAAGGTGTTTGGCACCCGACTCTTT ATCCTAGTTTAAGTGACAACTTCCAATGTTGAGAATCAATTATTTCCTAATGATTGCAAGTTGTACTTGTTTGTCTTTTA TTTAAAACCAAACATGTTTTGCTAGTTTCAACCAAGTGAATTAGTAATGATATGAAATGGCATGGTGCTGGGTGCCTATG TTCATTGATTTATTGGATGAATGTGAATACTTGAAGTGCAATTTGTCATTGTACTACTCACTCTGAACTTGACCTTTACT TGTTTGCTTTTTTTACTAACATTATTGAACTGATTCATGTGAGGATCAGGTTGTAATGAGGGCACTGAAAGGAACACTGG ATCATCTGAAGAGGATGCTGATCTATACAACATGATAGATCCTCAGGCAGAGGACAGGGAATTAAAGGGTCAGCTTTTGC GTAAGTATAGCGGATACTTGGGGAGTTTGAAGCAGGAATTCATGAAGAAGAGGAAGAAAGGAAAGCTACCAAAAGAAGCA AGGCAACAATTACTTGAATGGTGGAGCAGACATTACAAATGGCCTTACCCATCTGTATGTTGCATGATCCATAACTCTTT AATTTCTTTCCTAATGTCCTGTAAATTGTCAAGTTAATTCATATAGATTGACTTAAACACACATACATAGTTTTAATGTG GTCCAATTAATAACAGGAATCACAGAAGCTGGCACTGGCAGAGTCAACAGGTTTGGATCAGAAACAAATAAACAACTGGT TTATCAATCAAAGGAAACGGCACTGGAAGCCTTCAGAGGATATGCAGTTTATGGTTGTGGACCCAAGCCATCCTCACTAT TACATGGATAATGTTATGAGTGCTCCCTTTCCCATGGATCTCTCCAACCACATGCTCTAG
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0289900.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATAGATCCTCAGGCAGAGGACAGGGAATTAAAGGGTCAGCTTTTGCGTAAGTATAGCGGATACTTGGGGAGTTTGAA GCAGGAATTCATGAAGAAGAGGAAGAAAGGAAAGCTACCAAAAGAAGCAAGGCAACAATTACTTGAATGGTGGAGCAGAC ATTACAAATGGCCTTACCCATCTGAATCACAGAAGCTGGCACTGGCAGAGTCAACAGGTTTGGATCAGAAACAAATAAAC AACTGGTTTATCAATCAAAGGAAACGGCACTGGAAGCCTTCAGAGGATATGCAGTTTATGGTTGTGGACCCAAGCCATCC TCACTATTACATGGATAATGTTATGAGTGCTCCCTTTCCCATGGATCTCTCCAACCACATGCTCTAG
Download CDS Sequence

Protein sequence (LotjaGi6g1v0289900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQIN NWFINQRKRHWKPSEDMQFMVVDPSHPHYYMDNVMSAPFPMDLSNHML
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11850:SF100
1 128 128 6.9E-89 –
PANTHER
PTHR11850
1 128 128 6.9E-89 –
SMART
SM01188
10 31 22 2.8E-8
IPR005539
ProSiteProfiles
PS51213
10 30 21 11.174
IPR005539
Pfam
PF03789
10 31 22 8.8E-12
IPR005539
Gene3D
G3DSA:1.10.10.60
28 100 73 3.8E-22 –
ProSiteProfiles
PS50071
30 93 64 13.086
IPR001356
SMART
SM00389
32 97 66 1.2E-12
IPR001356
SUPERFAMILY
SSF46689
32 108 77 1.75E-20
IPR009057
CDD
cd00086
42 94 53 1.00246E-11
IPR001356
Pfam
PF05920
50 89 40 1.2E-17
IPR008422
ProSitePatterns
PS00027
68 91 24 -
IPR017970

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0289900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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