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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0290100 |
| Transcript ID | LotjaGi6g1v0290100.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine-rich repeat receptor-like protein kinase; TAIR: AT4G22130.1 STRUBBELIG-receptor family 8; Swiss-Prot: sp|Q6R2J8|SRF8_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 8; TrEMBL-Plants: tr|A0A151T6Q0|A0A151T6Q0_CAJCA Protein STRUBBELIG-RECEPTOR FAMILY 8; Found in the gene: LotjaGi6g1v0290100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:60740497..60742978) extracted from Lotus japonicus Gifu genome v1.2.
ACACTCACTCGCACACTCAACACATTGAACAAGCTCACTCACACTCTCGTGTTCCTTTTGCTTTGAGCCACTCTCTCTCT TCATTACTCTAAGCTTGGAATCTCCATCTATCTGTCCCTTTCTTTAATGGCATTGCCTTGTACAACCAGTCACGATCTGG AACCCAACCACTACGCTCTTCTTACTCCTACCCCCTTCTCCATCCTCTTCTTCTGCTTCCTTCACATCTCTTGATTCTTC TCCATGCTACTCTTGCATGTGCTCCTCCTCACCTGAACCAAACCAATACCATAATGGCTCATCATCATCATGCCACTTCC CCTGTTTCGCTGTTTCTCGCTGAGTTCTTCTCATTCTCTTTGATTCTCGCTGCTGCTCTTCTTCCTATTGCCTCAGCCAA CACTGACCCTTCTGATGGTATTCTCTTTTTCCTCTTTTTTTGATATATTTTTTTGATTTTTTCTTGGTATGATGATTGAT CACTCTGTGTTTGATTGGTTTGATGATGTTTGGTTTTGAGAAAAAGATTGGATTTTGCATTCTGGGTAGTGCTTGTTTGA ATGCCCAACTTTAGATTCTTCACCTTTTCAGCTGTGAGTTTTTGGTGTCTGCTTGTAAACACTGTTTGCTGGTTGCAGGG GAAATGCAATGGTTAAAATAAAGGCTTGATTGATTTATTTTTATTTATTTTTTGCTTTGACATGCCAAAAGAAGTGATTT TTAGGTTGAGCCCATGTGGGAGCATTGAGCTCTTAGGCTTCTATTTTGCTTTGTAGAAACTCTGATTGTAGAAAGAGTGT AGTATTGCAATAAATGAAGTCATAGGTGGTTGGTTTTTCACACCAAAAAATGGTCTTTTTTCCCACTCATGTGTTTCAAT AACTCCTTTTGTTCATTCCTTTTCTTCTTCTACTTCTTTTAGGGAAGAAAGGTTAATTGGAACCAATAAGCCGTTTTTCG CATACCATTTATATTTATAAATCTGTTTCTGCAAACCAACATGCTATTACTTTTGTGGAGTTGTAGTAGTTTTAATTTGT TGTTCTTCCTGTTGCAGTTCAAGCTCTTCAGGTCATGTACAACTCGTTGAACAGTCCATCTATGCTAACGGGTTGGAAAG TCGGCGGTGGTGATCCATGCGGAGAGTCATGGAAAGGGATAACTTGTGAGGGCTCAGCTATTGTTTCAATGTATGAGGTT CAGATGATATTGCAATTTGTGATTGTATTAGTAATTTTGAATAAGTAAATTTTTGGTTGTGAAAACTAACTGATCTCCCT GTTGTAATTCTGGTTAGTGAGCTTTCAGGTTTAGGACTCAACGGAACTCTGGGATACTTGCTTTCTAACCTTATGTCACT GAGAAAGCTGTGAGATAATTCTGCTTTATGATTTTGTGTTACACATGGCCTTTAATATTTTTATTAAATTGGTGATTGGT TTTTTATTTTTTTGGCGTGGTTTTCTAGTGACTTAAGTGACAACAAGATCCACGACGCCATTCCCTATCAGTTGCCGCCG AATCTTACAAGCCTGTAATACTCACCTCTTATTACCAGCTCTTTTCATTTCTTGATCAGTTTCATTTTGCTGCTTTATCT GAAATTTTCATTTTTCTTGTCACTGAAATGTGTCATTAATCTTCAATTGCAACTAGCAGAAATCTTGCAAGAAATAACTT AACTGGGAATCTTCCTTATTCTATTTCTATCATGGCTTCACTCAATTATCTGTAAGTTGCTTGTGAATGCTATGATTTTA TTTCCCAATATTTATTTTGGTCATATATTGGAATTGGAACCACTCTTACCCTGTATTTCCATGTGTTTTTCAGGAATTTA AGCAATAATTTGCTCTCCCAGTCAATTGGTGACATTTTTGCTAATCTTACTAATCTTGCTAACCTGTAAGATCTCTTACA AAGTGTCTCTAGTCCATTTCCTCTAATTTATTTCATTTTCTAATTCTAACTAAGAAAATAATGCATATTGTACGGATCCG CGGTCATGGTTAACCAATTTTGCCACTAATTTTTTGTGTTTTGCCATAAAAGAAGTGTTTCCCTAGAATCGAAGGAAGGA ACAAAGTCAGATAGAATCAGATTCAATTTCAAAATTACGAATGGAATCATCGATTTGCGTGAAAATGAAGCAAAGCAAAG CGAAGTAAGTGTATGAATGACAGTAATGGCGAGATAGGTTGCTTACAGTGAGAGGAAGGTTGGTGCGATCGTTAGGCTTC ATTCTGGCGCGCAACAAAATGGAGAGAGCTTTCTTCTTGTTCATGTTTGTTTGGGTTGGTATATAAATATATTCGCAATC GAAATCAAAAGCGGTAGAATCAATTAACCAATCCAAATTGGGTTTAGGACTGTTTCTTACATGATTTTTCAGCCACAGCC TTTACTCTTTTTCATTTCCACGTTTTTCTCACCAAGTGTTGCGTTGCGTTGCTTGCAGTCCACAACAATATAACATCTGT TC
CDS sequence (LotjaGi6g1v0290100.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCATCATCATCATGCCACTTCCCCTGTTTCGCTGTTTCTCGCTGAGTTCTTCTCATTCTCTTTGATTCTCGCTGC TGCTCTTCTTCCTATTGCCTCAGCCAACACTGACCCTTCTGATGTTCAAGCTCTTCAGGTCATGTACAACTCGTTGAACA GTCCATCTATGCTAACGGGTTGGAAAGTCGGCGGTGGTGATCCATGCGGAGAGTCATGGAAAGGGATAACTTGTGAGGGC TCAGCTATTGTTTCAATTGAGCTTTCAGGTTTAGGACTCAACGGAACTCTGGGATACTTGCTTTCTAACCTTATGTCACT GAGAAAGCTTGACTTAAGTGACAACAAGATCCACGACGCCATTCCCTATCAGTTGCCGCCGAATCTTACAAGCCTAAATC TTGCAAGAAATAACTTAACTGGGAATCTTCCTTATTCTATTTCTATCATGGCTTCACTCAATTATCTGAATTTAAGCAAT AATTTGCTCTCCCAGTCAATTGGTGACATTTTTGCTAATCTTACTAATCTTGCTAACCTAAGTGTTTCCCTAGAATCGAA GGAAGGAACAAAGTCAGATAGAATCAGATTCAATTTCAAAATTACGAATGGAATCATCGATTTGCGTGAAAATGAAGCAA AGCAAAGCGAAGTAAGTGTATGA
Protein sequence (LotjaGi6g1v0290100.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAHHHHATSPVSLFLAEFFSFSLILAAALLPIASANTDPSDVQALQVMYNSLNSPSMLTGWKVGGGDPCGESWKGITCEG SAIVSIELSGLGLNGTLGYLLSNLMSLRKLDLSDNKIHDAIPYQLPPNLTSLNLARNNLTGNLPYSISIMASLNYLNLSN NLLSQSIGDIFANLTNLANLSVSLESKEGTKSDRIRFNFKITNGIIDLRENEAKQSEVSV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 35 | 35 | - | – | |
| Phobius | 1 | 10 | 10 | - | – | |
| SignalP_EUK | 1 | 35 | 35 | - | – | |
| Phobius | 11 | 30 | 20 | - | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| PANTHER | 14 | 184 | 171 | 2.4E-58 | – | |
| PANTHER | 14 | 184 | 171 | 2.4E-58 | – | |
| Phobius | 31 | 35 | 5 | - | – | |
| Phobius | 36 | 220 | 185 | - | – | |
| SUPERFAMILY | 37 | 186 | 150 | 1.7E-24 | – | |
| Pfam | 39 | 78 | 40 | 2.9E-9 | ||
| Gene3D | 39 | 215 | 177 | 1.1E-30 | ||
| Pfam | 104 | 120 | 17 | 0.015 | ||
| ProSiteProfiles | 106 | 127 | 22 | 7.019 | ||
| Pfam | 127 | 183 | 57 | 1.6E-6 | ||
| ProSiteProfiles | 128 | 150 | 23 | 6.041 | ||
| ProSiteProfiles | 152 | 174 | 23 | 6.703 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0290100.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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