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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0306600 |
| Transcript ID | LotjaGi6g1v0306600.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA/RNA helicase protein; TAIR: AT3G06400.1 chromatin-remodeling protein 11; Swiss-Prot: sp|Q8RWY3|ISW2_ARATH ISWI chromatin-remodeling complex ATPase CHR11; TrEMBL-Plants: tr|A0A0L9VFU7|A0A0L9VFU7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0306600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:62378293..62384872) extracted from Lotus japonicus Gifu genome v1.2.
GTTTATAATTTGGTGCTGTTTTGGTCATGCATGGTTTGTGAAACGATTTTGACTGGGAGCTTGACTTTTGTTGACTGGCT TCAGGGTGGGGATCATGTTGATCCTGAAATTAGAAAGCGTGAGAAGAGTAGGTTAAGGGAAATGCAGATAATGAAGAAGC AGAAGGTTCAGGAGATTTTGGATGCTCAAAATGCAGCCATTGATGCTGACATGGTTCGTGTAGTTATGATTAATCTTTGT CGTTTGTGTTCTTGACTGTTTATATGATTGGTGAGTAAATGGCTCTGATGTTTAATGCAGAACAATAGAGGAAAGGGGCG TCTGAAGTATCTGTTACAGCAGACGGAGCTGTTTGCGCATTTTGCTAAGGGTGATCAGTCTTCATCTGTGAAGAAGTCAC GAGGAAGGTACATTCCTAATATTCACTCATACTATGAGTCTATGACAATGTCCCCCACTTTTCCCTCTGTTTTGCTCAGG AGTTTACTACATTTACCATTCAGATTTTGTCACATGTTATAACTTCACCACATTCCTTGGAAGTTTGAAGTAATTTTGTA GGGCATTTACACGCTTTATACGCCTTGGAAGTAGGGAAAAACTGGTCTTTTAACTAGTTGATACAATTTTTACATGCCTT GAAGTACTTTTAAAGGGCATATACTGATATACACGCTTTATACTCCTTGAAAGTAGAAACAAACGGGCCGTCTAACTAAT TGGTATACAGGCAGAGTTCTTATATGCGCTTTAGTGTTTCAGGAAACCAGTAGAAACAATTGTCTTTTAATTTACATTAT TGCTAAACAATTTTTGAATAGTTTCCTCTTAAATGCTAGTTATGTCATTCTCGTCATAGTTGTTTGTAGCCATAAAAAAT ATTATGGTTAATTTCTACTGGTGGTTTCTCATAGACTCCGAAATTTACTGTTGTCTATTTTAGGGGCCGCCATGCATCAA AAGTGACTGAAGAAGAGGAAGATGAAGAATACCTAAAAGAAGAAGAAGATGGTTCAGCAAACACACGCCTAGTGACACAA CCAGCATGTAAGTGTTATTACACTTTTTAGTACATCTAGTACATTCCACTATAATGGAATCTTCCTATCATACTAGTAAA CACTTCCACCTGGTTGTTCCTTTCTTGTTTATTCCCGAAAACTAGTCAGTTGACATTGATTGATTCTAATCCTTGTGTGA TAAGTATCATGGTTCATTATTTTGAACTACTGGTTCAAATGAATGTGAATTGCTTATTTTGTTCATCATTACAGGTATCC AAGGAAAAATGAGGGATTACCAGCTGGCTGGATTGAACTGGCTCATACGATTGTATGAGAATGGAATAAATGGAATTCTA GCTGATGAAATGGTAGGTGTTTGTTGTTGGGCTTGCAGTTGTCTTATTAATTGCATAAGAATGCATCTACTTCATCGTTG TAGTTTGGTTAAGTCAATTTATTTAAATGCCCAATCACATGGCTAAGGTGTAGTGTAGATATTATTGATTAGTTGATTCT GATTAAAATTTACAAATAAATGTGATTTGCAGGGGCTTGGTAAAACATTGCAAACTATATCTTTATTGGGTTATTTGCAT GAGTTTAAAGGAATCAAAGGCCCACATATGGTTGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCG CTTTTGTCCTATTCTGCGTGCTGTAAAATTTCTTGGCAACCCTGATGAAAGGGTAAGACCAGCTTTTGTTGGGTTGTTTA TTTTTTTTTTGGGCAAAGTTTGCAATTGATGATTAAATGACCACTTTTTTACTGTTTTTTAAATTGCTGCAGAGACATAT AAGAGAGGACTTGTTGGTTGCTGGGAAATTTGACGTTTGTGTTACAAGTTTTGAAATGGCAATCAAGGAGAAGACTGCAT TGCGTCGATTTAGCTGGCGCTACATAATCATTGATGAAGCCCATCGAATCAAGAATGAGAACTCTTTGCTGTCCAAAACA ATGAGGCTCTACAGTACAAACTATCGCCTCCTTATTACTGGCACACCACTTCAAGTAATTATATTGTTTATTTCTTTACT TTTGTTTAATTTATTGGTCTATTTTAAAAATGAAAATGGAGTCCTGCCAACTTTCTCATATAGTCAAAATTAGTATGATC TCGTCCTCATGAGTCTCAGCAAATCTTCAAATGAAGAAATTGTTAGTAGTGCTGGAAATATTGGCTGCATTGTTGAATTT CTAAATAATGATCTTCATTAGTTGTTGTAGACTAGGCCATTTTTACTTCTTTCTTTTTGGGGGAGGAGGGATGTGAATAG CATTACCTGTGGAAATTGCTATTATAGTAAGGAAAGAGTATTTGAAATTAATTAGCTACCTTCAGGGGAACCCATATTAT GTAGTATGTTACCAAATTTTGTAAGAGGTTACACATCTGGCATTGCGCTTGTACTGTGATTTTTTATTAACAGTCAAATT TGGTTAGTTAGCAGGCATAGTAAGTCAGATGATTTAATCCTTTGCATTGGTGAACGTTTTAGTGTTCTTGTTTGGTGTTA CTGTTGGTTTTTCCTTCTGCTTTGCAGTTTAAATTGCTGAGTTATATGCTTTTCTGGCTTATTTTGAAATCTGAATTTTA TATTTTTTGTTGTATGTACACTCAAGTACTGACTGCTGTTTGTTATTCATTTTAATGACACAGAACAATCTTCATGAACT TTGGTCTCTTCTCAACTTTCTTCTGCCTGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGAG AAAATGATCAACAGGAAGTTGTCCAACAATTACACAAGGTAAATTATGGAAACATCATTTTGATTGTTGTCAGTCTTTAA TGTAAATCTGATGCATAATTGAAATTTCCATTTATGTGTATATTAGGTTCTCCGACCATTTCTGCTTCGAAGGTTGAAAT CAGATGTTGAGAAAGGGTTGCCACCAAAAAAGGAAACAATTCTCAAAGTAGGCATGTCACAAATGCAGAAACAGTATTAT AAAGCATTACTGCAGAAGGATCTTGAGGTTGTCAATGCTGGTGGAGAGCGAAAGCGTCTTCTGAATATAGCTATGCAATT ACGTAAATGTTGTAATCATCCATATCTTTTTCAAGGAGCTGAACCTGGTCCTCCCTATACAACAGGAGACCATCTCATTA CCAATGCCGGTAAAATCTATTTATATAGAGACTTAAGATGTTTTTGCGGGTTGGTGAATAAAACCTGAAATTGCTCCTTG CTTAAAAATATATTTCCAGGTAAAATGGTTCTTTTGGATAAGCTACTTCCAAAATTGAAAGAGCGTGATTCCAGGGTGCT CATATTTTCACAGGTCAGTTCAGTCAGAATACAGTTCTTCTTACTTGCAATTGTGAATGCTATACATTTCGCGACCTGTT TTTATTTGTTAAATGCTTCGTATGTTAATGTATCACTGACTTTTGAATTTTCTTTTATGCTTATTTTGTGGCCTTCCCCC AGATGACCAGGCTGCTAGACATACTTGAAGATTATTTGATGTTTCGTGGATATCTATATTGTCGCATAGATGGTAATACT GGTGGGGATGATCGTGATGCCTCCATTGATGCTTTCAACAAGCCAGGAAGTGAGAAATTTGTCTTTTTGCTATCAACTCG GGCTGGAGGTCTTGGTATTAATCTTGCTACGGCTGATGTTGTCATTCTATATGACAGTGACTGGTCAGTATTTCAAGCCG TTGGGGACACAGCCATCTGATTTTATATCTGTACTTAATTTTCATTGTTTGTTGATTGCTTTATGGTTTTACAACAGGAA CCCACAAGTTGACTTGCAGGCTCAGGATCGTGCTCATAGGATAGGTCAAAAGAAAGAAGTTCAAGTGTTCCGTTTTTGCA CCGAGGTATGCAATTTTTAAACTTTATTGTACTGTTCAATTAATCTTTCACTGTGGATGTGTGTATTAGTATCTCATGGC ATCACGGTAATGGTACAGTATACAATTGAGGAGAAGGTCATTGAAAGGGCCTACAAAAAGCTTGCACTTGATGCTCTGGT GATTCAGCAAGGGCGATTGGCGGAACAAAAGAGTAGGATTTGCTGGATGAGTGTTCTTGTTTCTTTGTTGCATGATGTAT GAATTGTCTAATATAGTTCCATTGGCCTATATGTGCAGCGGTAAATAAAGATGAGTTACTTCAAATGGTTAGATTTGGGG CTGAAATGGTTTTCAGTTCCAAGGATAGTACAATTACGGATGAGGATATTGATAGAATTATTGCTAAAGGAGAAGAGGCA ACTGCTGAGCTTGATGCCAAGATGAAGAAATTTACTGAAGATGCAATCAAGTTTAAGATGGATGACAGTAAGTAACCTAT ATCTATATATTATAGCTTTGGAAATTATAATGGCTTGATCTTTACAAGTTTTATGCTTTCAGCTGTTCACTAGTTTGGAG ATACTGATACTGATACTTTATTTTTGTAGCTGCTGAATTATATGATTTTGATGATGATAAGGTAAAAATGACATTTATTC TGTCTTTGCCATCTATTAATGCCTTATATCAGCCTTCTCTTCCCAGCCTGTCCTGATCTATTTAATTGACATTGACATCA TTTTTCTTTTTTAAATAAAGGATGAGGACAAATTTGATTTCAAAAAAATTGTGAGTGAAAATTGGATTGAACCACCAAAG AGGGAGCGGAAGCGCAAGTAAGCATCGCCCTTTAAATTTCATACTTCCAAATTTATTCAGTATCTTCTAATGACATGACA TACTGGTTTGGTTTTTTCTGGCTTCTTACAGTTACTCAGAGTCTGAATACTTCAAGCAAACTATGCGTCAAGGTGGTCCT ACTAAACCAAAAGAGCCCCGTATTCCTAGGATGCCCCAGTTGTAAGCTTCTACACTTGATTTTCCTTTCAATATATAGTG CCCCTGTATTACTCAGTTTTTCCCCCCTTTTGCTTCCAGGCATGATTTCCAGTTCTTCAACACACACAGGCTGACTGAGC TGTATGAAAAGGAAGTACGCAATCTCATGGTAGGTGTCTGGAACCTGAATTTGCTTATATGTTTAGGTTTAGTTCTCCAA GTTATTGCTGTTTAATGCGTTTTATTTGAAAAATTTCAGCAAGCACATCAGAAGAATCAAATAAAGGATTCGATAGATGT TGATGAACCAGAAGGTACATGTGTGTTCTGCACTATTATTTTGAATCCTCCTTTCTACATGTCTATTGTTAATTTTAATT ATGATGTATTGGATGTTTAGAGGTGGGAGAACCATTGACTGCTGAAGAGTTGGAAGAAAAGGAACGCCTGCTAGAAGAGG TGAACAATTTCCCCCATACTTTGCAAACTAGGCTTTCATGTGGACATTTTTTAACTTGTTATTTGGCTAATATAGGGATT TTCATCATGGAGCCGGAGAGATTTTAATACTTTTCTTAGGGCCTGTGAAAAGTATGGACGGAGTGATATAATAAATATTG CTTCTGAGATGGAAGGAAAAACTGAGGAGGAAGTTGAAAGATATGCAAATGTCTTCAAAGAAAGATACAAAGAGTTAAAT GGTATGTTACAGTCAATGTGACCAAGGAGCAATCTTTTTTTATTTTGTATGTTTGAACATGGAATCTAAATAGATAGCCA AATCCAAATGAGTGTATCTGAGTTGACAATAGTGTCCAAGAAAATCAAATTTCTTTTTTCATGTAGCCAACATTATTGAT ATTTTGATATGGACTTGTGCTGTGTTGAGTTAAAATGCATCTCATTTCTGGATTTATTCTTTTTGTTATGCATGTGTATG TGCTATTTATCAATTGTAGCTTGAATTTAGTCTCATCAAAATGTTAAGGTTCTGCTTAATTTGTGCATTTTGAATCATTG TCTACAGATTATGATAGAATTATTAAAAACATTGAGAGGGGGGAGGCTAGAATTTCTCGGAAAGATGAGATCATGAAAGC TATAGGGAAGAAGTTGGACCGTTACAAGAATCCTTGGCTAGAGTTGAAGATACAGTATGGGCAAAACAAAGGGAAGTTAT ATAATGAAGAATGTGACAGATTTATGGTAGGAATTTCATTTATTTTTTCAATTTTTTTCTTTCATGTCCAGCTCCAGTGG TCTTTAATTCTGCTATAAATTTGCAGATATGCATGGTTCACAAACTCGGCTATGGGAACTGGGATGAGTTGAAGGCAGCA TTTCGAACATCTCCCTTGTTTAGATTTGATTGGTTTGTTAAGTCTCGCACAACACAGGAACTAGCCAGGAGGTGTGACAC CCTCATTCGGCTGGTAGAAAAGGAAAACCAAGAATATGATGAGAGGGAGAGACAAGCTCGTAAAGAGAAAAAACTGGCCA AGGTAAGTTTATCTGTGTTTACTCAAAATACCTTCAGGTTTCTACTATTGCATTTTTGAAATTTCCCCATACTCAAGTTT GACAAATTTTTCAGAGCATGACCCCATCAAAGCGTGCTGTGGCTAGACAAACAGAGTCTCCATCTTCTACAAAGAAGCGC AAGCAATTAACTATGGATGA
CDS sequence (LotjaGi6g1v0306600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGATAATGAAGAAGCAGAAGGTTCAGGAGATTTTGGATGCTCAAAATGCAGCCATTGATGCTGACATGAACAATAG AGGAAAGGGGCGTCTGAAGTATCTGTTACAGCAGACGGAGCTGTTTGCGCATTTTGCTAAGGGTGATCAGTCTTCATCTG TGAAGAAGTCACGAGGAAGGGGCCGCCATGCATCAAAAGTGACTGAAGAAGAGGAAGATGAAGAATACCTAAAAGAAGAA GAAGATGGTTCAGCAAACACACGCCTAGTGACACAACCAGCATGTATCCAAGGAAAAATGAGGGATTACCAGCTGGCTGG ATTGAACTGGCTCATACGATTGTATGAGAATGGAATAAATGGAATTCTAGCTGATGAAATGGGGCTTGGTAAAACATTGC AAACTATATCTTTATTGGGTTATTTGCATGAGTTTAAAGGAATCAAAGGCCCACATATGGTTGTTGCTCCAAAATCTACT CTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTATTCTGCGTGCTGTAAAATTTCTTGGCAACCCTGATGAAAG GAGACATATAAGAGAGGACTTGTTGGTTGCTGGGAAATTTGACGTTTGTGTTACAAGTTTTGAAATGGCAATCAAGGAGA AGACTGCATTGCGTCGATTTAGCTGGCGCTACATAATCATTGATGAAGCCCATCGAATCAAGAATGAGAACTCTTTGCTG TCCAAAACAATGAGGCTCTACAGTACAAACTATCGCCTCCTTATTACTGGCACACCACTTCAAAACAATCTTCATGAACT TTGGTCTCTTCTCAACTTTCTTCTGCCTGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGAG AAAATGATCAACAGGAAGTTGTCCAACAATTACACAAGGTTCTCCGACCATTTCTGCTTCGAAGGTTGAAATCAGATGTT GAGAAAGGGTTGCCACCAAAAAAGGAAACAATTCTCAAAGTAGGCATGTCACAAATGCAGAAACAGTATTATAAAGCATT ACTGCAGAAGGATCTTGAGGTTGTCAATGCTGGTGGAGAGCGAAAGCGTCTTCTGAATATAGCTATGCAATTACGTAAAT GTTGTAATCATCCATATCTTTTTCAAGGAGCTGAACCTGGTCCTCCCTATACAACAGGAGACCATCTCATTACCAATGCC GGTAAAATGGTTCTTTTGGATAAGCTACTTCCAAAATTGAAAGAGCGTGATTCCAGGGTGCTCATATTTTCACAGATGAC CAGGCTGCTAGACATACTTGAAGATTATTTGATGTTTCGTGGATATCTATATTGTCGCATAGATGGTAATACTGGTGGGG ATGATCGTGATGCCTCCATTGATGCTTTCAACAAGCCAGGAAGTGAGAAATTTGTCTTTTTGCTATCAACTCGGGCTGGA GGTCTTGGTATTAATCTTGCTACGGCTGATGTTGTCATTCTATATGACAGTGACTGGAACCCACAAGTTGACTTGCAGGC TCAGGATCGTGCTCATAGGATAGGTCAAAAGAAAGAAGTTCAAGTGTTCCGTTTTTGCACCGAGTATACAATTGAGGAGA AGGTCATTGAAAGGGCCTACAAAAAGCTTGCACTTGATGCTCTGGTGATTCAGCAAGGGCGATTGGCGGAACAAAAGACG GTAAATAAAGATGAGTTACTTCAAATGGTTAGATTTGGGGCTGAAATGGTTTTCAGTTCCAAGGATAGTACAATTACGGA TGAGGATATTGATAGAATTATTGCTAAAGGAGAAGAGGCAACTGCTGAGCTTGATGCCAAGATGAAGAAATTTACTGAAG ATGCAATCAAGTTTAAGATGGATGACAGTAACTGCTGA
Protein sequence (LotjaGi6g1v0306600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQIMKKQKVQEILDAQNAAIDADMNNRGKGRLKYLLQQTELFAHFAKGDQSSSVKKSRGRGRHASKVTEEEEDEEYLKEE EDGSANTRLVTQPACIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFKGIKGPHMVVAPKST LGNWMNEIRRFCPILRAVKFLGNPDERRHIREDLLVAGKFDVCVTSFEMAIKEKTALRRFSWRYIIIDEAHRIKNENSLL SKTMRLYSTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDV EKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNA GKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYLYCRIDGNTGGDDRDASIDAFNKPGSEKFVFLLSTRAG GLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKT VNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDSNC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 4 | 47 | 44 | 1.0E-4 | ||
| PANTHER | 8 | 623 | 616 | 0.0 | – | |
| PANTHER | 8 | 623 | 616 | 0.0 | – | |
| MobiDBLite | 52 | 85 | 34 | - | – | |
| SUPERFAMILY | 84 | 315 | 232 | 5.96E-60 | ||
| SMART | 96 | 288 | 193 | 1.9E-37 | ||
| CDD | 97 | 317 | 221 | 3.05245E-142 | – | |
| Gene3D | 101 | 316 | 216 | 8.9E-73 | ||
| ProSiteProfiles | 112 | 277 | 166 | 25.335 | ||
| Pfam | 113 | 380 | 268 | 1.4E-72 | ||
| SUPERFAMILY | 317 | 597 | 281 | 5.9E-74 | ||
| Gene3D | 321 | 613 | 293 | 1.9E-123 | – | |
| CDD | 401 | 526 | 126 | 8.06598E-54 | – | |
| Pfam | 403 | 515 | 113 | 8.6E-19 | ||
| ProSiteProfiles | 405 | 556 | 152 | 19.955 | ||
| SMART | 431 | 515 | 85 | 1.0E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi6g1v0306600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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