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PF13892

Source: Pfam

Description

DNA-binding domain

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Associated Lotus transcripts 10

Transcript Name Description Predicted domains Domain count
Lj0g3v0361339.2
– PREDICTED: helicase SRCAP-like [Cicer arietinum] gi|502122805|ref|XP_004497900.1|
Domains
7
Lj6g3v1919360.1
– Chromatin remodeling complex subunit [Medicago truncatula] gi|357447407|ref|XP_003593979.1|
Domains
34
LotjaGi1g1v0670100.1
– DNA helicase INO80; TAIR: AT3G57300.1 DNA helicase INO80-like protein; Swiss-Prot: sp|Q8RXS6|INO80_ARATH DNA helicase INO80; TrEMBL-Plants: tr|I1N8X6|I1N8X6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0670100
Domains
24
LotjaGi1g1v0670100.2
– DNA helicase INO80; TAIR: AT3G57300.1 DNA helicase INO80-like protein; Swiss-Prot: sp|Q8RXS6|INO80_ARATH DNA helicase INO80; TrEMBL-Plants: tr|I1N8X6|I1N8X6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0670100
Domains
24
LotjaGi1g1v0670100.3
– DNA helicase; TAIR: AT3G57300.1 DNA helicase INO80-like protein; Swiss-Prot: sp|Q8RXS6|INO80_ARATH DNA helicase INO80; TrEMBL-Plants: tr|I1N8X6|I1N8X6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0670100
Domains
24
LotjaGi1g1v0670100.4
– DNA helicase; TAIR: AT3G57300.1 DNA helicase INO80-like protein; Swiss-Prot: sp|Q8RXS6|INO80_ARATH DNA helicase INO80; TrEMBL-Plants: tr|I1N8X6|I1N8X6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0670100
Domains
24
LotjaGi4g1v0345700.1
– DNA/RNA helicase protein; TAIR: AT5G18620.2 chromatin remodeling factor17; Swiss-Prot: sp|F4JY24|CHR17_ARATH ISWI chromatin-remodeling complex ATPase CHR17; TrEMBL-Plants: tr|A0A1J7I094|A0A1J7I094_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0345700
Domains
37
LotjaGi6g1v0306600.1
– DNA/RNA helicase protein; TAIR: AT3G06400.2 chromatin-remodeling protein 11; Swiss-Prot: sp|Q8RWY3|ISW2_ARATH ISWI chromatin-remodeling complex ATPase CHR11; TrEMBL-Plants: tr|I1M1D0|I1M1D0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0306600
Domains
37
LotjaGi6g1v0306600.2
– DNA/RNA helicase protein; TAIR: AT3G06400.2 chromatin-remodeling protein 11; Swiss-Prot: sp|Q8RWY3|ISW2_ARATH ISWI chromatin-remodeling complex ATPase CHR11; TrEMBL-Plants: tr|A0A0B2RF13|A0A0B2RF13_GLYSO Putative chromatin-remodeling complex ATPase chain; Found in the gene: LotjaGi6g1v0306600
Domains
37
LotjaGi6g1v0306600.3
– DNA/RNA helicase protein; TAIR: AT3G06400.1 chromatin-remodeling protein 11; Swiss-Prot: sp|Q8RWY3|ISW2_ARATH ISWI chromatin-remodeling complex ATPase CHR11; TrEMBL-Plants: tr|A0A0L9VFU7|A0A0L9VFU7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0306600
Domains
21

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 10.00