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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0310500 |
| Transcript ID | LotjaGi6g1v0310500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 1-deoxy-D-xylulose 5-phosphate synthase 1; TAIR: AT2G34590.1 Transketolase family protein; Swiss-Prot: sp|O64688|ODPB3_ARATH Pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic; TrEMBL-Plants: tr|V7BPK8|V7BPK8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0310500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:62925610..62929365) extracted from Lotus japonicus Gifu genome v1.2.
CTTTATTATGCGGAACAAGTTGTTGCATTGCATTGATCATAGCTACGATAGTAGCAACGTTAAAACCTGTTACACATACA CACAACACAAAGCTGTGAACTAAACAACATTCCTCAATTTCTCCGCCCAATCTGTGTTTTTTTCCAATCCCATTGCATTG TATTTGCCTCTTCTTCCTCTTCTATATAGTTTCTCGCAACTCTTTCTTTCCTCTGTTCATTGCATTTCCACCCTTGTTGC TTGCCAAACTTCGATCTCCTCGGTGACTGTTTCAATCAATGGCGACCCTTTTCCAGGGAGTAGGAGCTGCCACTGCATTC TCCGCCTCCAACAAATTGCACCTCCCATCTCGTGGATCCCTCTCAGGTTCGCTTCAATTTTCTACAAAAATGATGCAATT TTTAATAAAATTCAATAAATATTGATCTCATGGAGGAAGCATAGGAATTGGAGAGAACCACTAGTTAATAGGATTATAAT GTTCATTGTGATTGTAGAATCCATATATGTTCAGCTTTGTTGGGTGGTCTCTATATTTTATGTTCATGGACTCTGATTTC AATTTTTGTTCTCTTGCTTTACCTGTTAAAAACAGTCACTTTTGTAGGATTTGTATTCCTCTAAATGCTGTTTGTTTCAT TTTGATGCTATTTATTCTTCAACTTGTCACTCTCCTGTCAGTGTTGTTAATCTCGGTCTTCAATCGGTTGTTGATCATCG ATGTTGTTGTGTTGCTGGCATTCTGTCTCTCAGCTTAATTTGCACATTCTAGAAGAAACTGGATAATTAGGATTTGGATT TCAATTTTTTTCAATATCTGTTCTTTTCCTTTGATTAAGTACTGTACTTGATGAGTATTTACTGAAATGTTGTTTCTTTC ATTTTGTGTACACCTTTTGATGATTTAGAAAGCAAAGGTAGCATATTTGTTGTCAGATCTGATGCATGGATGAACAACCT CCTCAACCTAGAAGCTCGACAGCCTCAGCGATTGATTACTAGTGCAGTTGCAGTGAGTTATCTGATTCCCATACATTCTA TCTCCTATTACATGGTTTTATCTTGTTTCTAATTAGTATGCGGGTTATTTGCAGACGAAAGCAGACAGTTCCGCATCAAC GAAAACTGGGTATGTTTTTTTCCTGCAATTAGTTGTTGATTTTATCTTACCAACATTTTATATGTTAAACATTTATCATG TCTTACAACAACATATATAATGTAAGAAATGTATTAAGTTGATATTTTTACACTTTTTTGCCTGTAATTTGACCTCTTTG TTCAATGCAATTTAACTGAAACATGTTCTCTGTTCCAGTTTTCCTATAAATGCCCTTACAAGTCATCTTAAATGTTTATG GCTATGAACACTTATATCATGCTTAGCCTCCCACTAAAAGTTTTAGCTTTTATGAGAAATAGAATTTGACAATAGTAAAA AAACTATGAGGCACCTAAAGTTAATGTATCTCCCTTGAGTTGAGAAGCTCCTCTGGCCGCCTCTTGTCATGTCCAGTCAC ATTCAGAAACACAACCAGAGTATCATTGTTAGGATCAAAGCTCACTATTTGCTGAATGTTTATTGGGATTTTCACATCGT TTACCCTTTCACAATAAAGGAATAAAAAGACTCTCTTCAGGCCCTAGACTCAGTCCCTTTCACACCTCAATGGCCCTTGC CTAGGCACCAAATCAGTGCTTGAGAAAAAGGCCCTTGCTTGAATGACCAAGAGGGAAGCCTTGAGGCCTTTTGGCTCTGG CATAGCCTTAGGAAGAGCTTTAATGTGGTGCTAGTGTTATCACAAGTAGGAGAATTAACATGCCATTGTGGAAGTGATAC GTGGTGCAGAAGAGACTGTAAAAATTATAACTCTGAATTGACTCACTTGCTTTCAAAATGAGTTTGTTTTTATTTACCGA CCAGTATAAATACAGAGTATCATATTCCAGGCTTATTGATCTAAAATTATAGGTGTTCTCTACTTTTCTTATTAAAGCTT ATTTTATCTTTACACCTGAAATGGGCTCTGGATACACGTTTTACTTAGAGAATGCTAGTGTATTCGAAATTCGCCCAGAA TGCATCACAAATGATGAGCCAACCTCATGAGACACAATTTTTAGATTTCATAGTTGATCTTCGAGCACTTAAAAGGGTGG TTTGGAAGTCACAAGGAATAGCTGTTTCAGGTGGTTGATTTTAATGCTGGAAACTACCCCTTTTTTTGGTGTTTTTTGTT TCCTTTCGGGCTGACGAAACACAGGAACAGAAAGAAAATATAAGGGTAGAACTTAGATAAAGGTTGAAAAGGGACATTTA TATGACTCTTAATTTAGATCCCCCGTCAATACAAGATGTTTGATTGGACTTGCTAAAAGCATGCTTTGGCATTTGTTTTG AGTTCTGATATAACACCATTTAATGATGGAATTGATATTTGCATTTGACTCTCAGGCATGAACTTCTTCTTTTTGAAGCC TTACGTGAAGGTTTGGAAGAAGAAATGGAAAGGGATCCCCGAGTATGCGTCATGGGTGAAGATGTAGGTGATTATGGTGG GTCTTACAAGGTGACTAAAGGCCTAGCCCCTAAGTTTGGAGACCTCAGGGTTTTGGACACCCCTATTGCTGAAAATGCCT TCACAGGCATGGGCATTGGGGCTGCCATGACTGGTCTGAGGCCAATTATTGAGGGCATGAACATGGGATTTCTGCTTCTT GCATTTAACCAGATCTCTAACAACTGTGGCATGCTCCACTACACATCTGGAGGCCAGTTTAAGATACCGGTTGTTATTCG TGGACCTGGTGGAGTCGGGCGGCAACTTGGGGCTGAGCACTCGCAGCGACTGGAGTCATATTTTCAGTCAATCCCTGGAA TCCAGATGGTGGCTTGCTCAACCCCTTACAATGCTAAGGGCCTGATGAAAGCTGCAATCCGAAGTGAGAACCCTGTGATA CTTTTTGAGCATGTATTGCTTTATAACCTCAAGGAGAGAATCCCAGATGAAGAGTATGTATTGTCACTTGAAGAAGCTGA GATGGTTAGGCCTGGGGAACATATCACAATTTTAACCTATTCCAGAATGAGGTATCATGTAATGCAAGCTGCAAAGACAC TGGTGAACAAAGGGTATGATCCTGAGGTGATTGACATCAGGTCTTTGAAACCATTTGACCTTCACACAATAGGGAATTCA GTGAAGAAAACTCATCGTGTGCTGATTGTGGAAGAGTGCATGCGTACTGGTGGAATTGGTGCTAGCCTTACAGCTGCTAT CACTGAAAATTTCAATGACTATTTGGATGCTCCTGTTGTGTGTTTATCCTCTCAGGATGTGCCAACCCCATACACAGGGC CATTGGAGGAATGGACAGTGGTGCAACCTGCTCAGATTGTGACAGCAGTTGAGCAGCTATGCCAGTAATTGTTCAAAATA TCACCTCCAATAAGGACATGGTTCTGTTCAACCTACTATAGCTAGAACTTCCTTTACAATTTTCTCTCTTCTTCCTTCTC TTTCACTTCTTGGTCCCCTCACTATAAATGTTTTGGATATCCTTTGTAATGTTTTTACAAAATATTTACAATTTGTCAAC ACAATGTGGGATCGTAGTCTCAATCCATTTGTCTTTATGAATCAGTTTGTTTCATTTTCATGGTTGTGAATTTAGTCAAA AGTTTGTTAGGGATATGGAAAAACATGTAGTTCTGACACCTCTTGAATAATTGATAAAAAAATATTTATTGGTTAA
CDS sequence (LotjaGi6g1v0310500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACCCTTTTCCAGGGAGTAGGAGCTGCCACTGCATTCTCCGCCTCCAACAAATTGCACCTCCCATCTCGTGGATC CCTCTCAGAAAGCAAAGGTAGCATATTTGTTGTCAGATCTGATGCATGGATGAACAACCTCCTCAACCTAGAAGCTCGAC AGCCTCAGCGATTGATTACTAGTGCAGTTGCAACGAAAGCAGACAGTTCCGCATCAACGAAAACTGGGCATGAACTTCTT CTTTTTGAAGCCTTACGTGAAGGTTTGGAAGAAGAAATGGAAAGGGATCCCCGAGTATGCGTCATGGGTGAAGATGTAGG TGATTATGGTGGGTCTTACAAGGTGACTAAAGGCCTAGCCCCTAAGTTTGGAGACCTCAGGGTTTTGGACACCCCTATTG CTGAAAATGCCTTCACAGGCATGGGCATTGGGGCTGCCATGACTGGTCTGAGGCCAATTATTGAGGGCATGAACATGGGA TTTCTGCTTCTTGCATTTAACCAGATCTCTAACAACTGTGGCATGCTCCACTACACATCTGGAGGCCAGTTTAAGATACC GGTTGTTATTCGTGGACCTGGTGGAGTCGGGCGGCAACTTGGGGCTGAGCACTCGCAGCGACTGGAGTCATATTTTCAGT CAATCCCTGGAATCCAGATGGTGGCTTGCTCAACCCCTTACAATGCTAAGGGCCTGATGAAAGCTGCAATCCGAAGTGAG AACCCTGTGATACTTTTTGAGCATGTATTGCTTTATAACCTCAAGGAGAGAATCCCAGATGAAGAGTATGTATTGTCACT TGAAGAAGCTGAGATGGTTAGGCCTGGGGAACATATCACAATTTTAACCTATTCCAGAATGAGGTATCATGTAATGCAAG CTGCAAAGACACTGGTGAACAAAGGGTATGATCCTGAGGTGATTGACATCAGGTCTTTGAAACCATTTGACCTTCACACA ATAGGGAATTCAGTGAAGAAAACTCATCGTGTGCTGATTGTGGAAGAGTGCATGCGTACTGGTGGAATTGGTGCTAGCCT TACAGCTGCTATCACTGAAAATTTCAATGACTATTTGGATGCTCCTGTTGTGTGTTTATCCTCTCAGGATGTGCCAACCC CATACACAGGGCCATTGGAGGAATGGACAGTGGTGCAACCTGCTCAGATTGTGACAGCAGTTGAGCAGCTATGCCAGTAA
Protein sequence (LotjaGi6g1v0310500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATLFQGVGAATAFSASNKLHLPSRGSLSESKGSIFVVRSDAWMNNLLNLEARQPQRLITSAVATKADSSASTKTGHELL LFEALREGLEEEMERDPRVCVMGEDVGDYGGSYKVTKGLAPKFGDLRVLDTPIAENAFTGMGIGAAMTGLRPIIEGMNMG FLLLAFNQISNNCGMLHYTSGGQFKIPVVIRGPGGVGRQLGAEHSQRLESYFQSIPGIQMVACSTPYNAKGLMKAAIRSE NPVILFEHVLLYNLKERIPDEEYVLSLEEAEMVRPGEHITILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLHT IGNSVKKTHRVLIVEECMRTGGIGASLTAAITENFNDYLDAPVVCLSSQDVPTPYTGPLEEWTVVQPAQIVTAVEQLCQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 15 | 15 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 2 | 10 | 9 | - | – | |
| Phobius | 11 | 15 | 5 | - | – | |
| PANTHER | 12 | 399 | 388 | 1.1E-231 | ||
| PANTHER | 12 | 399 | 388 | 1.1E-231 | – | |
| Phobius | 16 | 399 | 384 | - | – | |
| Gene3D | 77 | 266 | 190 | 6.9E-76 | – | |
| SMART | 79 | 254 | 176 | 8.2E-56 | ||
| SUPERFAMILY | 82 | 277 | 196 | 1.5E-63 | ||
| Pfam | 83 | 253 | 171 | 3.5E-47 | ||
| CDD | 83 | 249 | 167 | 4.92692E-104 | – | |
| SUPERFAMILY | 262 | 398 | 137 | 9.42E-36 | ||
| Gene3D | 267 | 399 | 133 | 4.2E-38 | ||
| Pfam | 269 | 390 | 122 | 4.0E-36 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Pyruvate dehydrogenase (acetyl-transferring) activity | Catalysis of the reaction: pyruvate + lipoamide = S-acetyldihydrolipoamide + CO2. | ||
| Biological process | Acetyl-CoA biosynthetic process from pyruvate | The chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate. |
Expression pattern of LotjaGi6g1v0310500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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