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LotjaGi6g1v0314300.1

Overview

Field Value
Gene ID LotjaGi6g1v0314300
Transcript ID LotjaGi6g1v0314300.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Serine hydroxymethyltransferase; TAIR: AT4G32520.1 serine hydroxymethyltransferase 3; Swiss-Prot: sp|Q94JQ3|GLYP3_ARATH Serine hydroxymethyltransferase 3, chloroplastic; TrEMBL-Plants: tr|V7BSE7|V7BSE7_PHAVU Serine hydroxymethyltransferase; Found in the gene: LotjaGi6g1v0314300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:63253453..63257405) extracted from Lotus japonicus Gifu genome v1.2.

TGACTCCCCAGGGCAAAGACATTAAAAAGTTTTTTGATACAAAAGAGATTAAAAAGTTATTTATAGTAACTTGAATTTAT TTAATATTTAAAAAAATAAAAAAGGTTAAATGGCTATTTATTATCTAGCGTTTCAACCTTCATTCAGCCAAACCCAAACA CACAAGTTGCTAGCTTCCGCCGCTCTCGCGCCGCCACCCGTTCCCACCGTCACCGGCTGCCGTCGTCCCTGTTCTCGCCG TGAGGACGTGCAGCGCCCCTGCCTCGTCTTGTGCTCGTCCCTCGCTGCTTCAGGTTCTACTCCCTGCTTCTTAATGGTTT TGCTGCTTTCCCATTTTTGCATACCCTTGAATTGATTTCAAGGTCTTTCAAGTTTTAGCTGAGTAAAAAATTTACTAGTG TATGCTGTATGAGTTTTTTTTCATTCTGTGACCAGCAAAGAGTAACAATATTTGATGTATTATCTCAATTATTTAGTAAC ATGTCATCTTAATTTTATTTTATAATAATGGATTGTGAACCATGTGTAAGGAGGGTGTGTAAACTGACTTGTATATTTGT ATGACAAGGATGCAAGCCTGTACTGGAGTTGCAATGATGGGTTCTATGCAACAACCTGCTTGGACCAAGGGGCAGAGTTT CCCTGCAATAGGGTATGGCAGCAATGGCTTTATACCTCAAGTCAAGTTCTGCAATGTCAAGCCATGCAAAGCATCATCTT TGTCTATCTCCGTGCCTGAAATTAAAGGTAACTGTAATGTACCATTCTAAGTAATATAAGTATAACAATTGACAATGTCA ACAACTTTATATTTGACTTATGGTAATAAAGTATCCATTTCATGGTAATATTTATTTCTCTAATATGTTCTCTGGTTTGG TGTTCAATATCTTCGTCCTGATCAACATTCTTATATTTTTGTATCAATATATACCTGAATTCAGTATTCAAATATTTTAA TGTATGTTCTATTATGTCAGGTGACGGTAGTAGAATCCTGGACTCTGGCTTGAGTGAAGTTGATCCTGAGGTTTATGCAA TTATCGGCAAGGAAAAAGACCGTCAATTTAAAAGTCTTGAGCTTATTGCTTCTGAAAATTTTACATCTAGAGCAGTGATG GAAGCAGTTGGTTCATGCCTCACAAACAAGTACTCAGAAGGACTTCCTGGTAAAAGGTAAGTTCTTCTTATACTTCTTCT CAGACGATGATAATTTTACAGAAGGCTTCCTTCCTTTTCTGCTTTGGTAATTTTGTTGATTCAAATCTCATGATGCATGT TAGGTACTATGGTGGCAATGAGTTCATTGATGAGCTTGAAATCAAATGTCAAGAAAGGGCACTGGCTGCATTTCATGTAG ATGGTAATAAGTGGGGTGTTAATGTTCAACCATTATCTGGTTCTCCAGCTAACTTTGCAGTGTACACTGCATTACTTAAA CCTCATGATCGAATAATGGTAAACTATTTTCCACCGACATGATTTTGAGCATTCTGAAATGTAAGTCCATTATGTGTCTG TTCTAATGTAAATGATATTATGGTACCAGGGTTTGGACTTGCCTCATGGGGGCCATTTGTCTCATGGATTTATGACGCCT AAAAGACGTGTATCAGCCACATCAATTTATTTTGAATCTATGCCTTATCGACTTGATGAATCAACAGGTTCTTTTATTTT GTCATTAATTTTTTTCAGATATATTGGCTCATTCCTGGAATAACTAGGGATAACAATTTTTTAAAACCCACATTGGATTC ACAACAGGTTTTATTGATTATGATATGCTGGAGAAAACTGCTATTCTCTTCCGACCAAAACTCATAATTGCTGGTGCTAG TGCTTATCCTCGAGACATTGACTATCCTCGCATGAGAAAAGTATGTTCTGTACTTGTGCATTTTTCTGGAACCTTATCCT TGTGATCTAATGTCTCTCTACTTCATATGTGATATTTTTCTCGGGTTAAGGCTAATTGCATCTTATGTGCATGGGAAGAT TGCAGATCAAGTAGGAGCTTTCCTTATGATGGATATGGCTCACATAAGTGGACTTGTTGCTGCATCTGTGCTTGCTAATC CCTTTGATTTCTGTGACATCGTGACCACCACAACCCACAAGGTTTGCCTTGAGACATTTCTAGGTTGCTCTTTGTATTTT TTCCCTTAAAATGAAAGAAGAGGAATTTAGATCTTTTTGTTTTTGTTTTGTAAAAACCTAGTGCTGTTTACTTGAAACTG TGAAGTGAATACTTTTCTTTGATATTTTCCTGCAGTCTTTGAGAGGCCCTAGAGGTGGTATGATATTCTTCAAGAAGGAT ACAGTGCATGGGGTTGATCTGGAGCCTGCCATTAACAATGCTGTTTTCCCCGGTCTCCAGGTAAATTAGGAATGTCCTCT CATAATTTAGTTCTGTTTTAACTATTCGGGTTGAGAACACCCATTACCTTTATGGATATATGGAGTCACATGCATTTATC TTCCTAGTTTGTGATACTGATATAGTTTACAATTGTCCAGGGGGGTCCTCATAACCACACAATCGGAGGACTAGCGGTTT GCTTGGAGCATGCCCAGTCTCCAGAATTCAAAGTTTACCAAAACCAGGTACGTAATATCTTTCTCATCATTGGTTTTAGT TGGGCATATGGCACTTGCTAATAATGACACTCATTAAACTACCACCCTGCAGGTGGTTGCTAACTGTAGAGCTTTGGCTA ACCGGTTAGTCGAGCTGGGGTATAAACTGGTTTCTGGTGGTAGTGATAATCACCTGGTTCTTGTTGATCTGAGGCCATCT GTAAGCTTCTTGCTCTCTTTTTTTCTTTTGCGTCACAATAAAATCATAATTTCCTCATTTCTTCCCCTCGTCCTTTCCCT TGTAAAATAATGTAGGAGGGCCAAGTTTGCTCATAACTTAGCAGTCCAATGTAAATTGCTAGCATATTTTATAACATGAA ATGATATGATTTTGCAATATTGAAAAGTATGATCCTTTTTAGTACTTCGCTGTATGTCATATTAATCAGCATCACATCCT TTAGGGTATTGATGGTGCTCGGACAGAGAAAATTCTTGATCTGGCTTCTATAACACTCAACAAGAACTCAGTGCCTGGTG AGAGACTTGATGTTTGTTGTGTATCTTTTAGTTTGCCGATTCATTTGTGATACTTCTGTCCCATTATACTGACATGTGCT AAACACTACAGGTGATAAGAGTGCCCTAGTTCCAGGTGGCATTCGCATCGGGTCACCTGCAATGACAACAAGAGGACTTG GTGAAAAAGAATTTGCACTAATTGCAGACTTAATTCACGAGGGTGTGCAGATAAGTCTTGAAGCCAAAAGTTTGGCCTCA GGATCAAAGCTCCAAGATTTTATGAACCTTGTTTTATCTCCTGAATTTCCTTTGCAAGACAAGGTTACAGAGTTACGTAA GAAAGTTGAAGCACTTGCTACTCGGTATCCAATTCCTGGAGTCTAATTGCACTTGCTTCGTGAATGCTAAAAACTAAGGC ACTTGAATTTTTTTGATGCAAGCACAGAAGTGGATGCAGATCTTCCCAAGCACAGAGCTTCGGCACTTATAATTGCTTCT TATGTGCTTGGGAGTATGTTTGTTTTGTTTCTTGCTGATAATATCTATTGTGGTTCTATTCCATTTGGAAGTGGATGCAG ATCAATACTTGATGCTTCAAATTTCTTTAGGTTCCTGGTTTGACTAAAAACAGTTTTTCCTTGTTGAATTTCATCTCTAC AGAGATAGATTGTTTTTTTTTTTTGTGACAGAGTAAGACAGTGCTAGCAAATAACCATCAAAGACCATAATGATAATATT GTGCCATGAAGACAACAAACCAAACAATAAGTAAAAATAAAGATATGAAGTAAGTTACTTTTAAAATCCCTCATTTTCTC TCAACCAGACTGAATGTCTAATTAAAATTCATC
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0314300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAAGCCTGTACTGGAGTTGCAATGATGGGTTCTATGCAACAACCTGCTTGGACCAAGGGGCAGAGTTTCCCTGCAAT AGGGTATGGCAGCAATGGCTTTATACCTCAAGTCAAGTTCTGCAATGTCAAGCCATGCAAAGCATCATCTTTGTCTATCT CCGTGCCTGAAATTAAAGGTGACGGTAGTAGAATCCTGGACTCTGGCTTGAGTGAAGTTGATCCTGAGGTTTATGCAATT ATCGGCAAGGAAAAAGACCGTCAATTTAAAAGTCTTGAGCTTATTGCTTCTGAAAATTTTACATCTAGAGCAGTGATGGA AGCAGTTGGTTCATGCCTCACAAACAAGTACTCAGAAGGACTTCCTGGTAAAAGGTACTATGGTGGCAATGAGTTCATTG ATGAGCTTGAAATCAAATGTCAAGAAAGGGCACTGGCTGCATTTCATGTAGATGGTAATAAGTGGGGTGTTAATGTTCAA CCATTATCTGGTTCTCCAGCTAACTTTGCAGTGTACACTGCATTACTTAAACCTCATGATCGAATAATGGGTTTGGACTT GCCTCATGGGGGCCATTTGTCTCATGGATTTATGACGCCTAAAAGACGTGTATCAGCCACATCAATTTATTTTGAATCTA TGCCTTATCGACTTGATGAATCAACAGGTTTTATTGATTATGATATGCTGGAGAAAACTGCTATTCTCTTCCGACCAAAA CTCATAATTGCTGGTGCTAGTGCTTATCCTCGAGACATTGACTATCCTCGCATGAGAAAAATTGCAGATCAAGTAGGAGC TTTCCTTATGATGGATATGGCTCACATAAGTGGACTTGTTGCTGCATCTGTGCTTGCTAATCCCTTTGATTTCTGTGACA TCGTGACCACCACAACCCACAAGTCTTTGAGAGGCCCTAGAGGTGGTATGATATTCTTCAAGAAGGATACAGTGCATGGG GTTGATCTGGAGCCTGCCATTAACAATGCTGTTTTCCCCGGTCTCCAGGGGGGTCCTCATAACCACACAATCGGAGGACT AGCGGTTTGCTTGGAGCATGCCCAGTCTCCAGAATTCAAAGTTTACCAAAACCAGGTGGTTGCTAACTGTAGAGCTTTGG CTAACCGGTTAGTCGAGCTGGGGTATAAACTGGTTTCTGGTGGTAGTGATAATCACCTGGTTCTTGTTGATCTGAGGCCA TCTGGTATTGATGGTGCTCGGACAGAGAAAATTCTTGATCTGGCTTCTATAACACTCAACAAGAACTCAGTGCCTGGTGA TAAGAGTGCCCTAGTTCCAGGTGGCATTCGCATCGGGTCACCTGCAATGACAACAAGAGGACTTGGTGAAAAAGAATTTG CACTAATTGCAGACTTAATTCACGAGGGTGTGCAGATAAGTCTTGAAGCCAAAAGTTTGGCCTCAGGATCAAAGCTCCAA GATTTTATGAACCTTGTTTTATCTCCTGAATTTCCTTTGCAAGACAAGGTTACAGAGTTACGTAAGAAAGTTGAAGCACT TGCTACTCGGTATCCAATTCCTGGAGTCTAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0314300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQACTGVAMMGSMQQPAWTKGQSFPAIGYGSNGFIPQVKFCNVKPCKASSLSISVPEIKGDGSRILDSGLSEVDPEVYAI IGKEKDRQFKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEFIDELEIKCQERALAAFHVDGNKWGVNVQ PLSGSPANFAVYTALLKPHDRIMGLDLPHGGHLSHGFMTPKRRVSATSIYFESMPYRLDESTGFIDYDMLEKTAILFRPK LIIAGASAYPRDIDYPRMRKIADQVGAFLMMDMAHISGLVAASVLANPFDFCDIVTTTTHKSLRGPRGGMIFFKKDTVHG VDLEPAINNAVFPGLQGGPHNHTIGGLAVCLEHAQSPEFKVYQNQVVANCRALANRLVELGYKLVSGGSDNHLVLVDLRP SGIDGARTEKILDLASITLNKNSVPGDKSALVPGGIRIGSPAMTTRGLGEKEFALIADLIHEGVQISLEAKSLASGSKLQ DFMNLVLSPEFPLQDKVTELRKKVEALATRYPIPGV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11680:SF34
19 516 498 2.0E-289 –
PANTHER
PTHR11680
19 516 498 2.0E-289
IPR001085
PIRSF
PIRSF000412
61 516 456 4.5E-174
IPR001085
SUPERFAMILY
SSF53383
66 515 450 1.04E-177
IPR015424
Hamap
MF_00051
69 515 447 44.667
IPR001085
Pfam
PF00464
70 460 391 2.7E-190
IPR039429
CDD
cd00378
72 466 395 0.0
IPR001085
Gene3D
G3DSA:3.90.1150.10
74 514 441 1.6E-213
IPR015422
Gene3D
G3DSA:3.40.640.10
99 364 266 1.6E-213
IPR015421
ProSitePatterns
PS00096
293 309 17 -
IPR019798

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0004372
Molecular function Glycine hydroxymethyltransferase activity Catalysis of the reaction: 5,10-methylenetetrahydrofolate + glycine + H2O = tetrahydrofolate + L-serine.
Subterm of
GO:0019264
Biological process Glycine biosynthetic process from serine The chemical reactions and pathways resulting in the formation of glycine from other compounds, including serine.
Subterm of
GO:0030170
Molecular function Pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
Subterm of
GO:0035999
Biological process Tetrahydrofolate interconversion The chemical reactions and pathways by which one-carbon (C1) units are transferred between tetrahydrofolate molecules, to synthesise other tetrahydrofolate molecules.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0314300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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