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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0314300 |
| Transcript ID | LotjaGi6g1v0314300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine hydroxymethyltransferase; TAIR: AT4G32520.1 serine hydroxymethyltransferase 3; Swiss-Prot: sp|Q94JQ3|GLYP3_ARATH Serine hydroxymethyltransferase 3, chloroplastic; TrEMBL-Plants: tr|A0A0R0H289|A0A0R0H289_SOYBN Serine hydroxymethyltransferase; Found in the gene: LotjaGi6g1v0314300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63254160..63256938) extracted from Lotus japonicus Gifu genome v1.2.
AAAGCATCATCTTTGTCTATCTCCGTGCCTGAAATTAAAGGTAACTGTAATGTACCATTCTAAGTAATATAAGTATAACA ATTGACAATGTCAACAACTTTATATTTGACTTATGGTAATAAAGTATCCATTTCATGGTAATATTTATTTCTCTAATATG TTCTCTGGTTTGGTGTTCAATATCTTCGTCCTGATCAACATTCTTATATTTTTGTATCAATATATACCTGAATTCAGTAT TCAAATATTTTAATGTATGTTCTATTATGTCAGGTGACGGTAGTAGAATCCTGGACTCTGGCTTGAGTGAAGTTGATCCT GAGGTTTATGCAATTATCGGCAAGGAAAAAGACCGTCAATTTAAAAGTCTTGAGCTTATTGCTTCTGAAAATTTTACATC TAGAGCAGTGATGGAAGCAGTTGGTTCATGCCTCACAAACAAGTACTCAGAAGGACTTCCTGGTAAAAGGTAAGTTCTTC TTATACTTCTTCTCAGACGATGATAATTTTACAGAAGGCTTCCTTCCTTTTCTGCTTTGGTAATTTTGTTGATTCAAATC TCATGATGCATGTTAGGTACTATGGTGGCAATGAGTTCATTGATGAGCTTGAAATCAAATGTCAAGAAAGGGCACTGGCT GCATTTCATGTAGATGGTAATAAGTGGGGTGTTAATGTTCAACCATTATCTGGTTCTCCAGCTAACTTTGCAGTGTACAC TGCATTACTTAAACCTCATGATCGAATAATGGTAAACTATTTTCCACCGACATGATTTTGAGCATTCTGAAATGTAAGTC CATTATGTGTCTGTTCTAATGTAAATGATATTATGGTACCAGGGTTTGGACTTGCCTCATGGGGGCCATTTGTCTCATGG ATTTATGACGCCTAAAAGACGTGTATCAGCCACATCAATTTATTTTGAATCTATGCCTTATCGACTTGATGAATCAACAG GTTCTTTTATTTTGTCATTAATTTTTTTCAGATATATTGGCTCATTCCTGGAATAACTAGGGATAACAATTTTTTAAAAC CCACATTGGATTCACAACAGGTTTTATTGATTATGATATGCTGGAGAAAACTGCTATTCTCTTCCGACCAAAACTCATAA TTGCTGGTGCTAGTGCTTATCCTCGAGACATTGACTATCCTCGCATGAGAAAAGTATGTTCTGTACTTGTGCATTTTTCT GGAACCTTATCCTTGTGATCTAATGTCTCTCTACTTCATATGTGATATTTTTCTCGGGTTAAGGCTAATTGCATCTTATG TGCATGGGAAGATTGCAGATCAAGTAGGAGCTTTCCTTATGATGGATATGGCTCACATAAGTGGACTTGTTGCTGCATCT GTGCTTGCTAATCCCTTTGATTTCTGTGACATCGTGACCACCACAACCCACAAGGTTTGCCTTGAGACATTTCTAGGTTG CTCTTTGTATTTTTTCCCTTAAAATGAAAGAAGAGGAATTTAGATCTTTTTGTTTTTGTTTTGTAAAAACCTAGTGCTGT TTACTTGAAACTGTGAAGTGAATACTTTTCTTTGATATTTTCCTGCAGTCTTTGAGAGGCCCTAGAGGTGGTATGATATT CTTCAAGAAGGATACAGTGCATGGGGTTGATCTGGAGCCTGCCATTAACAATGCTGTTTTCCCCGGTCTCCAGGTAAATT AGGAATGTCCTCTCATAATTTAGTTCTGTTTTAACTATTCGGGTTGAGAACACCCATTACCTTTATGGATATATGGAGTC ACATGCATTTATCTTCCTAGTTTGTGATACTGATATAGTTTACAATTGTCCAGGGGGGTCCTCATAACCACACAATCGGA GGACTAGCGGTTTGCTTGGAGCATGCCCAGTCTCCAGAATTCAAAGTTTACCAAAACCAGGTACGTAATATCTTTCTCAT CATTGGTTTTAGTTGGGCATATGGCACTTGCTAATAATGACACTCATTAAACTACCACCCTGCAGGTGGTTGCTAACTGT AGAGCTTTGGCTAACCGGTTAGTCGAGCTGGGGTATAAACTGGTTTCTGGTGGTAGTGATAATCACCTGGTTCTTGTTGA TCTGAGGCCATCTGTAAGCTTCTTGCTCTCTTTTTTTCTTTTGCGTCACAATAAAATCATAATTTCCTCATTTCTTCCCC TCGTCCTTTCCCTTGTAAAATAATGTAGGAGGGCCAAGTTTGCTCATAACTTAGCAGTCCAATGTAAATTGCTAGCATAT TTTATAACATGAAATGATATGATTTTGCAATATTGAAAAGTATGATCCTTTTTAGTACTTCGCTGTATGTCATATTAATC AGCATCACATCCTTTAGGGTATTGATGGTGCTCGGACAGAGAAAATTCTTGATCTGGCTTCTATAACACTCAACAAGAAC TCAGTGCCTGGTGAGAGACTTGATGTTTGTTGTGTATCTTTTAGTTTGCCGATTCATTTGTGATACTTCTGTCCCATTAT ACTGACATGTGCTAAACACTACAGGTGATAAGAGTGCCCTAGTTCCAGGTGGCATTCGCATCGGGTCACCTGCAATGACA ACAAGAGGACTTGGTGAAAAAGAATTTGCACTAATTGCAGACTTAATTCACGAGGGTGTGCAGATAAGTCTTGAAGCCAA AAGTTTGGCCTCAGGATCAAAGCTCCAAGATTTTATGAACCTTGTTTTATCTCCTGAATTTCCTTTGCAAGACAAGGTTA CAGAGTTACGTAAGAAAGTTGAAGCACTTGCTACTCGGTATCCAATTCCTGGAGTCTAA
CDS sequence (LotjaGi6g1v0314300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGCAGTTGGTTCATGCCTCACAAACAAGTACTCAGAAGGACTTCCTGGTAAAAGGTACTATGGTGGCAATGAGTT CATTGATGAGCTTGAAATCAAATGTCAAGAAAGGGCACTGGCTGCATTTCATGTAGATGGTAATAAGTGGGGTGTTAATG TTCAACCATTATCTGGTTCTCCAGCTAACTTTGCAGTGTACACTGCATTACTTAAACCTCATGATCGAATAATGGGTTTG GACTTGCCTCATGGGGGCCATTTGTCTCATGGATTTATGACGCCTAAAAGACGTGTATCAGCCACATCAATTTATTTTGA ATCTATGCCTTATCGACTTGATGAATCAACAGGTTTTATTGATTATGATATGCTGGAGAAAACTGCTATTCTCTTCCGAC CAAAACTCATAATTGCTGGTGCTAGTGCTTATCCTCGAGACATTGACTATCCTCGCATGAGAAAAATTGCAGATCAAGTA GGAGCTTTCCTTATGATGGATATGGCTCACATAAGTGGACTTGTTGCTGCATCTGTGCTTGCTAATCCCTTTGATTTCTG TGACATCGTGACCACCACAACCCACAAGTCTTTGAGAGGCCCTAGAGGTGGTATGATATTCTTCAAGAAGGATACAGTGC ATGGGGTTGATCTGGAGCCTGCCATTAACAATGCTGTTTTCCCCGGTCTCCAGGGGGGTCCTCATAACCACACAATCGGA GGACTAGCGGTTTGCTTGGAGCATGCCCAGTCTCCAGAATTCAAAGTTTACCAAAACCAGGTGGTTGCTAACTGTAGAGC TTTGGCTAACCGGTTAGTCGAGCTGGGGTATAAACTGGTTTCTGGTGGTAGTGATAATCACCTGGTTCTTGTTGATCTGA GGCCATCTGGTATTGATGGTGCTCGGACAGAGAAAATTCTTGATCTGGCTTCTATAACACTCAACAAGAACTCAGTGCCT GGTGATAAGAGTGCCCTAGTTCCAGGTGGCATTCGCATCGGGTCACCTGCAATGACAACAAGAGGACTTGGTGAAAAAGA ATTTGCACTAATTGCAGACTTAATTCACGAGGGTGTGCAGATAAGTCTTGAAGCCAAAAGTTTGGCCTCAGGATCAAAGC TCCAAGATTTTATGAACCTTGTTTTATCTCCTGAATTTCCTTTGCAAGACAAGGTTACAGAGTTACGTAAGAAAGTTGAA GCACTTGCTACTCGGTATCCAATTCCTGGAGTCTAA
Protein sequence (LotjaGi6g1v0314300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAVGSCLTNKYSEGLPGKRYYGGNEFIDELEIKCQERALAAFHVDGNKWGVNVQPLSGSPANFAVYTALLKPHDRIMGL DLPHGGHLSHGFMTPKRRVSATSIYFESMPYRLDESTGFIDYDMLEKTAILFRPKLIIAGASAYPRDIDYPRMRKIADQV GAFLMMDMAHISGLVAASVLANPFDFCDIVTTTTHKSLRGPRGGMIFFKKDTVHGVDLEPAINNAVFPGLQGGPHNHTIG GLAVCLEHAQSPEFKVYQNQVVANCRALANRLVELGYKLVSGGSDNHLVLVDLRPSGIDGARTEKILDLASITLNKNSVP GDKSALVPGGIRIGSPAMTTRGLGEKEFALIADLIHEGVQISLEAKSLASGSKLQDFMNLVLSPEFPLQDKVTELRKKVE ALATRYPIPGV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 411 | 411 | 1.3E-263 | – | |
| SUPERFAMILY | 1 | 410 | 410 | 2.3E-161 | ||
| Gene3D | 1 | 259 | 259 | 1.5E-195 | ||
| CDD | 1 | 361 | 361 | 0.0 | ||
| PIRSF | 1 | 411 | 411 | 4.6E-159 | ||
| PANTHER | 1 | 411 | 411 | 1.3E-263 | ||
| Hamap | 1 | 410 | 410 | 37.849 | ||
| Pfam | 1 | 355 | 355 | 6.3E-174 | ||
| ProSitePatterns | 188 | 204 | 17 | - | ||
| Gene3D | 260 | 409 | 150 | 1.5E-195 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Glycine hydroxymethyltransferase activity | Catalysis of the reaction: 5,10-methylenetetrahydrofolate + glycine + H2O = tetrahydrofolate + L-serine. | ||
| Biological process | Glycine biosynthetic process from serine | The chemical reactions and pathways resulting in the formation of glycine from other compounds, including serine. | ||
| Molecular function | Pyridoxal phosphate binding | Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. | ||
| Biological process | Tetrahydrofolate interconversion | The chemical reactions and pathways by which one-carbon (C1) units are transferred between tetrahydrofolate molecules, to synthesise other tetrahydrofolate molecules. |
Expression pattern of LotjaGi6g1v0314300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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