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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0318800 |
| Transcript ID | LotjaGi6g1v0318800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U-box domain-containing protein; TAIR: AT1G29340.1 plant U-box 17; Swiss-Prot: sp|Q9C7R6|PUB17_ARATH U-box domain-containing protein 17; TrEMBL-Plants: tr|A0A0B2ST26|A0A0B2ST26_GLYSO U-box domain-containing protein 17; Found in the gene: LotjaGi6g1v0318800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:63581768..63585853) extracted from Lotus japonicus Gifu genome v1.2.
CCTTTGAAGGCTTGACAAGATAAAGTTAATCAACATAAACTAACCCATCTTTAATTTATTAACCTCTTCTTTTGTTGTGT CTGTACTATTTCTTTCCTACCCCGGAAAAAAAGAAAAAAAAACCAATGGACAAGAATCTATGTAATAATCAAATCAAATG AAATGAAATTCAATCCGTCAAACTTTCATTATTCATTATTCACCAAGGTTAGCTAGCTCAGCTGCATAGAAATTCAGAAA GAAAACAGAGAGTCTTTGGAAATTCAGTCCCTTTCTATATTCAATTCTTTTTTCGTCCGTCTCATACACTCTAGACGCGG ATTCGGCTCAATTTTTAATTCAATCTCCTTCTTCTTATTCTTTCTTAACCCTTTCAACATTCAAACTCTCACCCATCATC ATCATCATCAACAACAACTGTTTCATTTTCTTAGTTCCGTATGCCGTTTGGGAACCCAGAAAGTTTTTTCCCGGAAAATT CACAGATCTAACCCAGGTCGGAAAACTTTGGAAAGGACTTACCTTTCTTTGGGCAAAATACTCAGCTCACGGAATTATTA TCTGGGTCATCAAGGGAATTTTAATTTCAATCCCTTTCAAGGTGGAGTTTGGTCGTCATCTTGGAAACCCTAGAATTTTC ATTTCCCGATTCCGATGGCTTCAGGCGCAATTTTCGCGTCTCTGCGGCGGAGGAGGTCGCCGACGTTGGACGCGTTTCTC GCCCCCGTTGACTTGAGCGACGTCGCTTTGGTGCAGACGCTTGTAGCGGTGGCTGGTGAGCTTGTGTCTTGCTTTTCCAA GCGTCCGTTCTTCTTCCAGAGCAAGAATTCCCGGTCTCTGATCCGGAAGGTGGAGGTTTTTCAGCTGCTGTTGGAGTATC TGAGCGATTCTGGTTCTGGGGCGTGTCTTCCACCTACTGCGTTACTTTGTCTCAAGGAGCTTTACCTGCTGCTGTACCGG ACCAAGATTCTGCTTGATTATTGCGCACAGTCGAGTAAGTTGTGGCTTTTGCTTCAGAACCATTCGATTTCTGGTCATTT CCATGATTTGAACCAAGAGATTTCGACCCTTTTGGATGTTTTTCCGATTAAGGATGTTAGGTTGAGTAAGGATGTTAGGG AACAGGTTGAGCTGTTGCAGAAGCAGTCTAGAAGGGCTAAGCTGTTTATAGACAAGAAAGATGATGCTCTTAGGATCCGG TTTTTTTCTTTTCTTGATGAGTTTGAGAAAGGGCAGATTCCTGGTTCAGCTGAATTGCAATCTTTCTATGTTGATAAGTT GCAGATTCTTGATGCTTCTGGTTGTAGAAATGAAATTGATGCTTTGGAGGAGCAGATTGTTAACCATGAGGGTGACATTG AGCCTACGATTTCGGTGCTAAAAGGGTTGGTGGCCATGACTCGGTATTGCAGGTTTTTGCTCTTTGGGTTTGAGGAAGAT GAGCTGGATTTGGAAGGTGGAAGTATGAAGAAGTCAAAGAGGAGATTGATTACTCAGGAAATTGCGGAAACGTTTTTAAC TGTTCCGAAGGACTTTTGCTGCCCAATATCATTGGATTTGATGAGAGACCCGGTGATAATTTCCACTGGTCAAACTTATG AGAGGAGTTCCATTTCAAGGTGGATGGAAGAAGGGCACACAACTTGCCCAAAAACAGGACAAATGCTTGGCCACAATCGC CTAGTTCCTAATCGTGCTCTGAGGAACTTGATTGTGCAGTGGTGCTCCGCTCATGGAGTTCCCCTTGACCCACCGGAGGT GTTGGAGGCAGAAGCTTTTGCATCAGCTTGTCCCACCAAGGCTGCCCTTGAAGCCAACAAAGCCACAGCAGCACTTCTCA TTCAACAGCTAGCTAACGGGTCACAATTTGGAAAGACTATAGCTGCTCGGGAGATACGGTTTCTAGCGAAAACTGGCAGA GAAAATCGTGCCTTCATTGCAGAAGCAGGGGCGATTCCTTATCTTCGGAACCTACTTTCATCACATAATGCCGTAGCTCA GGAGAATTCTGTGACTGCATTGCTCAACCTATCCATTTTCGACAAGAACAAAAGTCGGATCATGGATGAAGAAGGGTGTC TAGGATCAATTGTTGATGTGTTGAGATTTGGGCACACAACAGAAGCAAGGGAAAATGCGGCTGCAACATTGTTCAGCCTA TCAGCCGTCCATGACTACAAGAAAGTAATTGCAGATAGAACAGGAGCTGTTGAAGCCCTGGCAGGTCTATTGCAAGATGG AACTCCTAGAGGAAAGAAGGATGCTGTAACAGCTTTGTTCAATCTTTCGACACACACTGAGAATTGTGTTAGAATGATTG AGGCAGGGGCAGTGACGGCTCTAGTTGGAGCTTTGGGGAATGAAGGAGTTGCTGAGGAAGCAGCAGGTGCCCTCGCGTTG ATTGTCCGGCAGCCTATTGGAGCCAAGGCAGTAGTGACTGAGGACGAAGCAGTTGTTGGATTGATAGGAATGATGCGTTG TGGAACACCGAGAGGTAAAGAGAATGCAGTTGCAGCTTTACTCGAGTTGTGCAGGGGTGGAGGTGCGGCTGCAACTGAAA GGGTGGTTAAGGCGCCAGCTTTGGCTGGATTACTTCAAACCTTGCTTTTCACCGGGACAAAGCGGGCGAGACGGAAAGCT GCTTCACTTGCTAGAGTGTTTCAGAGATGTGAAAATGCATCTTTGCATTATGGTGGATTAGGTGTAGGGTATGCATTAGC TAGCAATTCAGCTCCTACTAGAGATACAAGCTATGCGGGTGATGTTTCAGTACCAATGTCCATTTCTGTCCCTGTTCTAT AGTGGTAATACTAATACCTCTGTTCATTACGTTCCCAATTTTTATCGAAAGTCTTTACAGATTCTTTCATTGAAAAGTTA AAGTCATAAGAAATTATAGTAATACAATATGTACTCCAAGAGATCGATGATTGTTGTTGTGCAGTTAGCTGCTGCATATG TGTAATTGAGTGATAATATGAAGCAAGAGTAGAGAATGCTCTACTAAAGAGTTAAGACCATTTCATGTGTCATTATTTTG TGCCTATCATTTTCCCTTTATATATAGTTAATAAATGACATGTGGAACAAAGAAAGTGTAATTAGAAATTTTGATATCAT GCCAGAGTTCAGGAGTTAACATTGTCTGGTCAACTACTAATTTTCTCGGTTATGATCTTTTGCATAAAGGGTAATTGTAT AAATTCAATTTGTTCTGCGATCTCCACAGTAAGCCAAAATCACAGTGGCTAGAAGCAATTTTCCTCAACTTTGCGACTGT CCATCATGATTTTAGCCGCACCGTGATTTTCCACCATGTATAAAACATGCACTTAGTTGGCAAATTGGCAGTGTTCAGAT TGAGTTGTATCCTGCTGGAGATTCCCAATAGAGTGCTTCAAGTGTGTAACATGTAGGATTCTTAGTTCTTAGTTAACACA GTCCACTTGTTCTCTACCATGAAGAATCTAGACTAGACTATACAGGTGAATGTTCTTTTCCTTACTTTTTGATTCATTCT GTGTTCCGGGAAAGCAGTTTTGCATTTCTGTGGTCTAAAGGCACAAGGGTATATTTTAAGTTCTAGAAAATTCTTCAGTT TATTTTATGAAGATCCTGAAAAGCTAGAAGATATTTCAGAGATGGGATTATTCTCCAAATTAAAGTAGTTGGCCCCTTTG AGTGGTGCAGGATGGTTATGAGACTCATCACTTATTCCTCTTCCATAGTCACATGATGACACACATGACCACGGCATTTG CTCCAATTAGACTCTTTGCCATTGGTGCACGTCAGCTTTGTATTATCTAGTTGATGTTTCTGCCTTACATTTTAAGTGAA ATGAAAAATTAATTAGACAAAGAATTATATCATCCATGAAAATAATCAATTTTGATACTCAGAAGCTATAAACAGAAGTT ACTCCCTATAATTATTTTGACTTTAGAACCACTTGTGAAGGATTTCAAAACATGCTATTAGAAAAAAATTGAATTTTCAA TGTTTAAGAAGAATGTGTTCAATGAATTGTTTGTAACGTTGATTTCTTTTGAATGATTAGATAGATAATTATATCAATTG TAATGC
CDS sequence (LotjaGi6g1v0318800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCAGGCGCAATTTTCGCGTCTCTGCGGCGGAGGAGGTCGCCGACGTTGGACGCGTTTCTCGCCCCCGTTGACTT GAGCGACGTCGCTTTGGTGCAGACGCTTGTAGCGGTGGCTGGTGAGCTTGTGTCTTGCTTTTCCAAGCGTCCGTTCTTCT TCCAGAGCAAGAATTCCCGGTCTCTGATCCGGAAGGTGGAGGTTTTTCAGCTGCTGTTGGAGTATCTGAGCGATTCTGGT TCTGGGGCGTGTCTTCCACCTACTGCGTTACTTTGTCTCAAGGAGCTTTACCTGCTGCTGTACCGGACCAAGATTCTGCT TGATTATTGCGCACAGTCGAGTAAGTTGTGGCTTTTGCTTCAGAACCATTCGATTTCTGGTCATTTCCATGATTTGAACC AAGAGATTTCGACCCTTTTGGATGTTTTTCCGATTAAGGATGTTAGGTTGAGTAAGGATGTTAGGGAACAGGTTGAGCTG TTGCAGAAGCAGTCTAGAAGGGCTAAGCTGTTTATAGACAAGAAAGATGATGCTCTTAGGATCCGGTTTTTTTCTTTTCT TGATGAGTTTGAGAAAGGGCAGATTCCTGGTTCAGCTGAATTGCAATCTTTCTATGTTGATAAGTTGCAGATTCTTGATG CTTCTGGTTGTAGAAATGAAATTGATGCTTTGGAGGAGCAGATTGTTAACCATGAGGGTGACATTGAGCCTACGATTTCG GTGCTAAAAGGGTTGGTGGCCATGACTCGGTATTGCAGGTTTTTGCTCTTTGGGTTTGAGGAAGATGAGCTGGATTTGGA AGGTGGAAGTATGAAGAAGTCAAAGAGGAGATTGATTACTCAGGAAATTGCGGAAACGTTTTTAACTGTTCCGAAGGACT TTTGCTGCCCAATATCATTGGATTTGATGAGAGACCCGGTGATAATTTCCACTGGTCAAACTTATGAGAGGAGTTCCATT TCAAGGTGGATGGAAGAAGGGCACACAACTTGCCCAAAAACAGGACAAATGCTTGGCCACAATCGCCTAGTTCCTAATCG TGCTCTGAGGAACTTGATTGTGCAGTGGTGCTCCGCTCATGGAGTTCCCCTTGACCCACCGGAGGTGTTGGAGGCAGAAG CTTTTGCATCAGCTTGTCCCACCAAGGCTGCCCTTGAAGCCAACAAAGCCACAGCAGCACTTCTCATTCAACAGCTAGCT AACGGGTCACAATTTGGAAAGACTATAGCTGCTCGGGAGATACGGTTTCTAGCGAAAACTGGCAGAGAAAATCGTGCCTT CATTGCAGAAGCAGGGGCGATTCCTTATCTTCGGAACCTACTTTCATCACATAATGCCGTAGCTCAGGAGAATTCTGTGA CTGCATTGCTCAACCTATCCATTTTCGACAAGAACAAAAGTCGGATCATGGATGAAGAAGGGTGTCTAGGATCAATTGTT GATGTGTTGAGATTTGGGCACACAACAGAAGCAAGGGAAAATGCGGCTGCAACATTGTTCAGCCTATCAGCCGTCCATGA CTACAAGAAAGTAATTGCAGATAGAACAGGAGCTGTTGAAGCCCTGGCAGGTCTATTGCAAGATGGAACTCCTAGAGGAA AGAAGGATGCTGTAACAGCTTTGTTCAATCTTTCGACACACACTGAGAATTGTGTTAGAATGATTGAGGCAGGGGCAGTG ACGGCTCTAGTTGGAGCTTTGGGGAATGAAGGAGTTGCTGAGGAAGCAGCAGGTGCCCTCGCGTTGATTGTCCGGCAGCC TATTGGAGCCAAGGCAGTAGTGACTGAGGACGAAGCAGTTGTTGGATTGATAGGAATGATGCGTTGTGGAACACCGAGAG GTAAAGAGAATGCAGTTGCAGCTTTACTCGAGTTGTGCAGGGGTGGAGGTGCGGCTGCAACTGAAAGGGTGGTTAAGGCG CCAGCTTTGGCTGGATTACTTCAAACCTTGCTTTTCACCGGGACAAAGCGGGCGAGACGGAAAGCTGCTTCACTTGCTAG AGTGTTTCAGAGATGTGAAAATGCATCTTTGCATTATGGTGGATTAGGTGTAGGGTATGCATTAGCTAGCAATTCAGCTC CTACTAGAGATACAAGCTATGCGGGTGATGTTTCAGTACCAATGTCCATTTCTGTCCCTGTTCTATAG
Protein sequence (LotjaGi6g1v0318800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASGAIFASLRRRRSPTLDAFLAPVDLSDVALVQTLVAVAGELVSCFSKRPFFFQSKNSRSLIRKVEVFQLLLEYLSDSG SGACLPPTALLCLKELYLLLYRTKILLDYCAQSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPIKDVRLSKDVREQVEL LQKQSRRAKLFIDKKDDALRIRFFSFLDEFEKGQIPGSAELQSFYVDKLQILDASGCRNEIDALEEQIVNHEGDIEPTIS VLKGLVAMTRYCRFLLFGFEEDELDLEGGSMKKSKRRLITQEIAETFLTVPKDFCCPISLDLMRDPVIISTGQTYERSSI SRWMEEGHTTCPKTGQMLGHNRLVPNRALRNLIVQWCSAHGVPLDPPEVLEAEAFASACPTKAALEANKATAALLIQQLA NGSQFGKTIAAREIRFLAKTGRENRAFIAEAGAIPYLRNLLSSHNAVAQENSVTALLNLSIFDKNKSRIMDEEGCLGSIV DVLRFGHTTEARENAAATLFSLSAVHDYKKVIADRTGAVEALAGLLQDGTPRGKKDAVTALFNLSTHTENCVRMIEAGAV TALVGALGNEGVAEEAAGALALIVRQPIGAKAVVTEDEAVVGLIGMMRCGTPRGKENAVAALLELCRGGGAAATERVVKA PALAGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGVGYALASNSAPTRDTSYAGDVSVPMSISVPVL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 713 | 705 | 0.0 | – | |
| PANTHER | 9 | 713 | 705 | 0.0 | – | |
| Coils | 214 | 234 | 21 | - | – | |
| SUPERFAMILY | 278 | 363 | 86 | 9.27E-31 | – | |
| ProSiteProfiles | 289 | 363 | 75 | 41.833 | ||
| Gene3D | 289 | 363 | 75 | 1.2E-28 | ||
| Pfam | 290 | 360 | 71 | 1.6E-19 | ||
| SMART | 293 | 356 | 64 | 2.5E-29 | ||
| CDD | 294 | 336 | 43 | 4.16264E-26 | – | |
| Gene3D | 393 | 515 | 123 | 5.0E-18 | ||
| SUPERFAMILY | 394 | 669 | 276 | 1.08E-34 | ||
| SMART | 421 | 461 | 41 | 0.02 | ||
| Pfam | 422 | 460 | 39 | 1.3E-6 | ||
| ProSiteProfiles | 432 | 474 | 43 | 9.537 | ||
| SMART | 506 | 546 | 41 | 21.0 | ||
| Gene3D | 516 | 684 | 169 | 8.7E-20 | ||
| ProSiteProfiles | 517 | 559 | 43 | 9.012 | ||
| SMART | 547 | 585 | 39 | 0.0066 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi6g1v0318800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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